RchiOBHm_Chr6g0312941

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000670
Physical Location & Seq
Reverse (-)
69521702 .. 69528563
6862 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28154

Sequence Viewer

Length: 2694 bp
ATGTCTCAGACTAACTGGGAAGCTGATAAAATGTTAGATGTCTATATCCATGATTATCTAGTGAAAAGAGACTTAAAGGCTTCTGCTCAAGCTTTCCAAGCTGAAGGGAAGGTGTCGTCTGATCCCGTTGCTATTGATGCACCGGGAGGTTTTCTATTTGAATGGTGGTCAGTTTTCTGGGATATATTTATTGCTAGGACCAATGAGAAGCATTCAGAGGTTGCTGCATCTTACATCGAGACACAGTTCATTAAAGCAAGGGAGCAGCACCAGCAACAACAACAACAACAACAACAACAGCAACAATCCCAGCAACCCCAACACTCACAACAACAGCAGCAGCAGCAGCAGCAACAGCAACACATGCAAATGCAGCAGATTCTGATGCAAAGACATCAGCAGCAACAACAACAGCAACAACATCAGCAACAACAGCAGCAACAACAACAGCAGCCACAGCAACAACAGCAGCCACAGCAACAACAACAGCCACAACAGAGAAGAGATGGGGCCCATCTCTTAAATGGAAATACAAATGGGCTTGTTGGAAATGATCCTCTCATGCGACAAAATCCTGGAACAGCAAATGCTATGGCTACAAAGATGTACGAGGAAAGATTAAAACTCCCCCAGAGAGATTCTTTGGATGATTCATCTCTAAAGAGATTTGGTGAGAATGTGGGCCAGCTTTTGGATCAAAATCATGCTTCAATATTAAAGTCAGCTGCAGCAGCTGGTCAGCCTTCAGGGCAAGTTTTGCATGGTACAGCCGGTGGGATGACTCAACAAGTCCAAGCTCGAAATCAGCAACTGCCAGGATCTACGCCGGATATAAAGACAGAAATTAATCCTGTATTGAATCCAAGAGCTCCCGAGGGATCATTGATGGGAATTCCAGGGTCTAATCAGGGTGGTAACAATCTGACTTTGAAAGGATGGCCACTCACAGGTCTGGATCAACTTCGCTCTGGACTTCTTCAGCAACAAAAACCTTTTATACAAGCTCCCCAGCCCTTTCATCAGCTTCAAATGCTGACACCACAACACCAGCAACAACTTATGCTTGCCCAGCAAAATTTGACATCCCCATCTGCCAGTGATGATAGTAGAAGACTAAGAATGCTATTGAATAATCGAAGTATGGGGCTTGGAAAGGATGGCCTTTCAAATTCTGTTGGCGATGTAGTGCCAAATGTAGGATCACCTCTTCAAGCTCCAGGCTCTATGATGCCTCGTGGAGATACAGATATGCTGATGAAGTTAAAAATGGCTCAACTACAGCAACAGCAGAATAGTAATCCACAACAACAGCTTCAGCAGCATGCTCTTTCTGCTCAGCAGTTGCAAAGTTCAAATCATAATCCTCATCAGCAAGATAAAATGGGGGGTGCTGGCAGCATCACAATGGATGCTAGCATGTCAAACTCTTTTCGAGGAAATGATCAGGTCACAAAAAACCAGCCTGGGAGGAAGAGAAAGCAGCCAGTGTCATCTTCAGGCCCTGCCAATAGCACGGGAACAGCAAACACAGCTGGACCTTCCCCGAGTTCAGCTCCTTCCACTCCTTCAACCCACACTCCTGGTGATGTAATATCAATGCCTGCCTTACCCCATAGTGGTGGTTCCTCTAAGCCTCTGATGATGTTTGGTGCTGATGGTACTGGTACGCTCACCTCACCCTCAAATCCACTGGCTGATATGGATCGATTTGTGGAGGATGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCTCATGATGATGCAGACCCTAGAGATGCTGTTGGTCGAGGTATGGATGTCAGCAAAGGGTTCACATTTACGGAAGTAAACTCTGTTAAAGCAAGCCCAAGCAAAGTTACTAGTTGTCACTTCTCATCGGATGGAAAACTTCTTACTAGTGGCGGCCATGATAAAAAGGCTGTATTATGGTACACTGATACTCTGAAGTCAAAATCTACACTTGAAGAACATTCAGCTTTGATAACTGATGTTCGGTTCAGTCCGAGCATTCCACGTCTTGCAACATCTTCATTCGACAAAACTGTCAGAGTCTGGGATGCTGATAATCCTGGTTATTCACTTCGTACATTCATGGGACATACTGCATCAGTGATGTCAGTAGATTTCCACCCGAACAAGGACGACCTTATATGTTCCTGTGATGGGGACGGTGAGATACGCTACTGGAGTATTAACAATGGCAGCTGTGCAAGAGTTTTCAAGGGTGGGACGACTCAGGTGAGATTCCAACCTCGTCTTGGAAGATATCTTGCTGCAGCAGCTGAGAATATTGTATCTATACTGGATGTGGAGTCACAGGCTTGTCGGCATTCATTACAGGGACATACAAAGCCTATTAATTCTGTGTGCTGGGATCCTTCTGGTGAGTTCCTTGCATCCCTGAGTGAGGACTTTGTCAAAGTTTGGACTTTCGGATCAGGAAATGAAGGGGCATGTGTTCATGAATTGAACTGTAATGGCAATAAATTTCATTCCTGTGTTTTCCATCCAACATATACTTCACTGCTGGTCGTTGGTTGTTACCAGTCTTTGGAGCTATGGAACATGCAAGAGAACAAGACAATGACTCTATCAGCACATGAAGGTCTTATTGCTTCGTTGGCTGTGTCAACCGTAACGGGTTTGGTTGCTTCAGCTAGTCACGATAAGTGGGTTAAGCTCTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

897

Amino Acids

98.61

Weight (kDa)

6.58

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 10 - 36 1.8e-06 LisH
WD40_Gbeta PF25391 604 - 747 1.8e-10 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 606 - 669 1.6e-07 THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 606 - 810 1.2e-11 MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd PF25172 610 - 810 3.1e-16 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 615 - 810 2.1e-29 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 616 - 748 7.6e-27 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 616 - 732 2.4e-20 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 616 - 736 1.7e-14 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 617 - 716 3.7e-06 WDR36/Utp21 second beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 618 - 690 1.9e-06 CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st PF24817 618 - 690 5.5e-09 WDHD1 first WD40 domain
EIF3I PF24805 619 - 689 2.2e-06 EIF3I
Beta-prop_TEP1_2nd PF25047 647 - 746 4.4e-07 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 648 - 805 2e-16 CDC20/Fizzy WD40 domain
WD40 PF00400 651 - 687 1.9e-07 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 658 - 897 2.9e-37 THOC3 beta-propeller domain
WD40 PF00400 693 - 731 2.8e-06 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 695 - 743 4.5e-07 WDHD1 first WD40 domain
Beta-prop_EML PF23409 696 - 896 3.2e-07 Echinoderm microtubule-associated protein first beta-propeller
WDR55 PF24796 702 - 867 7.9e-08 WDR55
