Rh2DG047900

Transcriptional corepressor LEUNIG-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000670
Physical Location & Seq
Forward (+)
3420351 .. 3427356
7006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG047900.1

Sequence Viewer

Length: 2571 bp
ATGGCTCAGGCCAATTGGGAAGCTGATAAAATGTTGGATGTGTATATATATGATTACCTTCTGAAGAGAAATTTACATGCTTCTGCAAAGGCATTTCAAGCTGAAGGAAAAGTTTCTACAGATCCTGTAGCTATTGATGCACCCGGTGGCTTTCTTTTCGAATGGTGGTCTGTCTTCTGGGACATATTCATCGCTAGGACTAATGAAAAGCACTCTGAAGCAGCTGCATCTTATATTGAGACTCAAGTGAACAAGGCTCGGGAGCTGCAACAGAAGCCTCAGCAGCATCCTCAAATGCAAATGCAGCATCTTTTGCAAAGGCATGCTGCTCAGCAGCATCAACAACAGCAACAACAACAACAACAACACCAGCAACAACAACACCCGCAACAACACCCGCAACACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAGACGAGATGGGACCCAACTTCTTAATGGAACTTCCAATGGGCTTGTTGGCACTGATCCTCTTTCGAGGCAGAACTCTGCAACCGCAAATGTCATGGCAACAAAAATGTACGAGGACAGATTAAAGCCTCCCATACAGAGGGATGCTTTGGATGATGCGGCTATGAAGCAAAGGTTAGGTGACAATATGAATCAGCTTATGGATTCAAATCGTGCATCATTGGTGAAAGTAGCCACAGCAGGTGGCCAGTCTCCCGGTCAAATGCTGCATGGTACACCTGGAGGTATGTTGGGGAATCTTCAACAAGCTCACAATCGGAGTCAGCAACTTCCTGGATTGATGCAGGACATAAAGAGTGAGATAATGAACCCCAGAGCTGCTGGTCCAGAAGGATCATTGATTGGTCTTCATGGATCAAATGAAGGCAGTAGCAATTTGACTCTGAAGGGGTGGCCTTTAACGGTTCGACCTGGAATTCTTCAGCAGCAAAATTCCATGATGCAGTCCTCTCAGCCCTTTAATCAGCTTCAGCTCCAGCAGCAACTTCTACTTCAAAATTTAGCTTCCCCATCTACCAATGACTTGGAAACTAGAAGGCTATCGATGCTCCTCAATAGAAATATACCTAACGTTGATGTACCTAACGTTGGATCGCCTGTTCAAGTGGGTTGCCCTGTAATGCCTGGTGCAGATGCAGATATGATTATGAAGCAACAGCAGCTGCAAAGCAACAATCAACACCAACAACAGCAACAGTATTCACAGCATCCATTTTCGAGTCAACACCCTCAGAGTTCGAATCAACACATCCAGCAGCAAGAAAAGATCACTGGTGCTGGCAGCTTTACAGCTGGTGGTAGCATGTCTAACTCCTTTCAAGGCAATGATCAGGCTCCAAAGAATCAAATGGGGCGGAAGAGGAAGCAGCCAGTGTCATCTTCAGGTCCTGCCAATAGTTCAGGGACTGCTAATACCACTGGACCATCCCCCAGTTCACCTTCAACGCCTTCTACTCACACGGCAGGAGATGCGAACTCTGTGCCAACTTTGGCCCATAATAGCGGTTCCTCGAAGTCTCTGCTTATGTTTGCTTCTGATGGTCTAGGCTCAGTTGCCTCGGTGCCAAATAAACTGAATGATATGGACCGATTTGTGGATGATGGATCTTTAGAGGATAATGTTGAATCATTCTTATCACATGATGATGCTGACCCTAGGGATAGAGTTGCTCGGTGTTCAGATGTCAGCAAAGGCTTCACTTTTTCGGAAGTTAGGGCTATTACTGCAAGTTCAAGTAAAGTCGAGTGCTGTCACTTCTCAGCAGATGGGAAAACACTTGCCACTGGAGGGCATGATCGAAAGGCTGTGTTGTGGTCTACAGAGTCCTTCACTGTAAAGTCTACGCTTGAAGAGCATTCTCAGTGGATAACGGATGTTCGATTCAGTCCTAGTATGTCAAGGCTAGCTACATCTTCCGCTGACAAAACTGTCAGGGTCTGGGATGTTGATAATCCTGGCTATTCACTTCGTACTTTTATGGGACATTCTACAACTGTTATGTCACTTGACTTCCACCCTACTAAAGAGGATCTTCTGTGCTCTTGTGATAACAACAGTGAGATAAGATACTGGAGTATCAAGAATGGTAGTTGTATTGGAGTTTCCAAGGGTGGTGCAACTCAGATGAGGTTTCAACCTCGTCTTGGAAGGATGCTTGCTGCTGCAGGTGATACTCTTGTATCCATAATTGATGTAGAGACCGAATGTTGCACGCTTAAATTACAGGGTCATAAGAAACTTGTCAATTCTGTTTGCTGGGATTCTTCTGGTGAGTATCTAGCCTCTGTGAGTGATGACTCAGTTAGAGTATGGGCAGTTGGCTCCAGTAGCAAAGGCGAATGCCTTTACGAGTTACCCTGTTCTGGCAACAAATTTCAGACATGCGTCTTCCATCCTACTTATCCATCATTGTTGGTAATCGGCTGTTATGAGACATTGGAACTTTGGAACATGAGCGAGAACAAGACAATGACCTTGCATGCACATGACAACCTAGTATCTTCTTTGGCAGCGTCAAGTTCCACTGGCATGGTAGCTTCAGCTAGCCATGATAAGTTCGTGAAGCTATGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

856

Amino Acids

93.97

Weight (kDa)

6.58

Isoelectric Point (pI)

51.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 10 - 36 2.4e-07 LisH
WD40_Gbeta PF25391 563 - 699 4.4e-12 G protein beta WD-40 repeat protein
WD40_MABP1-WDR62_2nd PF24782 565 - 769 7.9e-16 MABP1/WDR62 second WD40 domain
Beta-prop_THOC3 PF25174 565 - 628 2.3e-09 THOC3 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 566 - 690 1.7e-13 TEP-1 second beta-propeller
EIF3I PF24805 566 - 649 7.5e-07 EIF3I
WD40_CDC20-Fz PF24807 567 - 698 1.4e-16 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 568 - 770 2.2e-15 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 570 - 649 1e-11 WDHD1 first WD40 domain
Beta-prop_EML_2 PF23414 570 - 695 2.8e-19 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 573 - 691 9.1e-23 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 574 - 698 3.6e-26 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 574 - 689 5.3e-08 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 575 - 771 5.8e-32 Prp19 WD40 domain
Beta-prop_EML PF23409 577 - 696 5e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 582 - 649 2.9e-07 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 611 - 646 3.3e-09 WD domain, G-beta repeat
WDR55 PF24796 611 - 856 1.4e-12 WDR55
Beta-prop_THOC3 PF25174 617 - 856 2e-38 THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 629 - 732 6.6e-07 WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 677 - 775 3.9e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 685 - 799 3.1e-12 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 703 - 855 1.1e-24 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 705 - 856 1.2e-13 WDHD1 first WD40 domain
