FvH4_1g04170

Transcriptional corepressor LEUNIG-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000670
Physical Location & Seq
Forward (+)
2205557 .. 2212811
7255 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04170.t7

Sequence Viewer

Length: 2613 bp
ATGGCCTCTCAGGCCAATTGGGAAGCTGATAAAATGTTGGATGTTTATATTTATGATTACCTTCTGAAGAGAAACTTACATGCTTCTGCAAAGGCTTTTCAAGCTGAAGGAAAAGTTTCTACAGATCCTGTAGCTATTGATGCACCTGGTGGCTTTCTTTTCGAATGGTGGTCTGTCTTTTGGGATATATTTATCGCTAGGACAAATGAAAAGCACTCCGAAGCAGCTGCATCTTATATTGAGACTCAAGTGAACAAGGCTCGGGAGCTGCAACAGAAGCCCCAGCAGAATCCTCAAATGCAAATGCAGCATCTTTTGCAAAGGCATGCTGCTCAGCAGCAGCAACAACAGCAGCAGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACACCAACAACAACAACACCAGCAACAGCAAAGACGGGATGGGACCCAACTTCTTAATGGAGCTTCCAATGGGCTTGTTGGCACGGATCCTCTTCTGAGGCAGAACTCTGCAACTGCAAATGCCATGACAACAAAAATGTTTGAGGACAGATTGAAGCCTCCCATACAGAGGGATGCTTTGGATGATGTGGCTATAAAGCAAAGGTTGGGTGACAATATGAGTCAGCTTATGGATTCAAATCGTGCGTCATTGGTGAAAGTAGCCACAGCAGGTGGCCAGTCTCCTGGTCAAATGCTGCATGGTACACCTGGAGGTATGTTGGGGAATCTTCAACAAGCTCACAATCGGAATCAGCAACACCCTGGATTGATGCAGGACATAAAGACTGAGATGATGAACCCAAGAGCTGCTGGTCCTGAAGGATCGTTGATGGGTCTCCATGGATCAAATGAAGGCAGTAGCAATTTGACTCTGAAGGGTTGGCCTTTGACGGTTCGACCTGGAATTCTCCAGCAGCAAAATTCCATGATGCAGTCCTCTCAGCCCTTTAATCAGTTTCAGCTCCAGCAGCAACTTCTACTCCAGGCCCAACAAAATTTAGCCTCCCCATCTGCCAGTGACTTGGAAACTAGAAGGCTGACAATGCTTCTCAATAGGAATATATCTAACGTTGATGTACCTAACGCTGGATCACCTGTTCAAGTTGGTTGCCCTGTATTGCCTGGTGCAGATGCAGATATGCTTATGAAGCAGATGCAAAACAACAATCAACACCAGCAACAACAACAATATTCACAGCATCCGTTTCCAAGTCAACACCCTCAGAGTTCAAATCAACACCTCCAGCAGCAAGACAAGATCGTTGGTGCTGGCAGCATTACAGCTGGTGGTAGCATGTCTAACTCCTTTCAAGGCAATGATCAGGTTCCAAAGAATCAAATGGGGCGAAAGAGGAAGCAGCCAGTGTCATCTTCAGGTCCTGCCAATAGTTCAGGAACTGCTAATACCACTGGACCATCCCCTAGTTCACCTTCAACTCCTTCTACTCACACAGCAGGAGATGCGATCTCAATGCCAACTTTGGCCCATAATGGCGGTTCCTCAAAGTCTTTGCTTATGTTTGCTTCTGATGGTCTAGGCTCAGTTGCCTCAGCACCAAATAAATTGAATGATATGGACCGTTTTGTGGATGATGGATCTTTGGAGGATAATGTTGAATCATTCTTATCACATGATGATGCTGACCCTCAGGATAGAGTTGCTCGGTGTTCAGATGTCAGCAAAGGCTTCACTTTTTCGGAAGTCGGGGTTATTCCTGCAAGTGCAAGTAAAGTCGAGTGCTGTCACTTCTCAGCAGACGGGAAAACACTTGCAACTGGTGGGCATGACCGAAAGGCTGTATTGTGGTGTACAGAATCCTTCAACCCAAAGTCTACGCTTGAAGAGCATACTCAGTGGATAACAGATGTTAGATTCAGTCCTAGTATGTCAAGACTAGCTACATCCTCCGCTGACAAAACTGTCAGGGTTTGGGATGTTGATAATCCTGGCTATTCACTTCGTACTTTTATGGGACATTCTACAACTGTTATGTCACTTGACTTCCACCCTACTAAAGAGGATCTTCTGTGCTCTTGTGATAACAATAGTGAGATAAGATACTGGAGTATCAAGAATGGTAGTTGTGCTGGAGTTTTCAAGGGCGGTGCAACTCAGATGAGGTTTCAACCTCGTCTTGGAAGGATGCTTGCTGCTGCAGGTGATACTCTTGTCTCCATACTTGATGTAGAGACCCAAGTCTGCACGCTTAAATTACAGGGTCATAAAAACCTTGTCAATTCTGTGTGCTGGGATTCTTCTGGTGAGTACCTAGCTTCCGTGAGTGATGACTTGGTTAGAGTGTGGACGGTTGGCTCCAGTAGCAAAGGCGAATGCCTTTACGAATTAAGCTGTTCTGGCAACAAATTTCGGACATGCGTATTCCATCCCACTTATCCATCATTGTTGGTGATTGGCTGTTATGAGACATTGGAGCTTTGGAACATGACAGACAGCAAGACAATGACGCTGCATGCACATGACAAGCTAGTGTCGTCTTTGGCAGCATCAAGTTCTACTGGCATGGTAGCTTCAGCTAGCCATGATAAGTGTGTGAAGCTATGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

871

Amino Acids

95.63

Weight (kDa)

6.53

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 11 - 37 2.5e-07 LisH
WD40_Gbeta PF25391 576 - 717 1.2e-12 G protein beta WD-40 repeat protein
WD40_MABP1-WDR62_2nd PF24782 579 - 782 2.1e-14 MABP1/WDR62 second WD40 domain
Beta-prop_THOC3 PF25174 580 - 641 3e-07 THOC3 beta-propeller domain
EIF3I PF24805 580 - 662 4.4e-06 EIF3I
Beta-prop_TEP1_2nd PF25047 582 - 679 1.8e-12 TEP-1 second beta-propeller
WD40_WDHD1_1st PF24817 583 - 662 1.2e-10 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 589 - 714 5.6e-26 WDR5 beta-propeller domain
WD40_Prp19 PF24814 589 - 783 7.1e-30 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 589 - 704 1.7e-21 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 589 - 708 4.6e-18 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3 PF25174 590 - 662 1.8e-15 THOC3 beta-propeller domain
Beta-prop_EML PF23409 591 - 709 7.5e-06 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_2nd PF25172 592 - 703 1.2e-10 WDR3 second beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 596 - 662 9.7e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 619 - 716 1.1e-07 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 621 - 711 2.4e-12 CDC20/Fizzy WD40 domain
WD40 PF00400 622 - 659 1.1e-09 WD domain, G-beta repeat
WDR55 PF24796 624 - 869 2.3e-11 WDR55
Beta-prop_WDR36-Utp21_2nd PF25168 624 - 696 5.1e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3 PF25174 630 - 869 8.5e-36 THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 641 - 746 1.1e-06 WDR90/POC16, second beta-propeller
Beta-prop_WDR3_2nd PF25172 669 - 783 4.2e-07 WDR3 second beta-propeller domain