WD40_Gbeta PF25391 715 - 896 5.6e-10 G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st PF25173 721 - 856 3.3e-15 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 744 - 896 1.7e-24 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 745 - 829 1e-09 WDHD1 first WD40 domain
WD40_Prp19 PF24814 746 - 896 4.4e-17 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 755 - 896 8.1e-08 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 756 - 897 1.5e-08 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 756 - 890 4.6e-07 WDR36/Utp21 first beta-propeller
WD40 PF00400 776 - 810 7.4e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2045
AccB7I CCANNNNNTGG 2 cut(s) 691, 2554
AciI CCGC 1 cut(s) 1905
AcoI YGGCCR 2 cut(s) 938, 1906
AcsI RAATTY 4 cut(s) 891, 1075, 1168, 2489
AcuI CTGAAG 7 cut(s) 123, 729, 962, 1298, 1479, 1967, 2640
AfaI GTAC 6 cut(s) 608, 766, 1660, 1666, 1934, 2089
AfiI CCNNNNNNNGG 9 cut(s) 691, 947, 1196, 1616, 2140, 2166, 2261, 2410, 2554
AhlI ACTAGT 2 cut(s) 1862, 1898
AjiI CACGTC 1 cut(s) 2018
AjnI CCWGG 7 cut(s) 574, 814, 895, 1216, 1462, 1579, 2071
AjuI GAANNNNNNNTTGG 2 cut(s) 2506, 2538
Alw21I GWGCWC 1 cut(s) 871
Alw26I GTCTC 3 cut(s) 9, 63, 233
AlwNI CAGNNNCTG 6 cut(s) 382, 734, 811, 1502, 2055, 2285
Ama87I CYCGRG 2 cut(s) 872, 1543
AoxI GGCC 6 cut(s) 510, 682, 938, 1159, 1498, 1906
ApaI GGGCCC 1 cut(s) 514
ApoI RAATTY 4 cut(s) 891, 1075, 1168, 2489
AseI ATTAAT 2 cut(s) 846, 2361
AspS9I GGNCC 6 cut(s) 198, 510, 511, 682, 1499, 1535
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 8 cut(s) 683, 1194, 1595, 1663, 1668, 2186, 2254, 2399
AsuNHI GCTAGC 1 cut(s) 1412
AvaI CYCGRG 2 cut(s) 872, 1543
AvaII GGWCC 2 cut(s) 198, 1535
BaeGI GKGCMC 1 cut(s) 514
BalI TGGCCA 1 cut(s) 940
BamHI GGATCC 1 cut(s) 2377
BanII GRGCYC 2 cut(s) 514, 871
BauI CACGAG 1 cut(s) 1233
BbsI GAAGAC 1 cut(s) 1117
Bbv12I GWGCWC 1 cut(s) 871
BciT130I CCWGG 7 cut(s) 576, 816, 897, 1218, 1464, 1581, 2073
BclI TGATCA 1 cut(s) 1441
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 3 cut(s) 9, 63, 233
BcuI ACTAGT 2 cut(s) 1862, 1898
BfaI CTAG 7 cut(s) 59, 195, 1413, 1773, 1863, 1899, 2661
BfmI CTRYAG 3 cut(s) 726, 1277, 2277
BglI GCCNNNNNGGC 1 cut(s) 748
BlpI GCTNAGC 1 cut(s) 1335
Bme1390I CCNGG 8 cut(s) 144, 576, 816, 897, 1218, 1464, 1581, 2073