WD40_Prp19 PF24814 706 - 855 8.4e-14 Prp19 WD40 domain
WD40_Gbeta PF25391 707 - 855 2.3e-07 G protein beta WD-40 repeat protein
WD40_CDC20-Fz PF24807 719 - 845 1.6e-07 CDC20/Fizzy WD40 domain
WD40 PF00400 735 - 769 9.8e-08 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 746 - 856 9.4e-08 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 665, 2150
AasI GACNNNNNNGTC 1 cut(s) 1922
Acc36I ACCTGC 2 cut(s) 665, 2150
AccB1I GGYRCC 1 cut(s) 1555
AccI GTMKAC 2 cut(s) 1811, 1835
AciI CCGC 7 cut(s) 386, 398, 519, 593, 1348, 1497, 1911
AclI AACGTT 2 cut(s) 1065, 1080
AclWI GGATC 7 cut(s) 116, 485, 835, 856, 1093, 1606, 2031
AcoI YGGCCR 1 cut(s) 679
AcsI RAATTY 5 cut(s) 70, 909, 925, 991, 2366
AcuI CTGAAG 8 cut(s) 83, 123, 237, 899, 899, 947, 1359, 2517
AdeI CACNNNGTG 1 cut(s) 146
AfaI GTAC 4 cut(s) 545, 709, 1074, 1966
AfiI CCNNNNNNNGG 6 cut(s) 573, 1082, 1588, 1782, 2138, 2357
AjnI CCWGG 5 cut(s) 712, 766, 904, 1117, 1948
AloI GAACNNNNNNTCC 2 cut(s) 1077, 1109
Alw21I GWGCWC 1 cut(s) 2036
Alw26I GTCTC 5 cut(s) 233, 690, 1515, 2186, 2420
AlwI GGATC 7 cut(s) 116, 485, 835, 856, 1093, 1606, 2031
AlwNI CAGNNNCTG 5 cut(s) 125, 1156, 1382, 1400, 1932
Ama87I CYCGRG 1 cut(s) 258
AoxI GGCC 4 cut(s) 9, 679, 887, 1485
ApoI RAATTY 5 cut(s) 70, 909, 925, 991, 2366
Asp700I GAANNNNTTC 1 cut(s) 112
AspA2I CCTAGG 1 cut(s) 1649
AspS9I GGNCC 6 cut(s) 447, 818, 1379, 1415, 1486, 1579
AsuC2I CCSGG 2 cut(s) 144, 690
AsuHPI GGTGA 5 cut(s) 626, 670, 1422, 2174, 2276
AsuII TTCGAA 2 cut(s) 159, 1232
AsuNHI GCTAGC 2 cut(s) 1897, 2537
AvaI CYCGRG 1 cut(s) 258
AvaII GGWCC 5 cut(s) 447, 818, 1379, 1415, 1579
AvrII CCTAGG 1 cut(s) 1649
BaeI ACNNNNGTAYC 8 cut(s) 2053, 2053, 2086, 2086, 2157, 2157, 2190, 2190
BalI TGGCCA 1 cut(s) 681
BanI GGYRCC 1 cut(s) 1555
BbsI GAAGAC 3 cut(s) 166, 833, 2374
Bbv12I GWGCWC 1 cut(s) 2036
BbvCI CCTCAGC 1 cut(s) 279
BccI CCATC 8 cut(s) 437, 1012, 1426, 1526, 1589, 1754, 2394, 2407
BceAI ACGGC 1 cut(s) 1470
BcgI CGANNNNNNTGC 4 cut(s) 1456, 1490, 1495, 1529
BciT130I CCWGG 5 cut(s) 714, 768, 906, 1119, 1950
BciVI GTATCC 1 cut(s) 2185
BclI TGATCA 1 cut(s) 1321
BcnI CCSGG 2 cut(s) 144, 690
BcoDI GTCTC 5 cut(s) 233, 690, 1515, 2186, 2420
BfaI CTAG 9 cut(s) 195, 1026, 1538, 1650, 1884, 1898, 2273, 2489, 2538
BfmI CTRYAG 4 cut(s) 117, 126, 1812, 2157
BfuAI ACCTGC 2 cut(s) 665, 2150
BfuI GTATCC 1 cut(s) 2185
