pycom15g10550

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000670
Physical Location & Seq
Reverse (-)
7004632 .. 7012485
7854 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g10550.15

Sequence Viewer

Length: 2742 bp
ATGTCTCATACCAACTGGGAAGCTGATAAAATGCTGGATGTGTATATCCATGATTATCTAGTGAAGCGGGATTTAAAAGCCTCTGCACAAGCTTTCCAAGCAGAAGGAAAAGTATCCTCAGATCCCGTTGCTATTGATGCGCCGGGAGGTTTCCTATTTGAATGGTGGTCGGTTTTCTGGGATATATTCATTGCTAGGACTAATGAGAAACATTCAGAGGTTGCGGCATCTTACATTGAGTTGATTAAAGCAAGGGAGCAGCAACAGCAGCAGCAGCAACAACAACAACAGCAGCAACATTCCCAGCAACCGCAAAACTCACAACAACAGCAGCAGCAAATGCAAATGCAGCAACTCATGATGCAAAGGCATGCTCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAACAGCAGCAACCACAGCAGCAACAGCAACCGCCACAGCCGCAGCAGAGAAGAGATGGGGCACATCTTCTCAATGGAACTACAAATGGGCTTGTTGGAAATGATCCTCTCATGCGACAAAATCCTGGAACAGCGAATGCTATGGCTACAAAGATGTACGAGGAAAGATTAAAACTTCCTCTTCAGAGAGATGCTATGGATGATGCATCTATGAAGCAGAGATTTGGTGAAAATGTGGGCCAGATTTTGGATCAAAATCATGCTTCAATATTGAAGTCAGCTGCAGCAACCGGCCAGCCTTCAGGGCAAGTTTTGCATGGTACAGCTGGTGGGATGACTCAACAAGTCCAAGCTCGAAATCAGCAGTTGGCAGGGTCTACACCGGACATAAAGACTGAAATCAATCCAGTATTGAATCCCAGAGCTGCAGGTCCTGAGGGATCATTAATAGGAATTCCTGGATCAAATCAGGGTGGAAACAATTTGACTTTAAAAGGATGGCCGCTCACAGGTTTGGAGCAGCTTCGCTCTGGACTTCTTCAGCAACAGAAACCTTTCATACAAGCTCCCCAGCCCTTTCATCAGCTTCAGATGTTGACACCACAACACCAGCAACTTATGCTTGCTCAGCAAAATATGACATCACCGTCTGCTGCCAACGATGAAAGTAGAAGACTAAGAATGCTATTGAATCGTGGTCCTGGGAAGGATGGCCTTGCAAATTCTGTTGGTGACGTGGTACCAAATATAGGATCACCTCTTCAAGCTGGTGGCCCCATTTTGCCTCGTGGAGATCCAGATATGCTGATTAAGTTAAAAATGGCTCAACTTCAGCAGCAACAAAACAGCAATCCCCAACAGCAACAGCAACAGCTTCAACAGCACGCTCTTTCTAATCAGCAGTCACAAAATTCAAATCTCAATCCCCATCAGCAAGATAAAATGGGGGGTGCTGGCAGCATCACTATGGATGGTAGCATGTCGAATTCTTTTCGAGGAAATGATCAGGTTTCAAAAAACCAGCCAGGGAGAAAGAGAAAGCAGCCAGTGTCATCTTCAGGGCCTGCCAATAGCACAGGAACAGCAAACACAGCTGGGCCTTCCCCGAGTTCAGCCCCTTCAACTCCCTCGACTCACACTCCTGGAGATGTAATCTCAATGCCTGCCTTGCCCCATAGTGGTAGCTCCTCCAAGCCTCTGATGATGTTTGGCGCTGATGGTACTGGTACTCTTACATCACCATCACATCAGTTGTGGGATGATAAAGATCTTGAATTGCAGGCTGATATGGATCGATTTGTAGAGGATGGGTCTCTTGATGATAATGTCGAGTCTTTTTTATCCCCTGATGATGTGGATCATAGAGATGCTGTTGGTCGATGTATGGATGTCAGCAAAGGGTTCACATTTACAGAAGTAAACTCTGTTAAAGCAAGCGCAAGCAAGGTTACAAGTTGTCACTTCTCATCAGATGGAAAATTTCTTGCTAGTGGGGGCCATGATAAAAAGGCTGTATTGTGGTACACAGATACATTAAAGCCAAAAAGTACGCTAGAAGAACATTCAGCTTTGATAACTGATGTTCGTTTTAGTCCGAGCATGCCACGTCTTGCAACGTCTTCATTTGACAAGACTGTCAGGGTTTGGGATGCCGACAATCCTGGTTATTCTCTCCGTACCTTTATGGGACATACGGCCTCTGTTATGTCATTAGATTTCCACCCAAATAAAGACGACCTCATCTGTTCTTGTGATGGGGATGGTCAGATACGCTACTGGAGTATTAACAAAGGCAGCTGCTCGTGCGTGTCTAAGGGTGGTACGGCACAAATGAGATTTCAACCCCGTCTTGGAAGATTTCTTGCTGCAGCTGCAGAGAATGTTGTATCTATACTGGATGTTGAGACTCAGGCTTGTCGGCATTCTTTACAGGGGCATACTAAGCCTATCCATTCTGTGTGTTGGGATCCTTCTGGCGAATTCCTTGCATCTGTCAGCGAGGACTCTGTAAGAGTTTGGACACTTGGAGCGGGAGGCGAAGGGGAATGTGTTCATGAGTTAAGCTGCAACGGAAATAAATTTCATTCATGCGTTTTCCATCCTACATATACTTCACTGCTGGTCATTGGCTGTTATCAGTCACTGGAGTTATGGAACATGACAGAGAACAAGACAATGACTCTATCGGCACATGAAGGACTTATTGCTGCCTTGTCTGTGTCAACTGTTACGGGTTTGGTTGCTTCGGCTAGTCACGATAAGTTTGTCAAGCTCTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