Bme18I GGWCC 2 cut(s) 198, 1535
BmeT110I CYCGRG 2 cut(s) 872, 1543
BmgBI CACGTC 1 cut(s) 2018
BmgT120I GGNCC 6 cut(s) 198, 510, 511, 682, 1499, 1535
BmiI GGNNCC 4 cut(s) 511, 512, 1624, 2379
BmrFI CCNGG 8 cut(s) 144, 576, 816, 897, 1218, 1464, 1581, 2073
BmrI ACTGGG 1 cut(s) 25
BmtI GCTAGC 1 cut(s) 1416
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 1117
BplI GAGNNNNNCTC 2 cut(s) 1537, 1569
BpmI CTGGAG 2 cut(s) 1200, 2209
Bpu1102I GCTNAGC 1 cut(s) 1335
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 144
Bsa29I ATCGAT 1 cut(s) 1705
BsaBI GATNNNNATC 2 cut(s) 699, 1701
BsaJI CCNNGG 3 cut(s) 873, 896, 1463
BsaXI ACNNNNNCTCC 2 cut(s) 1561, 1591
Bsc4I CCNNNNNNNGG 9 cut(s) 691, 947, 1196, 1616, 2140, 2166, 2261, 2410, 2554
Bse118I RCCGGY 1 cut(s) 770
Bse1I ACTGG 8 cut(s) 20, 1095, 1484, 1666, 1695, 2192, 2310, 2548
Bse8I GATNNNNATC 2 cut(s) 699, 1701
BseBI CCWGG 7 cut(s) 576, 816, 897, 1218, 1464, 1581, 2073
BseCI ATCGAT 1 cut(s) 1705
BseDI CCNNGG 3 cut(s) 873, 896, 1463
BseJI GATNNNNATC 2 cut(s) 699, 1701
BseLI CCNNNNNNNGG 9 cut(s) 691, 947, 1196, 1616, 2140, 2166, 2261, 2410, 2554
BseMII CTCAG 5 cut(s) 20, 1349, 2252, 2277, 2396
BseNI ACTGG 8 cut(s) 20, 1095, 1484, 1666, 1695, 2192, 2310, 2548
BseSI GKGCMC 1 cut(s) 514
BseYI CCCAGC 4 cut(s) 309, 1008, 1068, 2373
BshFI GGCC 6 cut(s) 512, 684, 940, 1161, 1500, 1908
BshVI ATCGAT 1 cut(s) 1705
BsiHKAI GWGCWC 1 cut(s) 871
BsiHKCI CYCGRG 2 cut(s) 872, 1543
BsiSI CCGG 3 cut(s) 143, 771, 827
BslFI GGGAC 4 cut(s) 2112, 2183, 2245, 2358
BslI CCNNNNNNNGG 9 cut(s) 691, 947, 1196, 1616, 2140, 2166, 2261, 2410, 2554
BsmAI GTCTC 3 cut(s) 9, 63, 233
BsmFI GGGAC 4 cut(s) 2112, 2183, 2245, 2358
BsmI GAATGC 4 cut(s) 211, 1125, 2010, 2332
BsnI GGCC 6 cut(s) 512, 684, 940, 1161, 1500, 1908
BsoBI CYCGRG 2 cut(s) 872, 1543
Bsp120I GGGCCC 1 cut(s) 510
Bsp1286I GDGCHC 2 cut(s) 514, 871
Bsp1720I GCTNAGC 1 cut(s) 1335
BspACI CCGC 1 cut(s) 1905
BspANI GGCC 6 cut(s) 512, 684, 940, 1161, 1500, 1908
BspCNI CTCAG 5 cut(s) 19, 1348, 2251, 2278, 2397
BspDI ATCGAT 1 cut(s) 1705
BspHI TCATGA 2 cut(s) 1756, 2464
BspLI GGNNCC 4 cut(s) 511, 512, 1624, 2379
BspMAI CTGCAG 2 cut(s) 730, 2281
BspOI GCTAGC 1 cut(s) 1416
BsrFI RCCGGY 1 cut(s) 770
BsrI ACTGG 8 cut(s) 20, 1095, 1484, 1666, 1695, 2192, 2310, 2548
BssAI RCCGGY 1 cut(s) 770