BlnI CCTAGG 1 cut(s) 1649
BlpI GCTNAGC 1 cut(s) 330
Bme1390I CCNGG 7 cut(s) 144, 690, 714, 768, 906, 1119, 1950
Bme18I GGWCC 5 cut(s) 447, 818, 1379, 1415, 1579
BmeT110I CYCGRG 1 cut(s) 258
BmgT120I GGNCC 6 cut(s) 447, 818, 1379, 1415, 1486, 1579
BmiI GGNNCC 6 cut(s) 448, 449, 1329, 1501, 1557, 2317
BmrFI CCNGG 7 cut(s) 144, 690, 714, 768, 906, 1119, 1950
BmrI ACTGGG 1 cut(s) 1419
BmtI GCTAGC 2 cut(s) 1901, 2541
BmuI ACTGGG 1 cut(s) 1419
BoxI GACNNNNGTC 1 cut(s) 2378
BpiI GAAGAC 3 cut(s) 166, 833, 2374
BpmI CTGGAG 5 cut(s) 735, 953, 1800, 2086, 2302
Bpu10I CCTNAGC 2 cut(s) 6, 279
Bpu1102I GCTNAGC 1 cut(s) 330
Bpu14I TTCGAA 2 cut(s) 159, 1232
BpuEI CTTGAG 1 cut(s) 228
BpuMI CCSGG 2 cut(s) 144, 690
Bsa29I ATCGAT 1 cut(s) 1037
BsaBI GATNNNNATC 1 cut(s) 642
BsaI GGTCTC 1 cut(s) 2186
BsaJI CCNNGG 3 cut(s) 1551, 1649, 2100
Bsc4I CCNNNNNNNGG 6 cut(s) 573, 1082, 1588, 1782, 2138, 2357
Bse1I ACTGG 9 cut(s) 682, 1270, 1364, 1417, 1425, 1783, 2069, 2319, 2524
Bse3DI GCAATG 1 cut(s) 1324
Bse8I GATNNNNATC 1 cut(s) 642
BseBI CCWGG 5 cut(s) 714, 768, 906, 1119, 1950
BseCI ATCGAT 1 cut(s) 1037
BseDI CCNNGG 3 cut(s) 1551, 1649, 2100
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 6 cut(s) 573, 1082, 1588, 1782, 2138, 2357
BseMI GCAATG 1 cut(s) 1324
BseNI ACTGG 9 cut(s) 682, 1270, 1364, 1417, 1425, 1783, 2069, 2319, 2524
BseRI GAGGAG 1 cut(s) 1034
BseYI CCCAGC 1 cut(s) 2250
BsgI GTGCAG 1 cut(s) 1143
BshFI GGCC 4 cut(s) 11, 681, 889, 1487
BshNI GGYRCC 1 cut(s) 1555
BshVI ATCGAT 1 cut(s) 1037
BsiHKAI GWGCWC 1 cut(s) 2036
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 2 cut(s) 144, 690
BslFI GGGAC 4 cut(s) 194, 460, 1411, 1989
BslI CCNNNNNNNGG 6 cut(s) 573, 1082, 1588, 1782, 2138, 2357
BsmAI GTCTC 5 cut(s) 233, 690, 1515, 2186, 2420
BsmFI GGGAC 4 cut(s) 194, 460, 1411, 1989
BsmI GAATGC 2 cut(s) 1849, 2339
BsnI GGCC 4 cut(s) 11, 681, 889, 1487
Bso31I GGTCTC 1 cut(s) 2186
BsoBI CYCGRG 1 cut(s) 258
Bsp119I TTCGAA 2 cut(s) 159, 1232
Bsp1286I GDGCHC 1 cut(s) 2036
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 7 cut(s) 386, 398, 519, 593, 1348, 1497, 1911
BspANI GGCC 4 cut(s) 11, 681, 889, 1487
BspDI ATCGAT 1 cut(s) 1037
BspLI GGNNCC 6 cut(s) 448, 449, 1329, 1501, 1557, 2317
BspMAI CTGCAG 1 cut(s) 2161
BspMI ACCTGC 2 cut(s) 665, 2150
BspOI GCTAGC 2 cut(s) 1901, 2541