EIF3I PF24805 671 - 868 7.9e-07 EIF3I
Beta-prop_WDR36-Utp21_2nd PF25168 690 - 788 4.3e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 691 - 827 3.5e-14 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 716 - 868 4.6e-24 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 717 - 794 3.7e-09 WDHD1 first WD40 domain
WD40_Prp19 PF24814 718 - 868 9.9e-14 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 733 - 834 3.9e-06 CDC20/Fizzy WD40 domain
WD40 PF00400 747 - 782 2.8e-07 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 759 - 869 1.3e-07 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 704, 2192
AasI GACNNNNNNGTC 1 cut(s) 1964
Acc36I ACCTGC 2 cut(s) 704, 2192
AccI GTMKAC 1 cut(s) 1877
AciI CCGC 3 cut(s) 1539, 1953, 2148
AclI AACGTT 1 cut(s) 1113
AclWI GGATC 8 cut(s) 119, 524, 537, 874, 895, 1141, 1648, 2073
AcoI YGGCCR 1 cut(s) 718
AcsI RAATTY 4 cut(s) 948, 964, 1039, 2408
AcuI CTGAAG 6 cut(s) 86, 126, 882, 938, 1401, 2559
AdeI CACNNNGTG 1 cut(s) 149
AfaI GTAC 5 cut(s) 748, 1122, 1855, 2008, 2312
AfiI CCNNNNNNNGG 4 cut(s) 612, 1130, 1630, 2180
AjnI CCWGG 8 cut(s) 145, 727, 751, 805, 943, 1026, 1165, 1990
AloI GAACNNNNNNTCC 2 cut(s) 1125, 1157
Alw21I GWGCWC 1 cut(s) 2078
Alw26I GTCTC 6 cut(s) 236, 729, 884, 2221, 2228, 2462
AlwI GGATC 8 cut(s) 119, 524, 537, 874, 895, 1141, 1648, 2073
AlwNI CAGNNNCTG 3 cut(s) 128, 1424, 1442
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 6 cut(s) 3, 12, 718, 926, 1029, 1527
ApoI RAATTY 4 cut(s) 948, 964, 1039, 2408
ArsI GACNNNNNNTTYG 2 cut(s) 674, 706
Asp700I GAANNNNTTC 1 cut(s) 115
AspS9I GGNCC 7 cut(s) 486, 857, 1030, 1421, 1457, 1528, 1621
AsuHPI GGTGA 7 cut(s) 665, 709, 1128, 1464, 2216, 2318, 2464
AsuII TTCGAA 1 cut(s) 162
AsuNHI GCTAGC 1 cut(s) 2579
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 5 cut(s) 486, 857, 1421, 1457, 1621
AxyI CCTNAGG 1 cut(s) 1692
BaeI ACNNNNGTAYC 6 cut(s) 2095, 2095, 2128, 2128, 2199, 2232
BalI TGGCCA 1 cut(s) 720
BamHI GGATCC 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 2078
BbvCI CCTCAGC 1 cut(s) 1594
BccI CCATC 8 cut(s) 476, 868, 1060, 1468, 1568, 1631, 2436, 2449
BcgI CGANNNNNNTGC 4 cut(s) 209, 243, 1498, 1532
BciT130I CCWGG 8 cut(s) 147, 729, 753, 807, 945, 1028, 1167, 1992
BclI TGATCA 1 cut(s) 1363