BssECI CCNNGG 3 cut(s) 873, 896, 1463
BssSI CACGAG 1 cut(s) 1233
Bst2BI CACGAG 1 cut(s) 1233
Bst2UI CCWGG 7 cut(s) 576, 816, 897, 1218, 1464, 1581, 2073
Bst4CI ACNGT 5 cut(s) 246, 2047, 2174, 2477, 2638
Bst6I CTCTTC 3 cut(s) 496, 1212, 1466
BstAPI GCANNNNNTGC 2 cut(s) 364, 757
BstC8I GCNNGC 7 cut(s) 686, 1065, 1323, 1393, 1414, 1602, 1846
BstDEI CTNAG 7 cut(s) 6, 1115, 1335, 1629, 2238, 2286, 2405
BstENI CCTNNNNNAGG 1 cut(s) 2408
BstMAI GTCTC 3 cut(s) 9, 63, 233
BstNI CCWGG 7 cut(s) 576, 816, 897, 1218, 1464, 1581, 2073
BstNSI RCATGY 5 cut(s) 367, 1325, 1420, 2460, 2572
BstSCI CCNGG 8 cut(s) 142, 574, 814, 895, 1216, 1462, 1579, 2071
BstSFI CTRYAG 3 cut(s) 726, 1277, 2277
BstSLI GKGCMC 1 cut(s) 514
BstV2I GAAGAC 1 cut(s) 1117
BstX2I RGATCY 3 cut(s) 818, 1721, 2377
BstXI CCANNNNNNTGG 2 cut(s) 1580, 1619
BstYI RGATCY 3 cut(s) 818, 1721, 2377
Bsu15I ATCGAT 1 cut(s) 1705
BsuRI GGCC 6 cut(s) 512, 684, 940, 1161, 1500, 1908
BsuTUI ATCGAT 1 cut(s) 1705
BtgZI GCGATG 1 cut(s) 1194
BtrI CACGTC 1 cut(s) 2018
BtsI GCAGTG 1 cut(s) 2525
BtsIMutI CAGTG 6 cut(s) 1102, 1491, 1688, 1935, 2118, 2525
Cac8I GCNNGC 7 cut(s) 686, 1065, 1323, 1393, 1414, 1602, 1846
CaiI CAGNNNCTG 6 cut(s) 382, 734, 811, 1502, 2055, 2285
CciI TCATGA 2 cut(s) 1756, 2464
Cfr10I RCCGGY 1 cut(s) 770
Cfr13I GGNCC 6 cut(s) 198, 510, 511, 682, 1499, 1535
ClaI ATCGAT 1 cut(s) 1705
Csp6I GTAC 6 cut(s) 607, 765, 1659, 1665, 1933, 2088
CviQI GTAC 6 cut(s) 607, 765, 1659, 1665, 1933, 2088
DdeI CTNAG 7 cut(s) 6, 1115, 1335, 1629, 2238, 2286, 2405
DrdI GACNNNNNNGTC 1 cut(s) 2045
DseDI GACNNNNNNGTC 1 cut(s) 2045
EaeI YGGCCR 2 cut(s) 938, 1906
Eam1104I CTCTTC 3 cut(s) 496, 1212, 1466
EarI CTCTTC 3 cut(s) 496, 1212, 1466
Ecl136II GAGCTC 1 cut(s) 869
Eco24I GRGCYC 2 cut(s) 514, 871
Eco32I GATATC 1 cut(s) 2270
Eco47I GGWCC 2 cut(s) 198, 1535
Eco53kI GAGCTC 1 cut(s) 869
Eco57I CTGAAG 7 cut(s) 123, 729, 962, 1298, 1479, 1967, 2640
Eco88I CYCGRG 2 cut(s) 872, 1543
EcoICRI GAGCTC 1 cut(s) 869
EcoNI CCTNNNNNAGG 1 cut(s) 2408
EcoO109I RGGNCCY 2 cut(s) 510, 1499
EcoRI GAATTC 1 cut(s) 891
EcoRII CCWGG 7 cut(s) 574, 814, 895, 1216, 1462, 1579, 2071
EcoRV GATATC 1 cut(s) 2270
EcoT38I GRGCYC 2 cut(s) 514, 871
FaqI GGGAC 4 cut(s) 2112, 2183, 2245, 2358
FbaI TGATCA 1 cut(s) 1441
FriOI GRGCYC 2 cut(s) 514, 871