BspPI GGATC 7 cut(s) 116, 485, 835, 856, 1093, 1606, 2031
BspQI GCTCTTC 1 cut(s) 1839
BspT104I TTCGAA 2 cut(s) 159, 1232
BspT107I GGYRCC 1 cut(s) 1555
BspTNI GGTCTC 1 cut(s) 2186
BsrDI GCAATG 1 cut(s) 1324
BsrI ACTGG 9 cut(s) 682, 1270, 1364, 1417, 1425, 1783, 2069, 2319, 2524
BssECI CCNNGG 3 cut(s) 1551, 1649, 2100
BssT1I CCWWGG 2 cut(s) 1649, 2100
Bst2UI CCWGG 5 cut(s) 714, 768, 906, 1119, 1950
Bst4CI ACNGT 6 cut(s) 898, 1191, 1828, 1924, 1990, 2051
Bst6I CTCTTC 3 cut(s) 59, 1346, 1839
BstAPI GCANNNNNTGC 2 cut(s) 313, 1463
BstBI TTCGAA 2 cut(s) 159, 1232
BstC8I GCNNGC 7 cut(s) 324, 1273, 1899, 2151, 2207, 2475, 2539
BstMAI GTCTC 5 cut(s) 233, 690, 1515, 2186, 2420
BstNI CCWGG 5 cut(s) 714, 768, 906, 1119, 1950
BstNSI RCATGY 5 cut(s) 80, 326, 1300, 2379, 2477
BstPAI GACNNNNGTC 1 cut(s) 2378
BstSCI CCNGG 7 cut(s) 142, 688, 712, 766, 904, 1117, 1948
BstSFI CTRYAG 4 cut(s) 117, 126, 1812, 2157
BstV2I GAAGAC 3 cut(s) 166, 833, 2374
BstX2I RGATCY 3 cut(s) 121, 1598, 2023
BstXI CCANNNNNNTGG 2 cut(s) 1018, 2524
BstYI RGATCY 3 cut(s) 121, 1598, 2023
Bsu15I ATCGAT 1 cut(s) 1037
BsuI GTATCC 1 cut(s) 2185
BsuRI GGCC 4 cut(s) 11, 681, 889, 1487
BsuTUI ATCGAT 1 cut(s) 1037
BtgZI GCGATG 1 cut(s) 175
BtsIMutI CAGTG 9 cut(s) 486, 1263, 1371, 1410, 1776, 1824, 1862, 2056, 2517
BveI ACCTGC 2 cut(s) 665, 2150
Cac8I GCNNGC 7 cut(s) 324, 1273, 1899, 2151, 2207, 2475, 2539
CaiI CAGNNNCTG 5 cut(s) 125, 1156, 1382, 1400, 1932
Cfr13I GGNCC 6 cut(s) 447, 818, 1379, 1415, 1486, 1579
ClaI ATCGAT 1 cut(s) 1037
CseI GACGC 2 cut(s) 2368, 2496
Csp6I GTAC 4 cut(s) 544, 708, 1073, 1965
CviQI GTAC 4 cut(s) 544, 708, 1073, 1965
DraIII CACNNNGTG 1 cut(s) 146
DrdI GACNNNNNNGTC 1 cut(s) 1922
DseDI GACNNNNNNGTC 1 cut(s) 1922
EaeI YGGCCR 1 cut(s) 679
Eam1104I CTCTTC 3 cut(s) 59, 1346, 1839
EarI CTCTTC 3 cut(s) 59, 1346, 1839
EciI GGCGGA 1 cut(s) 1363
Eco130I CCWWGG 2 cut(s) 1649, 2100
Eco31I GGTCTC 1 cut(s) 2186
Eco47I GGWCC 5 cut(s) 447, 818, 1379, 1415, 1579
Eco57I CTGAAG 8 cut(s) 83, 123, 237, 899, 899, 947, 1359, 2517
Eco88I CYCGRG 1 cut(s) 258
EcoO109I RGGNCCY 2 cut(s) 447, 1379
EcoRI GAATTC 1 cut(s) 909
EcoRII CCWGG 5 cut(s) 712, 766, 904, 1117, 1948
EcoT14I CCWWGG 2 cut(s) 1649, 2100
ErhI CCWWGG 2 cut(s) 1649, 2100
FalI AAGNNNNNCTT 2 cut(s) 2010, 2042
FaqI GGGAC 4 cut(s) 194, 460, 1411, 1989
FauI CCCGC 2 cut(s) 393, 405