BcoDI GTCTC 6 cut(s) 236, 729, 884, 2221, 2228, 2462
BfaI CTAG 9 cut(s) 198, 1074, 1467, 1580, 1926, 1940, 2315, 2531, 2580
BfmI CTRYAG 3 cut(s) 120, 129, 2199
BfuAI ACCTGC 2 cut(s) 704, 2192
BglI GCCNNNNNGGC 1 cut(s) 11
BlpI GCTNAGC 1 cut(s) 333
Bme1390I CCNGG 8 cut(s) 147, 729, 753, 807, 945, 1028, 1167, 1992
Bme18I GGWCC 5 cut(s) 486, 857, 1421, 1457, 1621
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 7 cut(s) 486, 857, 1030, 1421, 1457, 1528, 1621
BmiI GGNNCC 6 cut(s) 487, 488, 531, 1371, 1543, 2359
BmrFI CCNGG 8 cut(s) 147, 729, 753, 807, 945, 1028, 1167, 1992
BmtI GCTAGC 1 cut(s) 2583
BoxI GACNNNNGTC 1 cut(s) 2240
BpmI CTGGAG 8 cut(s) 774, 938, 992, 1010, 1271, 2128, 2154, 2344
Bpu10I CCTNAGC 1 cut(s) 1594
Bpu1102I GCTNAGC 1 cut(s) 333
Bpu14I TTCGAA 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 681
BsaI GGTCTC 2 cut(s) 884, 2228
BsaJI CCNNGG 2 cut(s) 805, 883
BsaXI ACNNNNNCTCC 2 cut(s) 1008, 1038
Bsc4I CCNNNNNNNGG 4 cut(s) 612, 1130, 1630, 2180
Bse1I ACTGG 8 cut(s) 721, 1059, 1406, 1459, 1825, 2111, 2361, 2566
Bse21I CCTNAGG 1 cut(s) 1692
Bse3DI GCAATG 1 cut(s) 1366
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 8 cut(s) 147, 729, 753, 807, 945, 1028, 1167, 1992
BseDI CCNNGG 2 cut(s) 805, 883
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 4 cut(s) 612, 1130, 1630, 2180
BseMI GCAATG 1 cut(s) 1366
BseNI ACTGG 8 cut(s) 721, 1059, 1406, 1459, 1825, 2111, 2361, 2566
BseYI CCCAGC 2 cut(s) 282, 2292
BsgI GTGCAG 2 cut(s) 1191, 2230
BshFI GGCC 6 cut(s) 5, 14, 720, 928, 1031, 1529
BsiHKAI GWGCWC 1 cut(s) 2078
BsiHKCI CYCGRG 1 cut(s) 261
BslFI GGGAC 2 cut(s) 499, 2031
BslI CCNNNNNNNGG 4 cut(s) 612, 1130, 1630, 2180
BsmAI GTCTC 6 cut(s) 236, 729, 884, 2221, 2228, 2462
BsmFI GGGAC 2 cut(s) 499, 2031
BsmI GAATGC 1 cut(s) 2381
BsnI GGCC 6 cut(s) 5, 14, 720, 928, 1031, 1529
Bso31I GGTCTC 2 cut(s) 884, 2228
BsoBI CYCGRG 1 cut(s) 261
Bsp119I TTCGAA 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 2078
Bsp1407I TGTACA 1 cut(s) 1853
Bsp1720I GCTNAGC 1 cut(s) 333
Bsp19I CCATGG 1 cut(s) 883
BspACI CCGC 3 cut(s) 1539, 1953, 2148
BspANI GGCC 6 cut(s) 5, 14, 720, 928, 1031, 1529
BspLI GGNNCC 6 cut(s) 487, 488, 531, 1371, 1543, 2359
BspMAI CTGCAG 1 cut(s) 2203
BspMI ACCTGC 2 cut(s) 704, 2192
BspOI GCTAGC 1 cut(s) 2583
