Rh6AG517700

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000670
Physical Location & Seq
Reverse (-)
68798149 .. 68804268
6120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG517700.1

Sequence Viewer

Length: 1878 bp
ATGTCTCAGACTAACTGGGAAGCTGATAAAATGTTAGATGTCTATATCCATGATTATCTAGTGAAAAGAGACTTAAAGGCTTCTGCTCAAGCTTTCCAAGCTGAAGGGAAGGTGTCGTCTGATCCCGTTGCTATTGATGCACCGGGAGGTTTTCTATTTGAATGGTGGTCAGTTTTCTGGGATATATTTATTGCTAGGACCAATGAGAAGCATTCAGAGGTTGCTGCATCTTACATCGAGAGATTTGGTGAGAATGTGGGCCAGCTTTTGGATCAAAATCATGCTTCAATATTAAAGTCAGCTGCAGCAGCTGGTCAGCCTTCAGGGCAAGTTTTGCATGGTACAGCCGGTGGGATGACTCAACAAGTCCAAGCTCGAAATCAGCAACTGCCAGGATCTACGCCGGATATAAAGACAGAAATTAATCCTGTATTGAATCCAAGAGCTCCCGAGGGATCATTGATGGGAATTCCAGGGTCTAATCAGGGTGGTAACAATCTGACTTTGAAAGGATGGCCACTCACAGGTCTGGATCAACTTCGCTCTGGACTTCTTCAGCAACAAAAACCTTTTATACAAGCTCCCCAGCCCTTTCATCAGCTTCAAATGCTGACACCACAACACCAGCAACAACTTATGCTTGCCCAGCAAAATTTGACATCCCCATCTGCCAGTGATGATAGTAGAAGACTAAGAATGCTATTGAATAATCGAAGTATGGGGCTTGGAAAGGATGGCCTTTCAAATTCTGTTGGCGATGTAGTGCCAAATGTAGGATCACCTCTTCAAGCTCCAGGCTCTATGATGCCTCGTGGAGATACAGATATGCTGATGAAGTTAAAAATGGCTCAACTACAGCAACAGCAGAATAGTAATCCACAACAACAGCTTCAGCAGCATGCTCTTTCTGCTCAGCAGTTGCAAAGTTCAAATCATAATCCTCATCAGCAAGATAAAATGGGGGGTGCTGGCAGCATCACAATGGATGCTAGCATGTCAAACTCTTTTCGAGGAAATGATCAGGTCACAAAAAACCAGCCTGGGAGGAAGAGAAAGCAGCCAGTGTCATCTTCAGGCCCTGCCAATAGCACGGGAACAGCAAACACAGCTGGACCTTCCCCGAGTTCAGCTCCTTCCACTCCTTCAACCCACACTCCTGGTGATGTAATATCAATGCCTGCCTTACCCCATAGTGGTGGTTCCTCTAAGCCTCTGATGATGTTTGGTGCTGATGGTACTGGTACGCTCACCTCACCCTCAAATCCACTGATTTCCACCCGAACAAGGACGACCTTATATGTTCCTGTGATGGGGACGGTGAGATACGCTACTGGAGTATTAACAATGGCAGCTGTGCAAGAGTTTTCAAGGTACCGTGTACAGCATATTAGGGGTGCAGAAGTTGAGTGGGGTGGGACGACTCAGGTGAGATTCCAACCTCGTCTTGGAAGATATCTTGCTGCAGCAGCTGAGAATATTGTATCTATACTGGATGTGGAGTCACAGGCTTGTCGGCATTCATTACAGGGACATACAAAGCCTATTAATTCTGTGTGCTGGGATCCTTCTGGTGAGTTCCTTGCATCCCTGAGTGAGGACTTTGTCAAAGTTTGGACTTTCGGATCAGGAAATGAAGGGGCATGTGTTCATGAATTGAACTGTAATGGCAATAAATTTCATTCCTGTGTTTTCCATCCAACATATACTTCACTGCTGGTCGTTGGTTGTTACCAGTCTTTGGAGCTATGGAACATGCAAGAGAACAAGACAATGACTCTATCAGCACATGAAGGTCTTATTGCTTCGTTGGCTGTGTCAACCGTAACGGGTTTGGTTGCTTCAGCTAGTCACGATAAGTGGGTTAAGCTCTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

625

Amino Acids

67.55

Weight (kDa)

8.15

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 10 - 36 1.2e-06 LisH
