Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008049.1

Orthogroup ID

OG0000670

Physical Location & Seq

Genomic Coordinates Reverse (-)

163139 .. 165092

Gene Structure 1954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008049.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgtctcagactaactgggaagctgataaaatgttagatgtctatatccatgattatctagtgaaaagagacttaaaggcttctgctcaagctttccaagctgaagggaaggtgtcatctgatcccgttgctattgatgcaccgggaggttttctatttgaatggtggtcagttttctgggatatatttattgctaggaccaatgagaagcattcagaagttgctgcatcttacatcgagtcgccggcggtggttgaccgagttgctgacgcggcagtgctgaagcagatgttgacgtggcttgggctggacctcttctgcttttgggctttaggtcaccagttcaggtatcttgaggccagttcaggtgatgatttttcggctccggtaatctgggatcaggctgcagcttatggtggagtatggcagcaggaggcagggaggaaggcttcgaacagggcagaaaggttttcagtatttccgggggccggttcgggtattttcctacctgttctgaaggtggctccgccggttctggcttcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LisH WD40

Protein Analysis

181

Amino Acids

20.02

Weight (kDa)

4.87

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32551 AT4G32551
fragaria_vesca	FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica	MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica	Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis	pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis	RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata	RLG00000010283 RLG00000016050
rosa_multiflora	Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii	Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa	Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha	Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana	Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	272
AciI	CCGC	3 cut(s)	248, 272, 527
AclWI	GGATC	2 cut(s)	116, 405
AcuI	CTGAAG	3 cut(s)	123, 302, 536
AfiI	CCNNNNNNNGG	1 cut(s)	488
AgsI	TTSAA	1 cut(s)	161
AjiI	CACGTC	1 cut(s)	297
AluBI	AGCT	4 cut(s)	23, 92, 101, 410
AluI	AGCT	4 cut(s)	23, 92, 101, 410
Alw26I	GTCTC	2 cut(s)	9, 63
AlwI	GGATC	2 cut(s)	116, 405
AoxI	GGCC	2 cut(s)	357, 486
ApeKI	GCWGC	4 cut(s)	224, 404, 407, 427
AspS9I	GGNCC	3 cut(s)	198, 310, 486
AsuC2I	CCSGG	2 cut(s)	144, 483
AsuHPI	GGTGA	2 cut(s)	329, 380
AsuII	TTCGAA	1 cut(s)	452
AvaII	GGWCC	2 cut(s)	198, 310
BbvI	GCAGC	4 cut(s)	211, 391, 419, 439
BcnI	CCSGG	2 cut(s)	144, 483
BcoDI	GTCTC	2 cut(s)	9, 63
BfaI	CTAG	3 cut(s)	59, 195, 544
BfmI	CTRYAG	1 cut(s)	405
BisI	GCNGC	5 cut(s)	225, 273, 405, 408, 428
BlsI	GCNGC	5 cut(s)	226, 274, 406, 409, 429
Bme1390I	CCNGG	2 cut(s)	144, 483
Bme18I	GGWCC	2 cut(s)	198, 310
BmgBI	CACGTC	1 cut(s)	297
BmgT120I	GGNCC	3 cut(s)	198, 310, 486
BmiI	GGNNCC	3 cut(s)	384, 487, 525
BmrFI	CCNGG	2 cut(s)	144, 483
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	2 cut(s)	127, 236
BmuI	ACTGGG	1 cut(s)	25
Bpu14I	TTCGAA	1 cut(s)	452
BpuEI	CTTGAG	2 cut(s)	72, 374
BpuMI	CCSGG	2 cut(s)	144, 483
BsaJI	CCNNGG	1 cut(s)	482
BsaWI	WCCGGW	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse118I	RCCGGY	3 cut(s)	244, 488, 529
Bse1I	ACTGG	3 cut(s)	20, 340, 360
BseDI	CCNNGG	1 cut(s)	482
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	3 cut(s)	20, 340, 360
BseXI	GCAGC	4 cut(s)	211, 391, 419, 439
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	359, 488
BsiSI	CCGG	6 cut(s)	143, 245, 386, 482, 489, 530
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	2 cut(s)	9, 63
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	359, 488
Bsp119I	TTCGAA	1 cut(s)	452
Bsp143I	GATC	2 cut(s)	121, 397
BspACI	CCGC	3 cut(s)	248, 272, 527
BspANI	GGCC	2 cut(s)	359, 488
BspCNI	CTCAG	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	3 cut(s)	384, 487, 525
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	2 cut(s)	116, 405
BspT104I	TTCGAA	1 cut(s)	452
BsrFI	RCCGGY	3 cut(s)	244, 488, 529
BsrI	ACTGG	3 cut(s)	20, 340, 360
BssAI	RCCGGY	3 cut(s)	244, 488, 529
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	2 cut(s)	121, 397
Bst6I	CTCTTC	1 cut(s)	320
BstBI	TTCGAA	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	6