BspPI GGATC 8 cut(s) 119, 524, 537, 874, 895, 1141, 1648, 2073
BspQI GCTCTTC 1 cut(s) 1881
BspT104I TTCGAA 1 cut(s) 162
BspTNI GGTCTC 2 cut(s) 884, 2228
BsrDI GCAATG 1 cut(s) 1366
BsrGI TGTACA 1 cut(s) 1853
BsrI ACTGG 8 cut(s) 721, 1059, 1406, 1459, 1825, 2111, 2361, 2566
BssECI CCNNGG 2 cut(s) 805, 883
BssT1I CCWWGG 1 cut(s) 883
Bst2UI CCWGG 8 cut(s) 147, 729, 753, 807, 945, 1028, 1167, 1992
Bst4CI ACNGT 5 cut(s) 937, 1625, 1966, 2032, 2353
Bst6I CTCTTC 3 cut(s) 62, 540, 1881
BstAPI GCANNNNNTGC 2 cut(s) 316, 1505
BstAUI TGTACA 1 cut(s) 1853
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 6 cut(s) 327, 1315, 2193, 2249, 2517, 2581
BstDSI CCRYGG 1 cut(s) 883
BstMAI GTCTC 6 cut(s) 236, 729, 884, 2221, 2228, 2462
BstNI CCWGG 8 cut(s) 147, 729, 753, 807, 945, 1028, 1167, 1992
BstNSI RCATGY 5 cut(s) 83, 329, 1342, 2421, 2519
BstPAI GACNNNNGTC 1 cut(s) 2240
BstSCI CCNGG 8 cut(s) 145, 727, 751, 805, 943, 1026, 1165, 1990
BstSFI CTRYAG 3 cut(s) 120, 129, 2199
BstX2I RGATCY 4 cut(s) 124, 529, 1640, 2065
BstXI CCANNNNNNTGG 2 cut(s) 728, 1066
BstYI RGATCY 4 cut(s) 124, 529, 1640, 2065
Bsu36I CCTNAGG 1 cut(s) 1692
BsuRI GGCC 6 cut(s) 5, 14, 720, 928, 1031, 1529
BtgI CCRYGG 1 cut(s) 883
BtsIMutI CAGTG 4 cut(s) 1066, 1413, 1452, 1904
BveI ACCTGC 2 cut(s) 704, 2192
Cac8I GCNNGC 6 cut(s) 327, 1315, 2193, 2249, 2517, 2581
CaiI CAGNNNCTG 3 cut(s) 128, 1424, 1442
Cfr13I GGNCC 7 cut(s) 486, 857, 1030, 1421, 1457, 1528, 1621
CseI GACGC 2 cut(s) 678, 2518
CsiI ACCWGGT 1 cut(s) 145
Csp6I GTAC 5 cut(s) 747, 1121, 1854, 2007, 2311
CviQI GTAC 5 cut(s) 747, 1121, 1854, 2007, 2311
DraIII CACNNNGTG 1 cut(s) 149
DrdI GACNNNNNNGTC 1 cut(s) 1964
DseDI GACNNNNNNGTC 1 cut(s) 1964
EaeI YGGCCR 1 cut(s) 718
Eam1104I CTCTTC 3 cut(s) 62, 540, 1881
EarI CTCTTC 3 cut(s) 62, 540, 1881
Eco130I CCWWGG 1 cut(s) 883
Eco31I GGTCTC 2 cut(s) 884, 2228
Eco47I GGWCC 5 cut(s) 486, 857, 1421, 1457, 1621
Eco57I CTGAAG 6 cut(s) 86, 126, 882, 938, 1401, 2559
Eco81I CCTNAGG 1 cut(s) 1692
Eco88I CYCGRG 1 cut(s) 261
EcoO109I RGGNCCY 2 cut(s) 486, 1421
EcoRI GAATTC 1 cut(s) 948
EcoRII CCWGG 8 cut(s) 145, 727, 751, 805, 943, 1026, 1165, 1990
EcoT14I CCWWGG 1 cut(s) 883
ErhI CCWWGG 1 cut(s) 883
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 2052, 2084
FaqI GGGAC 2 cut(s) 499, 2031
FbaI TGATCA 1 cut(s) 1363