Beta-prop_THOC3 PF25174 460 - 571 4.4e-12 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 473 - 624 1.3e-24 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 473 - 625 3.9e-09 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 474 - 624 2.1e-17 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 474 - 584 7.8e-10 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 474 - 557 1e-09 WDHD1 first WD40 domain
WD40_Gbeta PF25391 477 - 624 2e-07 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st PF25171 483 - 618 1.7e-07 WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz PF24807 484 - 624 4.4e-08 CDC20/Fizzy WD40 domain
WD40 PF00400 504 - 538 4.8e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1371
AccB1I GGYRCC 1 cut(s) 1371
AccB7I CCANNNNNTGG 2 cut(s) 268, 1738
AclWI GGATC 9 cut(s) 116, 279, 403, 463, 540, 784, 1556, 1569, 1630
AcoI YGGCCR 1 cut(s) 515
AcsI RAATTY 4 cut(s) 468, 652, 745, 1673
AcuI CTGAAG 6 cut(s) 123, 306, 539, 875, 1056, 1824
AfaI GTAC 5 cut(s) 343, 1237, 1243, 1373, 1380
AfiI CCNNNNNNNGG 9 cut(s) 268, 524, 773, 1193, 1284, 1310, 1445, 1594, 1738
AjnI CCWGG 5 cut(s) 391, 472, 793, 1039, 1156
AjuI GAANNNNNNNTTGG 2 cut(s) 1690, 1722
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 2 cut(s) 9, 63
AlwI GGATC 9 cut(s) 116, 279, 403, 463, 540, 784, 1556, 1569, 1630
AlwNI CAGNNNCTG 4 cut(s) 311, 388, 1079, 1469
Ama87I CYCGRG 2 cut(s) 449, 1120
AoxI GGCC 4 cut(s) 259, 515, 736, 1075
ApoI RAATTY 4 cut(s) 468, 652, 745, 1673
AseI ATTAAT 2 cut(s) 423, 1545
Asp718I GGTACC 1 cut(s) 1371
AspS9I GGNCC 4 cut(s) 198, 259, 1076, 1112
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 8 cut(s) 260, 771, 1172, 1240, 1245, 1330, 1438, 1583
AsuNHI GCTAGC 1 cut(s) 989
AvaI CYCGRG 2 cut(s) 449, 1120
AvaII GGWCC 2 cut(s) 198, 1112
BalI TGGCCA 1 cut(s) 517
BamHI GGATCC 1 cut(s) 1561
BanI GGYRCC 1 cut(s) 1371
BanII GRGCYC 1 cut(s) 448
BauI CACGAG 1 cut(s) 810
BbsI GAAGAC 1 cut(s) 694
Bbv12I GWGCWC 1 cut(s) 448
BccI CCATC 7 cut(s) 457, 507, 673, 728, 1226, 1303, 1701
BciT130I CCWGG 5 cut(s) 393, 474, 795, 1041, 1158
BclI TGATCA 1 cut(s) 1018
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 9, 63
BfaI CTAG 4 cut(s) 59, 195, 990, 1845
BfmI CTRYAG 3 cut(s) 303, 854, 1461
BglI GCCNNNNNGGC 1 cut(s) 325
BlpI GCTNAGC 1 cut(s) 912
Bme1390I CCNGG 6 cut(s) 144, 393, 474, 795, 1041, 1158
Bme18I GGWCC 2 cut(s) 198, 1112
BmeT110I CYCGRG 2 cut(s) 449, 1120
BmgT120I GGNCC 4 cut(s) 198, 259, 1076, 1112
BmiI GGNNCC 3 cut(s) 1201, 1373, 1563
BmrFI CCNGG 6 cut(s) 144, 393, 474, 795, 1041, 1158