BstEII	GGTNACC	1 cut(s)	335
BstFNI	CGCG	1 cut(s)	272
BstKTI	GATC	2 cut(s)	124, 400
BstMAI	GTCTC	2 cut(s)	9, 63
BstMBI	GATC	2 cut(s)	121, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 137, 272
BstPI	GGTNACC	1 cut(s)	335
BstSCI	CCNGG	2 cut(s)	142, 481
BstSFI	CTRYAG	1 cut(s)	405
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	4 cut(s)	211, 391, 419, 439
BsuRI	GGCC	2 cut(s)	359, 488
BtrI	CACGTC	1 cut(s)	297
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	246
Cfr10I	RCCGGY	3 cut(s)	244, 488, 529
Cfr13I	GGNCC	3 cut(s)	198, 310, 486
CseI	GACGC	1 cut(s)	278
CviAII	CATG	1 cut(s)	50
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	123, 399
DpnII	GATC	2 cut(s)	121, 397
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
EciI	GGCGGA	1 cut(s)	516
Eco47I	GGWCC	2 cut(s)	198, 310
Eco57I	CTGAAG	3 cut(s)	123, 302, 536
Eco91I	GGTNACC	1 cut(s)	335
EcoO65I	GGTNACC	1 cut(s)	335
FaeI	CATG	1 cut(s)	53
FaiI	YATR	5 cut(s)	45, 51, 185, 414, 424
FatI	CATG	1 cut(s)	49
Fnu4HI	GCNGC	5 cut(s)	225, 273, 405, 408, 428
Fsp4HI	GCNGC	5 cut(s)	225, 273, 405, 408, 428
FspBI	CTAG	3 cut(s)	59, 195, 544
GluI	GCNGC	5 cut(s)	225, 273, 405, 408, 428
HaeIII	GGCC	2 cut(s)	359, 488
HapII	CCGG	6 cut(s)	143, 245, 386, 482, 489, 530
HgaI	GACGC	1 cut(s)	278
Hin1II	CATG	1 cut(s)	53
HincII	GTYRAC	2 cut(s)	256, 294
HindII	GTYRAC	2 cut(s)	256, 294
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	6 cut(s)	143, 245, 386, 482, 489, 530
HphI	GGTGA	2 cut(s)	329, 380
Hpy166II	GTNNAC	2 cut(s)	256, 294
Hpy188I	TCNGA	4 cut(s)	9, 121, 217, 516
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	2 cut(s)	256, 294
HpyAV	CCTTC	4 cut(s)	98, 103, 439, 511
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	3 cut(s)	140, 227, 407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 137, 272
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	53
KroI	GCCGGC	1 cut(s)	244
KroNI	GCCGGC	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	121, 397
LmnI	GCTCC	2 cut(s)	388, 529
Lsp1109I	GCAGC	4 cut(s)	211, 391, 419, 439
LweI	GCATC	2 cut(s)	127, 236
MaeI	CTAG	3 cut(s)	59, 195, 544
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	2 cut(s)	123, 399
MboI	GATC	2 cut(s)	121, 397
MboII	GAAGA	1 cut(s)	307
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	5 cut(s)	140, 323, 349, 427, 435
MreI	CGCCGGCG	1 cut(s)	244
MroNI	GCCGGC	1 cut(s)	244
MseI	TTAA	1 cut(s)	74
MspI	CCGG	6 cut(s)	143, 245, 386, 482, 489, 530
MspR9I	CCNGG	2 cut(s)	144, 483
Mva1269I	GAATGC	1 cut(s)	211
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	3 cut(s)	98, 137, 272
NaeI	GCCGGC	1 cut(s)	246
NciI	CCSGG	2 cut(s)	144, 483
NdeII	GATC	2 cut(s)	121, 397
NgoMIV	GCCGGC	1 cut(s)	244
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	3 cut(s)	384, 487, 525
NmuCI	GTSAC	1 cut(s)	335
NspV	TTCGAA	1 cut(s)	452
PctI	GAATGC	1 cut(s)	211
PdiI	GCCGGC	1 cut(s)	246
PkrI	GCNGC	5 cut(s)	226, 274, 406, 409, 429
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PspEI	GGTNACC	1 cut(s)	335
PspN4I	GGNNCC	3 cut(s)	384, 487, 525
PspPI	GGNCC	3 cut(s)	198, 310, 486
PstI	CTGCAG	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	5 cut(s)	225, 273, 405, 408, 428
Sau3AI	GATC	2 cut(s)	121, 397
Sau96I	GGNCC	3 cut(s)	198, 310, 486
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	144, 483
SfaNI	GCATC	2 cut(s)	127, 236
SfcI	CTRYAG	1 cut(s)	405
SfuI	TTCGAA	1 cut(s)	452
SgrAI	CRCCGGYG	1 cut(s)	244
SinI	GGWCC	2 cut(s)	198, 310
SmlI	CTYRAG	2 cut(s)	87, 353
SmoI	CTYRAG	2 cut(s)	87, 353
SsiI	CCGC	3 cut(s)	248, 272, 527
SspMI	CTAG	3 cut(s)	59, 195, 544
StyD4I	CCNGG	2 cut(s)	142, 481
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	2 cut(s)	237, 452
TaqII	GACCGA	1 cut(s)	273
TauI	GCSGC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	4 cut(s)	224, 404, 407, 427
Tsp45I	GTSAC	1 cut(s)	335
TspRI	CASTG	1 cut(s)	282
VpaK11BI	GGWCC	2 cut(s)	198, 310
XspI	CTAG	3 cut(s)	59, 195, 544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.