FspBI CTAG 7 cut(s) 59, 195, 1413, 1773, 1863, 1899, 2661
GsaI CCCAGC 4 cut(s) 313, 1012, 1072, 2377
GsuI CTGGAG 2 cut(s) 1200, 2209
HaeIII GGCC 6 cut(s) 512, 684, 940, 1161, 1500, 1908
HapII CCGG 3 cut(s) 143, 771, 827
HincII GTYRAC 1 cut(s) 2634
HindII GTYRAC 1 cut(s) 2634
HindIII AAGCTT 1 cut(s) 90
HpaII CCGG 3 cut(s) 143, 771, 827
HphI GGTGA 8 cut(s) 683, 1194, 1595, 1663, 1668, 2186, 2254, 2399
Hpy166II GTNNAC 4 cut(s) 1815, 1831, 1935, 2634
Hpy8I GTNNAC 4 cut(s) 1815, 1831, 1935, 2634
HpyAV CCTTC 9 cut(s) 98, 103, 753, 1548, 1566, 1575, 2391, 2444, 2600
HpyCH4III ACNGT 5 cut(s) 246, 2047, 2174, 2477, 2638
HpyCH4IV ACGT 1 cut(s) 2017
HpyF3I CTNAG 7 cut(s) 6, 1115, 1335, 1629, 2238, 2286, 2405
HpySE526I ACGT 1 cut(s) 2017
Ksp22I TGATCA 1 cut(s) 1441
LmnI GCTCC 6 cut(s) 262, 874, 1009, 1219, 1558, 2557
MaeI CTAG 7 cut(s) 59, 195, 1413, 1773, 1863, 1899, 2661
MaeII ACGT 1 cut(s) 2017
MaeIII GTNAC 8 cut(s) 914, 1447, 1858, 1868, 2316, 2543, 2638, 2663
MboII GAAGA 9 cut(s) 513, 968, 1122, 1199, 1483, 1485, 1979, 2022, 2277
MflI RGATCY 3 cut(s) 818, 1721, 2377
MhlI GDGCHC 2 cut(s) 514, 871
MlsI TGGCCA 1 cut(s) 940
MluCI AATT 7 cut(s) 843, 891, 1075, 1168, 2362, 2468, 2489
MluNI TGGCCA 1 cut(s) 940
MlyI GAGTC 6 cut(s) 775, 1751, 2061, 2230, 2324, 2584
MmeI TCCRAC 3 cut(s) 526, 2275, 2537
Mox20I TGGCCA 1 cut(s) 940
MscI TGGCCA 1 cut(s) 940
MslI CAYNNNNRTG 5 cut(s) 368, 1403, 1617, 1761, 2499
Msp20I TGGCCA 1 cut(s) 940
MspA1I CMGCKG 5 cut(s) 725, 734, 1532, 2208, 2285
MspI CCGG 3 cut(s) 143, 771, 827
MspR9I CCNGG 8 cut(s) 144, 576, 816, 897, 1218, 1464, 1581, 2073
Mva1269I GAATGC 4 cut(s) 211, 1125, 2010, 2332
MvaI CCWGG 7 cut(s) 576, 816, 897, 1218, 1464, 1581, 2073
NciI CCSGG 1 cut(s) 144
NheI GCTAGC 1 cut(s) 1412
NlaIV GGNNCC 4 cut(s) 511, 512, 1624, 2379
NmuCI GTSAC 4 cut(s) 1447, 1868, 2316, 2663
NspI RCATGY 5 cut(s) 367, 1325, 1420, 2460, 2572
PaeI GCATGC 1 cut(s) 1325
PagI TCATGA 2 cut(s) 1756, 2464
PctI GAATGC 4 cut(s) 211, 1125, 2010, 2332
PfeI GAWTC 5 cut(s) 379, 638, 650, 859, 2247
PflFI GACNNNGTC 1 cut(s) 2417
PflMI CCANNNNNTGG 2 cut(s) 691, 2554
PfoI TCCNGGA 1 cut(s) 574
PleI GAGTC 6 cut(s) 775, 1750, 2060, 2230, 2323, 2584
PpsI GAGTC 6 cut(s) 775, 1750, 2060, 2230, 2323, 2584
PshBI ATTAAT 2 cut(s) 846, 2361
Psp124BI GAGCTC 1 cut(s) 871