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 6 cut(s) 127, 236, 795, 976, 984, 1592
BmtI GCTAGC 1 cut(s) 993
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 694
BplI GAGNNNNNCTC 2 cut(s) 1114, 1146
BpmI CTGGAG 2 cut(s) 777, 1353
Bpu1102I GCTNAGC 1 cut(s) 912
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 144
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 3 cut(s) 450, 473, 1040
BsaXI ACNNNNNCTCC 2 cut(s) 1138, 1168
Bsc4I CCNNNNNNNGG 9 cut(s) 268, 524, 773, 1193, 1284, 1310, 1445, 1594, 1738
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 7 cut(s) 20, 672, 1061, 1243, 1336, 1494, 1732
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 5 cut(s) 393, 474, 795, 1041, 1158
BseDI CCNNGG 3 cut(s) 450, 473, 1040
BseGI GGATG 8 cut(s) 360, 518, 659, 739, 991, 1498, 1583, 1693
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 9 cut(s) 268, 524, 773, 1193, 1284, 1310, 1445, 1594, 1738
BseMII CTCAG 5 cut(s) 20, 926, 1436, 1461, 1580
BseNI ACTGG 7 cut(s) 20, 672, 1061, 1243, 1336, 1494, 1732
BseYI CCCAGC 3 cut(s) 585, 645, 1557
BsgI GTGCAG 1 cut(s) 1416
BshFI GGCC 4 cut(s) 261, 517, 738, 1077
BshNI GGYRCC 1 cut(s) 1371
BsiHKAI GWGCWC 1 cut(s) 448
BsiHKCI CYCGRG 2 cut(s) 449, 1120
BsiSI CCGG 3 cut(s) 143, 348, 404
BslFI GGGAC 3 cut(s) 1327, 1429, 1542
BslI CCNNNNNNNGG 9 cut(s) 268, 524, 773, 1193, 1284, 1310, 1445, 1594, 1738
BsmAI GTCTC 2 cut(s) 9, 63
BsmFI GGGAC 3 cut(s) 1327, 1429, 1542
BsmI GAATGC 3 cut(s) 211, 702, 1516
BsnI GGCC 4 cut(s) 261, 517, 738, 1077
BsoBI CYCGRG 2 cut(s) 449, 1120
Bsp1286I GDGCHC 1 cut(s) 448
Bsp1407I TGTACA 1 cut(s) 1378
Bsp143I GATC 9 cut(s) 121, 271, 395, 455, 532, 776, 1018, 1561, 1622
Bsp1720I GCTNAGC 1 cut(s) 912
BspANI GGCC 4 cut(s) 261, 517, 738, 1077
BspCNI CTCAG 5 cut(s) 19, 925, 1435, 1462, 1581
BspHI TCATGA 1 cut(s) 1648
BspLI GGNNCC 3 cut(s) 1201, 1373, 1563
BspMAI CTGCAG 2 cut(s) 307, 1465
BspOI GCTAGC 1 cut(s) 993
BspPI GGATC 9 cut(s) 116, 279, 403, 463, 540, 784, 1556, 1569, 1630
BspT107I GGYRCC 1 cut(s) 1371
BsrFI RCCGGY 1 cut(s) 347
BsrGI TGTACA 1 cut(s) 1378
BsrI ACTGG 7 cut(s) 20, 672, 1061, 1243, 1336, 1494, 1732
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 3 cut(s) 450, 473, 1040
BssMI GATC 9 cut(s) 121, 271, 395, 455, 532, 776, 1018, 1561, 1622
BssSI CACGAG 1 cut(s) 810
Bst2BI CACGAG 1 cut(s) 810
Bst2UI CCWGG 5 cut(s) 393, 474, 795, 1041, 1158
Bst4CI ACNGT 4 cut(s) 1318, 1376, 1661, 1822
Bst6I CTCTTC 2 cut(s) 789, 1043