FbaI TGATCA 1 cut(s) 1321
FblI GTMKAC 2 cut(s) 1811, 1835
FspBI CTAG 9 cut(s) 195, 1026, 1538, 1650, 1884, 1898, 2273, 2489, 2538
GsaI CCCAGC 1 cut(s) 2254
GsuI CTGGAG 5 cut(s) 735, 953, 1800, 2086, 2302
HaeIII GGCC 4 cut(s) 11, 681, 889, 1487
HapII CCGG 2 cut(s) 144, 690
HgaI GACGC 2 cut(s) 2368, 2496
HincII GTYRAC 1 cut(s) 1217
HindII GTYRAC 1 cut(s) 1217
HpaII CCGG 2 cut(s) 144, 690
HphI GGTGA 5 cut(s) 626, 670, 1422, 2174, 2276
Hpy166II GTNNAC 6 cut(s) 250, 710, 1217, 1430, 1812, 1836
Hpy188III TCNNGA 4 cut(s) 260, 821, 2074, 2554
Hpy8I GTNNAC 6 cut(s) 250, 710, 1217, 1430, 1812, 1836
HpyCH4III ACNGT 6 cut(s) 898, 1191, 1828, 1924, 1990, 2051
HpyCH4IV ACGT 2 cut(s) 1065, 1080
HpySE526I ACGT 2 cut(s) 1065, 1080
KflI GGGWCCC 1 cut(s) 447
Ksp22I TGATCA 1 cut(s) 1321
LguI GCTCTTC 1 cut(s) 1839
LmnI GCTCC 5 cut(s) 262, 972, 1047, 1333, 2321
MaeI CTAG 9 cut(s) 195, 1026, 1538, 1650, 1884, 1898, 2273, 2489, 2538
MaeII ACGT 2 cut(s) 1065, 1080
MaeIII GTNAC 4 cut(s) 614, 1745, 1995, 2346
MfeI CAATTG 1 cut(s) 13
MflI RGATCY 3 cut(s) 121, 1598, 2023
MhlI GDGCHC 1 cut(s) 2036
MlsI TGGCCA 1 cut(s) 681
MluNI TGGCCA 1 cut(s) 681
MlyI GAGTC 6 cut(s) 235, 763, 868, 1222, 1826, 2285
MmeI TCCRAC 2 cut(s) 15, 1063
Mox20I TGGCCA 1 cut(s) 681
MroXI GAANNNNTTC 1 cut(s) 112
MscI TGGCCA 1 cut(s) 681
MseI TTAA 5 cut(s) 459, 557, 893, 954, 2211
MslI CAYNNNNRTG 3 cut(s) 1638, 2478, 2522
Msp20I TGGCCA 1 cut(s) 681
MspA1I CMGCKG 4 cut(s) 224, 1156, 1286, 1913
MspI CCGG 2 cut(s) 144, 690
MspR9I CCNGG 7 cut(s) 144, 690, 714, 768, 906, 1119, 1950
MunI CAATTG 1 cut(s) 13
Mva1269I GAATGC 2 cut(s) 1849, 2339
MvaI CCWGG 5 cut(s) 714, 768, 906, 1119, 1950
NciI CCSGG 2 cut(s) 144, 690
NheI GCTAGC 2 cut(s) 1897, 2537
NlaIV GGNNCC 6 cut(s) 448, 449, 1329, 1501, 1557, 2317
NmuCI GTSAC 3 cut(s) 614, 1745, 1995
NspI RCATGY 5 cut(s) 80, 326, 1300, 2379, 2477
NspV TTCGAA 2 cut(s) 159, 1232
PaeI GCATGC 2 cut(s) 326, 2477
PaqCI CACCTGC 2 cut(s) 665, 2150
PciSI GCTCTTC 1 cut(s) 1839
PctI GAATGC 2 cut(s) 1849, 2339
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 8 cut(s) 625, 638, 730, 1234, 1336, 1619, 1875, 2255
PfoI TCCNGGA 1 cut(s) 766
PleI GAGTC 6 cut(s) 235, 762, 868, 1221, 1825, 2285
PpsI GAGTC 6 cut(s) 235, 762, 868, 1221, 1825, 2285
PpuMI RGGWCCY 2 cut(s) 447, 1379
PshAI GACNNNNGTC 1 cut(s) 2378
