RchiOBHm_Chr3g0465211

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000670
Physical Location & Seq
Reverse (-)
12039640 .. 12041600
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43137

Sequence Viewer

Length: 189 bp
ATGCTTTATGTTTATATTCATGATTGTTTGTTGAAAAGGAAATTGACTGCTTCTGCAAATACATTTATGAATGAAGGGAAGGTTGCTACAGATCCAATAGATTTGGATATGCAGCAATTGATGCACCAGGAGGGTTCCACTTTGAATGGGGGTATGTTTGTGGGACATATTCATTGCAAGGACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

62

Amino Acids

7.01

Weight (kDa)

6.37

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 86
AgsI TTSAA 2 cut(s) 34, 145
AjnI CCWGG 1 cut(s) 126
AlwI GGATC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 87
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
Bme1390I CCNGG 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 172
BseBI CCWGG 1 cut(s) 128
BseMI GCAATG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 124
BslFI GGGAC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 91
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 136
BspPI GGATC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 172
BssMI GATC 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 128
BstAPI GCANNNNNTGC 1 cut(s) 121
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
CciI TCATGA 1 cut(s) 19
CviAII CATG 1 cut(s) 20
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 126
FaeI CATG 1 cut(s) 23
FaiI YATR 7 cut(s) 9, 15, 21, 68, 110, 155, 168
FaqI GGGAC 1 cut(s) 177
FatI CATG 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 113
Hin1II CATG 1 cut(s) 23
Hpy188III TCNNGA 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 68, 73
HpyCH4V TGCA 4 cut(s) 56, 112, 124, 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
Hsp92II CATG 1 cut(s) 23
Kzo9I GATC 1 cut(s) 91
LpnPI CCDG 2 cut(s) 113, 140
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 1 cut(s) 111
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MfeI CAATTG 1 cut(s) 116
MflI RGATCY 1 cut(s) 91
MluCI AATT 2 cut(s) 41, 116
MnlI CCTC 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 128
MunI CAATTG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 1 cut(s) 91
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 1 cut(s) 136
PagI TCATGA 1 cut(s) 19
PkrI GCNGC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 136
PsuI RGATCY 1 cut(s) 91
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 128
SetI ASST 1 cut(s) 84
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 1 cut(s) 87
SgeI CNNG 3 cut(s) 32, 139, 140
Sse9I AATT 2 cut(s) 41, 116
StyD4I CCNGG 1 cut(s) 126
TasI AATT 2 cut(s) 41, 116
TseI GCWGC 1 cut(s) 112
TspDTI ATGAA 4 cut(s) 8, 83, 87, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.