BstAPI GCANNNNNTGC 1 cut(s) 334
BstAUI TGTACA 1 cut(s) 1378
BstC8I GCNNGC 6 cut(s) 263, 642, 900, 970, 991, 1179
BstDEI CTNAG 7 cut(s) 6, 692, 912, 1206, 1422, 1470, 1589
BstENI CCTNNNNNAGG 1 cut(s) 1592
BstF5I GGATG 8 cut(s) 360, 518, 659, 739, 991, 1498, 1583, 1693
BstKTI GATC 9 cut(s) 124, 274, 398, 458, 535, 779, 1021, 1564, 1625
BstMAI GTCTC 2 cut(s) 9, 63
BstMBI GATC 9 cut(s) 121, 271, 395, 455, 532, 776, 1018, 1561, 1622
BstNI CCWGG 5 cut(s) 393, 474, 795, 1041, 1158
BstNSI RCATGY 4 cut(s) 902, 997, 1644, 1756
BstSCI CCNGG 6 cut(s) 142, 391, 472, 793, 1039, 1156
BstSFI CTRYAG 3 cut(s) 303, 854, 1461
BstV2I GAAGAC 1 cut(s) 694
BstX2I RGATCY 2 cut(s) 395, 1561
BstXI CCANNNNNNTGG 2 cut(s) 1157, 1196
BstYI RGATCY 2 cut(s) 395, 1561
BsuRI GGCC 4 cut(s) 261, 517, 738, 1077
BtgZI GCGATG 1 cut(s) 771
BtsCI GGATG 8 cut(s) 360, 518, 659, 739, 991, 1498, 1583, 1693
BtsI GCAGTG 1 cut(s) 1709
BtsIMutI CAGTG 4 cut(s) 679, 1068, 1265, 1709
Cac8I GCNNGC 6 cut(s) 263, 642, 900, 970, 991, 1179
CaiI CAGNNNCTG 4 cut(s) 311, 388, 1079, 1469
CciI TCATGA 1 cut(s) 1648
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 4 cut(s) 198, 259, 1076, 1112
Csp6I GTAC 5 cut(s) 342, 1236, 1242, 1372, 1379
CviAII CATG 9 cut(s) 50, 281, 338, 899, 994, 1641, 1649, 1753, 1787
CviQI GTAC 5 cut(s) 342, 1236, 1242, 1372, 1379
DdeI CTNAG 7 cut(s) 6, 692, 912, 1206, 1422, 1470, 1589
DpnI GATC 9 cut(s) 123, 273, 397, 457, 534, 778, 1020, 1563, 1624
DpnII GATC 9 cut(s) 121, 271, 395, 455, 532, 776, 1018, 1561, 1622
EaeI YGGCCR 1 cut(s) 515
Eam1104I CTCTTC 2 cut(s) 789, 1043
EarI CTCTTC 2 cut(s) 789, 1043
Ecl136II GAGCTC 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 448
Eco32I GATATC 1 cut(s) 1454
Eco47I GGWCC 2 cut(s) 198, 1112
Eco53kI GAGCTC 1 cut(s) 446
Eco57I CTGAAG 6 cut(s) 123, 306, 539, 875, 1056, 1824
Eco88I CYCGRG 2 cut(s) 449, 1120
EcoICRI GAGCTC 1 cut(s) 446
EcoNI CCTNNNNNAGG 1 cut(s) 1592
EcoO109I RGGNCCY 1 cut(s) 1076
EcoRI GAATTC 1 cut(s) 468
EcoRII CCWGG 5 cut(s) 391, 472, 793, 1039, 1156
EcoRV GATATC 1 cut(s) 1454
EcoT38I GRGCYC 1 cut(s) 448
FaeI CATG 9 cut(s) 53, 284, 341, 902, 997, 1644, 1652, 1756, 1790
FaqI GGGAC 3 cut(s) 1327, 1429, 1542
FatI CATG 9 cut(s) 49, 280, 337, 898, 993, 1640, 1648, 1752, 1786
FbaI TGATCA 1 cut(s) 1018
FokI GGATG 8 cut(s) 367, 525, 646, 746, 998, 1505, 1570, 1680
FriOI GRGCYC 1 cut(s) 448
FspBI CTAG 4 cut(s) 59, 195, 990, 1845