Psp6I CCWGG 7 cut(s) 574, 814, 895, 1216, 1462, 1579, 2071
PspFI CCCAGC 4 cut(s) 309, 1008, 1068, 2373
PspGI CCWGG 7 cut(s) 574, 814, 895, 1216, 1462, 1579, 2071
PspN4I GGNNCC 4 cut(s) 511, 512, 1624, 2379
PspOMI GGGCCC 1 cut(s) 510
PspPI GGNCC 6 cut(s) 198, 510, 511, 682, 1499, 1535
PstI CTGCAG 2 cut(s) 730, 2281
PstNI CAGNNNCTG 6 cut(s) 382, 734, 811, 1502, 2055, 2285
PsuI RGATCY 3 cut(s) 818, 1721, 2377
PsyI GACNNNGTC 1 cut(s) 2417
PvuII CAGCTG 5 cut(s) 725, 734, 1532, 2208, 2285
RsaI GTAC 6 cut(s) 608, 766, 1660, 1666, 1934, 2089
RsaNI GTAC 6 cut(s) 607, 765, 1659, 1665, 1933, 2088
RseI CAYNNNNRTG 5 cut(s) 368, 1403, 1617, 1761, 2499
SacI GAGCTC 1 cut(s) 871
Sau96I GGNCC 6 cut(s) 198, 510, 511, 682, 1499, 1535
SchI GAGTC 6 cut(s) 775, 1751, 2061, 2230, 2324, 2584
ScrFI CCNGG 8 cut(s) 144, 576, 816, 897, 1218, 1464, 1581, 2073
SduI GDGCHC 2 cut(s) 514, 871
SfcI CTRYAG 3 cut(s) 726, 1277, 2277
SinI GGWCC 2 cut(s) 198, 1535
SmiMI CAYNNNNRTG 5 cut(s) 368, 1403, 1617, 1761, 2499
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
SpeI ACTAGT 2 cut(s) 1862, 1898
SphI GCATGC 1 cut(s) 1325
Sse9I AATT 7 cut(s) 843, 891, 1075, 1168, 2362, 2468, 2489
SsiI CCGC 1 cut(s) 1905
SspI AATATT 2 cut(s) 714, 2293
SspMI CTAG 7 cut(s) 59, 195, 1413, 1773, 1863, 1899, 2661
SstI GAGCTC 1 cut(s) 871
StyD4I CCNGG 8 cut(s) 142, 574, 814, 895, 1216, 1462, 1579, 2071
TaaI ACNGT 5 cut(s) 246, 2047, 2174, 2477, 2638
TaiI ACGT 1 cut(s) 2020
TaqI TCGA 7 cut(s) 237, 799, 1135, 1432, 1705, 1789, 2037
TasI AATT 7 cut(s) 843, 891, 1075, 1168, 2362, 2468, 2489
TauI GCSGC 1 cut(s) 1908
TfiI GAWTC 5 cut(s) 379, 638, 650, 859, 2247
TscAI CASTG 6 cut(s) 1102, 1491, 1695, 1942, 2118, 2532
TseFI GTSAC 4 cut(s) 1447, 1868, 2316, 2663
Tsp45I GTSAC 4 cut(s) 1447, 1868, 2316, 2663
TspGWI ACGGA 1 cut(s) 1838
TspRI CASTG 6 cut(s) 1102, 1491, 1695, 1942, 2118, 2532
Tth111I GACNNNGTC 1 cut(s) 2417
Van91I CCANNNNNTGG 2 cut(s) 691, 2554
VpaK11BI GGWCC 2 cut(s) 198, 1535
VspI ATTAAT 2 cut(s) 846, 2361
XagI CCTNNNNNAGG 1 cut(s) 2408
XapI RAATTY 4 cut(s) 891, 1075, 1168, 2489
XceI RCATGY 5 cut(s) 367, 1325, 1420, 2460, 2572
XcmI CCANNNNNNNNNTGG 2 cut(s) 521, 2258
XspI CTAG 7 cut(s) 59, 195, 1413, 1773, 1863, 1899, 2661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.