FblI GTMKAC 1 cut(s) 1877
FspBI CTAG 9 cut(s) 198, 1074, 1467, 1580, 1926, 1940, 2315, 2531, 2580
GsaI CCCAGC 2 cut(s) 286, 2296
GsuI CTGGAG 8 cut(s) 774, 938, 992, 1010, 1271, 2128, 2154, 2344
HaeIII GGCC 6 cut(s) 5, 14, 720, 928, 1031, 1529
HgaI GACGC 2 cut(s) 678, 2518
HincII GTYRAC 1 cut(s) 1259
HindII GTYRAC 1 cut(s) 1259
HphI GGTGA 7 cut(s) 665, 709, 1128, 1464, 2216, 2318, 2464
Hpy166II GTNNAC 7 cut(s) 253, 749, 1259, 1472, 1854, 1878, 2349
Hpy188III TCNNGA 6 cut(s) 263, 860, 1437, 1694, 1935, 2116
Hpy8I GTNNAC 7 cut(s) 253, 749, 1259, 1472, 1854, 1878, 2349
HpyCH4III ACNGT 5 cut(s) 937, 1625, 1966, 2032, 2353
HpyCH4IV ACGT 1 cut(s) 1113
HpySE526I ACGT 1 cut(s) 1113
KflI GGGWCCC 1 cut(s) 486
Ksp22I TGATCA 1 cut(s) 1363
LguI GCTCTTC 1 cut(s) 1881
LmnI GCTCC 5 cut(s) 265, 503, 1011, 2363, 2476
MabI ACCWGGT 1 cut(s) 145
MaeI CTAG 9 cut(s) 198, 1074, 1467, 1580, 1926, 1940, 2315, 2531, 2580
MaeII ACGT 1 cut(s) 1113
MaeIII GTNAC 4 cut(s) 653, 1061, 1787, 2037
MboII GAAGA 7 cut(s) 79, 527, 764, 1407, 1898, 2060, 2292
MfeI CAATTG 1 cut(s) 16
MflI RGATCY 4 cut(s) 124, 529, 1640, 2065
MhlI GDGCHC 1 cut(s) 2078
MlsI TGGCCA 1 cut(s) 720
MluNI TGGCCA 1 cut(s) 720
MlyI GAGTC 3 cut(s) 238, 673, 907
MmeI TCCRAC 1 cut(s) 18
Mox20I TGGCCA 1 cut(s) 720
MroXI GAANNNNTTC 1 cut(s) 115
MscI TGGCCA 1 cut(s) 720
MseI TTAA 4 cut(s) 498, 993, 2253, 2390
MslI CAYNNNNRTG 2 cut(s) 1680, 2520
Msp20I TGGCCA 1 cut(s) 720
MspA1I CMGCKG 3 cut(s) 227, 1328, 1955
MspR9I CCNGG 8 cut(s) 147, 729, 753, 807, 945, 1028, 1167, 1992
MunI CAATTG 1 cut(s) 16
Mva1269I GAATGC 1 cut(s) 2381
MvaI CCWGG 8 cut(s) 147, 729, 753, 807, 945, 1028, 1167, 1992
NcoI CCATGG 1 cut(s) 883
NheI GCTAGC 1 cut(s) 2579
NlaIV GGNNCC 6 cut(s) 487, 488, 531, 1371, 1543, 2359
NmuCI GTSAC 4 cut(s) 653, 1061, 1787, 2037
NspI RCATGY 5 cut(s) 83, 329, 1342, 2421, 2519
NspV TTCGAA 1 cut(s) 162
PaeI GCATGC 2 cut(s) 329, 2519
PaqCI CACCTGC 2 cut(s) 704, 2192
PciSI GCTCTTC 1 cut(s) 1881
PctI GAATGC 1 cut(s) 2381
PdmI GAANNNNTTC 1 cut(s) 115
PfeI GAWTC 9 cut(s) 289, 677, 769, 793, 1378, 1661, 1859, 1917, 2297
PleI GAGTC 3 cut(s) 238, 672, 907
PpsI GAGTC 3 cut(s) 238, 672, 907
PpuMI RGGWCCY 2 cut(s) 486, 1421
PshAI GACNNNNGTC 1 cut(s) 2240
Psp1406I AACGTT 1 cut(s) 1113
Psp5II RGGWCCY 2 cut(s) 486, 1421