GsaI CCCAGC 3 cut(s) 589, 649, 1561
GsuI CTGGAG 2 cut(s) 777, 1353
HaeIII GGCC 4 cut(s) 261, 517, 738, 1077
HapII CCGG 3 cut(s) 143, 348, 404
Hin1II CATG 9 cut(s) 53, 284, 341, 902, 997, 1644, 1652, 1756, 1790
HincII GTYRAC 1 cut(s) 1818
HindII GTYRAC 1 cut(s) 1818
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 6 cut(s) 358, 436, 1420, 1431, 1499, 1774
HpaII CCGG 3 cut(s) 143, 348, 404
HphI GGTGA 8 cut(s) 260, 771, 1172, 1240, 1245, 1330, 1438, 1583
Hpy166II GTNNAC 2 cut(s) 1379, 1818
Hpy188I TCNGA 6 cut(s) 9, 121, 217, 501, 1215, 1622
Hpy188III TCNNGA 8 cut(s) 238, 449, 530, 546, 1626, 1649, 1850, 1870
Hpy8I GTNNAC 2 cut(s) 1379, 1818
HpyAV CCTTC 9 cut(s) 98, 103, 330, 1125, 1143, 1152, 1575, 1628, 1784
HpyCH4III ACNGT 4 cut(s) 1318, 1376, 1661, 1822
HpyF3I CTNAG 7 cut(s) 6, 692, 912, 1206, 1422, 1470, 1589
Hsp92II CATG 9 cut(s) 53, 284, 341, 902, 997, 1644, 1652, 1756, 1790
KpnI GGTACC 1 cut(s) 1375
Ksp22I TGATCA 1 cut(s) 1018
Kzo9I GATC 9 cut(s) 121, 271, 395, 455, 532, 776, 1018, 1561, 1622
LmnI GCTCC 5 cut(s) 451, 586, 796, 1135, 1741
LweI GCATC 6 cut(s) 127, 236, 795, 976, 984, 1592
MaeI CTAG 4 cut(s) 59, 195, 990, 1845
MaeIII GTNAC 6 cut(s) 491, 1024, 1500, 1727, 1822, 1847
MalI GATC 9 cut(s) 123, 273, 397, 457, 534, 778, 1020, 1563, 1624
MboI GATC 9 cut(s) 121, 271, 395, 455, 532, 776, 1018, 1561, 1622
MboII GAAGA 6 cut(s) 545, 699, 776, 1060, 1062, 1461
MflI RGATCY 2 cut(s) 395, 1561
MhlI GDGCHC 1 cut(s) 448
MlsI TGGCCA 1 cut(s) 517
MluCI AATT 7 cut(s) 420, 468, 652, 745, 1546, 1652, 1673
MluNI TGGCCA 1 cut(s) 517
MlyI GAGTC 4 cut(s) 352, 1414, 1508, 1768
MmeI TCCRAC 2 cut(s) 1459, 1721
Mox20I TGGCCA 1 cut(s) 517
MscI TGGCCA 1 cut(s) 517
MseI TTAA 7 cut(s) 74, 293, 423, 839, 1340, 1545, 1863
MslI CAYNNNNRTG 3 cut(s) 980, 1194, 1683
Msp20I TGGCCA 1 cut(s) 517
MspA1I CMGCKG 5 cut(s) 302, 311, 1109, 1352, 1469
MspI CCGG 3 cut(s) 143, 348, 404
MspR9I CCNGG 6 cut(s) 144, 393, 474, 795, 1041, 1158
Mva1269I GAATGC 3 cut(s) 211, 702, 1516
MvaI CCWGG 5 cut(s) 393, 474, 795, 1041, 1158
NciI CCSGG 1 cut(s) 144
NdeII GATC 9 cut(s) 121, 271, 395, 455, 532, 776, 1018, 1561, 1622
NheI GCTAGC 1 cut(s) 989
NlaIII CATG 9 cut(s) 53, 284, 341, 902, 997, 1644, 1652, 1756, 1790
NlaIV GGNNCC 3 cut(s) 1201, 1373, 1563
NmuCI GTSAC 3 cut(s) 1024, 1500, 1847
NspI RCATGY 4 cut(s) 902, 997, 1644, 1756
PaeI GCATGC 1 cut(s) 902
PagI TCATGA 1 cut(s) 1648
PctI GAATGC 3 cut(s) 211, 702, 1516
PfeI GAWTC 2 cut(s) 436, 1431