Psp1406I AACGTT 2 cut(s) 1065, 1080
Psp5II RGGWCCY 2 cut(s) 447, 1379
Psp6I CCWGG 5 cut(s) 712, 766, 904, 1117, 1948
PspFI CCCAGC 1 cut(s) 2250
PspGI CCWGG 5 cut(s) 712, 766, 904, 1117, 1948
PspN4I GGNNCC 6 cut(s) 448, 449, 1329, 1501, 1557, 2317
PspPI GGNCC 6 cut(s) 447, 818, 1379, 1415, 1486, 1579
PspPPI RGGWCCY 2 cut(s) 447, 1379
PstI CTGCAG 1 cut(s) 2161
PstNI CAGNNNCTG 5 cut(s) 125, 1156, 1382, 1400, 1932
PsuI RGATCY 3 cut(s) 121, 1598, 2023
PvuII CAGCTG 3 cut(s) 224, 1156, 1286
RsaI GTAC 4 cut(s) 545, 709, 1074, 1966
RsaNI GTAC 4 cut(s) 544, 708, 1073, 1965
RseI CAYNNNNRTG 3 cut(s) 1638, 2478, 2522
SapI GCTCTTC 1 cut(s) 1839
SaqAI TTAA 5 cut(s) 459, 557, 893, 954, 2211
Sau96I GGNCC 6 cut(s) 447, 818, 1379, 1415, 1486, 1579
SchI GAGTC 6 cut(s) 235, 763, 868, 1222, 1826, 2285
ScrFI CCNGG 7 cut(s) 144, 690, 714, 768, 906, 1119, 1950
SduI GDGCHC 1 cut(s) 2036
SfcI CTRYAG 4 cut(s) 117, 126, 1812, 2157
SfuI TTCGAA 2 cut(s) 159, 1232
SinI GGWCC 5 cut(s) 447, 818, 1379, 1415, 1579
SmiMI CAYNNNNRTG 3 cut(s) 1638, 2478, 2522
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
SphI GCATGC 2 cut(s) 326, 2477
SsiI CCGC 7 cut(s) 386, 398, 519, 593, 1348, 1497, 1911
SspMI CTAG 9 cut(s) 195, 1026, 1538, 1650, 1884, 1898, 2273, 2489, 2538
StyD4I CCNGG 7 cut(s) 142, 688, 712, 766, 904, 1117, 1948
StyI CCWWGG 2 cut(s) 1649, 2100
TaaI ACNGT 6 cut(s) 898, 1191, 1828, 1924, 1990, 2051
TaiI ACGT 2 cut(s) 1068, 1083
TaqII GACCGA 2 cut(s) 1596, 2210
TauI GCSGC 1 cut(s) 596
TfiI GAWTC 8 cut(s) 625, 638, 730, 1234, 1336, 1619, 1875, 2255
Tru1I TTAA 5 cut(s) 459, 557, 893, 954, 2211
Tru9I TTAA 5 cut(s) 459, 557, 893, 954, 2211
TscAI CASTG 9 cut(s) 493, 1270, 1371, 1417, 1783, 1831, 1862, 2056, 2524
TseFI GTSAC 3 cut(s) 614, 1745, 1995
Tsp45I GTSAC 3 cut(s) 614, 1745, 1995
TspDTI ATGAA 8 cut(s) 178, 219, 614, 638, 815, 833, 870, 1157
TspGWI ACGGA 1 cut(s) 1880
TspRI CASTG 9 cut(s) 493, 1270, 1371, 1417, 1783, 1831, 1862, 2056, 2524
VpaK11BI GGWCC 5 cut(s) 447, 818, 1379, 1415, 1579
XapI RAATTY 5 cut(s) 70, 909, 925, 991, 2366
XceI RCATGY 5 cut(s) 80, 326, 1300, 2379, 2477
XcmI CCANNNNNNNNNTGG 1 cut(s) 458
XmaJI CCTAGG 1 cut(s) 1649
XmiI GTMKAC 2 cut(s) 1811, 1835
XmnI GAANNNNTTC 1 cut(s) 112
XspI CTAG 9 cut(s) 195, 1026, 1538, 1650, 1884, 1898, 2273, 2489, 2538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.