Psp6I CCWGG 8 cut(s) 145, 727, 751, 805, 943, 1026, 1165, 1990
PspFI CCCAGC 2 cut(s) 282, 2292
PspGI CCWGG 8 cut(s) 145, 727, 751, 805, 943, 1026, 1165, 1990
PspN4I GGNNCC 6 cut(s) 487, 488, 531, 1371, 1543, 2359
PspPI GGNCC 7 cut(s) 486, 857, 1030, 1421, 1457, 1528, 1621
PspPPI RGGWCCY 2 cut(s) 486, 1421
PsrI GAACNNNNNNTAC 2 cut(s) 1432, 1464
PstI CTGCAG 1 cut(s) 2203
PstNI CAGNNNCTG 3 cut(s) 128, 1424, 1442
PsuI RGATCY 4 cut(s) 124, 529, 1640, 2065
PvuII CAGCTG 2 cut(s) 227, 1328
RsaI GTAC 5 cut(s) 748, 1122, 1855, 2008, 2312
RsaNI GTAC 5 cut(s) 747, 1121, 1854, 2007, 2311
RseI CAYNNNNRTG 2 cut(s) 1680, 2520
SapI GCTCTTC 1 cut(s) 1881
SaqAI TTAA 4 cut(s) 498, 993, 2253, 2390
Sau96I GGNCC 7 cut(s) 486, 857, 1030, 1421, 1457, 1528, 1621
SchI GAGTC 3 cut(s) 238, 673, 907
ScrFI CCNGG 8 cut(s) 147, 729, 753, 807, 945, 1028, 1167, 1992
SduI GDGCHC 1 cut(s) 2078
SexAI ACCWGGT 1 cut(s) 145
SfcI CTRYAG 3 cut(s) 120, 129, 2199
SfiI GGCCNNNNNGGCC 1 cut(s) 11
SfuI TTCGAA 1 cut(s) 162
SinI GGWCC 5 cut(s) 486, 857, 1421, 1457, 1621
SmiMI CAYNNNNRTG 2 cut(s) 1680, 2520
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
SphI GCATGC 2 cut(s) 329, 2519
SsiI CCGC 3 cut(s) 1539, 1953, 2148
SspI AATATT 1 cut(s) 1235
SspMI CTAG 9 cut(s) 198, 1074, 1467, 1580, 1926, 1940, 2315, 2531, 2580
StyD4I CCNGG 8 cut(s) 145, 727, 751, 805, 943, 1026, 1165, 1990
StyI CCWWGG 1 cut(s) 883
TaaI ACNGT 5 cut(s) 937, 1625, 1966, 2032, 2353
TaiI ACGT 1 cut(s) 1116
TaqI TCGA 3 cut(s) 162, 940, 1779
TaqII GACCGA 1 cut(s) 1848
TatI WGTACW 1 cut(s) 1853
TfiI GAWTC 9 cut(s) 289, 677, 769, 793, 1378, 1661, 1859, 1917, 2297
Tru1I TTAA 4 cut(s) 498, 993, 2253, 2390
Tru9I TTAA 4 cut(s) 498, 993, 2253, 2390
TscAI CASTG 4 cut(s) 1066, 1413, 1459, 1904
TseFI GTSAC 4 cut(s) 653, 1061, 1787, 2037
Tsp45I GTSAC 4 cut(s) 653, 1061, 1787, 2037
TspDTI ATGAA 4 cut(s) 222, 854, 909, 1205
TspGWI ACGGA 3 cut(s) 542, 1236, 2311
TspRI CASTG 4 cut(s) 1066, 1413, 1459, 1904
VpaK11BI GGWCC 5 cut(s) 486, 857, 1421, 1457, 1621
XapI RAATTY 4 cut(s) 948, 964, 1039, 2408
XceI RCATGY 5 cut(s) 83, 329, 1342, 2421, 2519
XcmI CCANNNNNNNNNTGG 1 cut(s) 497
XmiI GTMKAC 1 cut(s) 1877
XmnI GAANNNNTTC 1 cut(s) 115
XspI CTAG 9 cut(s) 198, 1074, 1467, 1580, 1926, 1940, 2315, 2531, 2580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.