PflFI GACNNNGTC 1 cut(s) 1601
PflMI CCANNNNNTGG 2 cut(s) 268, 1738
PleI GAGTC 4 cut(s) 352, 1414, 1507, 1768
PpsI GAGTC 4 cut(s) 352, 1414, 1507, 1768
PshBI ATTAAT 2 cut(s) 423, 1545
Psp124BI GAGCTC 1 cut(s) 448
Psp6I CCWGG 5 cut(s) 391, 472, 793, 1039, 1156
PspFI CCCAGC 3 cut(s) 585, 645, 1557
PspGI CCWGG 5 cut(s) 391, 472, 793, 1039, 1156
PspN4I GGNNCC 3 cut(s) 1201, 1373, 1563
PspPI GGNCC 4 cut(s) 198, 259, 1076, 1112
PstI CTGCAG 2 cut(s) 307, 1465
PstNI CAGNNNCTG 4 cut(s) 311, 388, 1079, 1469
PsuI RGATCY 2 cut(s) 395, 1561
PsyI GACNNNGTC 1 cut(s) 1601
PvuII CAGCTG 5 cut(s) 302, 311, 1109, 1352, 1469
RsaI GTAC 5 cut(s) 343, 1237, 1243, 1373, 1380
RsaNI GTAC 5 cut(s) 342, 1236, 1242, 1372, 1379
RseI CAYNNNNRTG 3 cut(s) 980, 1194, 1683
SacI GAGCTC 1 cut(s) 448
SaqAI TTAA 7 cut(s) 74, 293, 423, 839, 1340, 1545, 1863
Sau3AI GATC 9 cut(s) 121, 271, 395, 455, 532, 776, 1018, 1561, 1622
Sau96I GGNCC 4 cut(s) 198, 259, 1076, 1112
SchI GAGTC 4 cut(s) 352, 1414, 1508, 1768
ScrFI CCNGG 6 cut(s) 144, 393, 474, 795, 1041, 1158
SduI GDGCHC 1 cut(s) 448
SfaNI GCATC 6 cut(s) 127, 236, 795, 976, 984, 1592
SfcI CTRYAG 3 cut(s) 303, 854, 1461
SinI GGWCC 2 cut(s) 198, 1112
SmiMI CAYNNNNRTG 3 cut(s) 980, 1194, 1683
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
SphI GCATGC 1 cut(s) 902
Sse9I AATT 7 cut(s) 420, 468, 652, 745, 1546, 1652, 1673
SspI AATATT 2 cut(s) 291, 1477
SspMI CTAG 4 cut(s) 59, 195, 990, 1845
SstI GAGCTC 1 cut(s) 448
StyD4I CCNGG 6 cut(s) 142, 391, 472, 793, 1039, 1156
TaaI ACNGT 4 cut(s) 1318, 1376, 1661, 1822
TaqI TCGA 4 cut(s) 237, 376, 712, 1009
TasI AATT 7 cut(s) 420, 468, 652, 745, 1546, 1652, 1673
TatI WGTACW 1 cut(s) 1378
TfiI GAWTC 2 cut(s) 436, 1431
Tru1I TTAA 7 cut(s) 74, 293, 423, 839, 1340, 1545, 1863
Tru9I TTAA 7 cut(s) 74, 293, 423, 839, 1340, 1545, 1863
TscAI CASTG 4 cut(s) 679, 1068, 1272, 1716
TseFI GTSAC 3 cut(s) 1024, 1500, 1847
Tsp45I GTSAC 3 cut(s) 1024, 1500, 1847
TspDTI ATGAA 8 cut(s) 584, 848, 1509, 1637, 1647, 1665, 1667, 1803
TspRI CASTG 4 cut(s) 679, 1068, 1272, 1716
Tth111I GACNNNGTC 1 cut(s) 1601
Van91I CCANNNNNTGG 2 cut(s) 268, 1738
VpaK11BI GGWCC 2 cut(s) 198, 1112
VspI ATTAAT 2 cut(s) 423, 1545
XagI CCTNNNNNAGG 1 cut(s) 1592
XapI RAATTY 4 cut(s) 468, 652, 745, 1673
XceI RCATGY 4 cut(s) 902, 997, 1644, 1756
XcmI CCANNNNNNNNNTGG 1 cut(s) 1442
XspI CTAG 4 cut(s) 59, 195, 990, 1845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.