914

Amino Acids

100.26

Weight (kDa)

6.36

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1105, 2093
Acc36I ACCTGC 1 cut(s) 878
Acc65I GGTACC 1 cut(s) 1198
AccB1I GGYRCC 1 cut(s) 1198
AccB7I CCANNNNNTGG 1 cut(s) 706
AccBSI CCGCTC 2 cut(s) 964, 2489
AccI GTMKAC 1 cut(s) 836
AciI CCGC 7 cut(s) 67, 224, 311, 491, 500, 962, 2489
AcoI YGGCCR 2 cut(s) 751, 959
AcsI RAATTY 7 cut(s) 912, 1180, 1369, 1444, 1937, 2438, 2537
AcuI CTGAAG 6 cut(s) 626, 744, 983, 1031, 1274, 1500
AfaI GTAC 9 cut(s) 617, 781, 1200, 1681, 1687, 1982, 2008, 2137, 2281
AfiI CCNNNNNNNGG 5 cut(s) 706, 968, 1208, 1637, 2309
AjiI CACGTC 2 cut(s) 1195, 2066
AjnI CCWGG 6 cut(s) 583, 916, 1159, 1483, 1600, 2119
Alw26I GTCTC 3 cut(s) 9, 1776, 2357
AlwNI CAGNNNCTG 3 cut(s) 893, 1523, 2602
Ama87I CYCGRG 1 cut(s) 1564
AoxI GGCC 9 cut(s) 697, 751, 959, 1171, 1231, 1520, 1556, 1954, 2154
ApoI RAATTY 7 cut(s) 912, 1180, 1369, 1444, 1937, 2438, 2537
AseI ATTAAT 1 cut(s) 905
Asp700I GAANNNNTTC 2 cut(s) 1013, 2508
Asp718I GGTACC 1 cut(s) 1198
AspLEI GCGC 3 cut(s) 142, 1673, 1898
AspS9I GGNCC 7 cut(s) 697, 890, 1157, 1232, 1520, 1556, 1954
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 5 cut(s) 698, 1095, 1202, 1206, 1689
AvaI CYCGRG 1 cut(s) 1564
AvaII GGWCC 2 cut(s) 890, 1157
AxyI CCTNAGG 1 cut(s) 894
BaeGI GKGCMC 1 cut(s) 523
BamHI GGATCC 1 cut(s) 2425
BanI GGYRCC 1 cut(s) 1198
BauI CACGAG 2 cut(s) 1245, 2260
BbsI GAAGAC 2 cut(s) 1138, 2070
BceAI ACGGC 2 cut(s) 2169, 2298
BcgI CGANNNNNNTGC 2 cut(s) 2426, 2460
BciT130I CCWGG 6 cut(s) 585, 918, 1161, 1485, 1602, 2121
BciVI GTATCC 1 cut(s) 124
BclI TGATCA 1 cut(s) 1462
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 3 cut(s) 9, 1776, 2357
BfaI CTAG 5 cut(s) 59, 195, 1947, 2012, 2709
BfmI CTRYAG 4 cut(s) 741, 885, 2325, 2331
BfoI RGCGCY 1 cut(s) 1674
BfuAI ACCTGC 1 cut(s) 878
BfuI GTATCC 1 cut(s) 124
BglI GCCNNNNNGGC 1 cut(s) 763
BglII AGATCT 1 cut(s) 1726
BlpI GCTNAGC 2 cut(s) 375, 1086
Bme1390I CCNGG 7 cut(s) 144, 585, 918, 1161, 1485, 1602, 2121
Bme18I GGWCC 2 cut(s) 890, 1157
BmeT110I CYCGRG 1 cut(s) 1564
BmgBI CACGTC 2 cut(s) 1195, 2066
BmgT120I GGNCC 7 cut(s) 697, 890, 1157, 1232, 1520, 1556, 1954
BmiI GGNNCC 4 cut(s) 1200, 1234, 1955, 2427
BmrFI CCNGG 7 cut(s) 144, 585, 918, 1161, 1485, 1602, 2121
BmrI ACTGGG 1 cut(s) 25
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 2 cut(s) 1138, 2070
BpmI CTGGAG 3 cut(s) 1623, 2257, 2624
Bpu1102I GCTNAGC 2 cut(s) 375, 1086
BpuMI CCSGG 1 cut(s) 144
Bsa29I ATCGAT 1 cut(s) 1753
BsaBI GATNNNNATC 4 cut(s) 714, 1725, 1749, 1815
BsaI GGTCTC 1 cut(s) 1776
BsaJI CCNNGG 2 cut(s) 1160, 1484
BsaWI WCCGGW 1 cut(s) 841
BsaXI ACNNNNNCTCC 2 cut(s) 1582, 1612
Bsc4I CCNNNNNNNGG 5 cut(s) 706, 968, 1208, 1637, 2309
Bse118I RCCGGY 1 cut(s) 749
Bse1I ACTGG 7 cut(s) 20, 866, 1505, 1687, 2240, 2358, 2607
Bse21I CCTNAGG 1 cut(s) 894
Bse3DI GCAATG 1 cut(s) 189
Bse8I GATNNNNATC 4 cut(s) 714, 1725, 1749, 1815
BseBI CCWGG 6 cut(s) 585, 918, 1161, 1485, 1602, 2121
BseCI ATCGAT 1 cut(s) 1753
BseDI CCNNGG 2 cut(s) 1160, 1484
BseJI GATNNNNATC 4 cut(s) 714, 1725, 1749, 1815
BseLI CCNNNNNNNGG 5 cut(s) 706, 968, 1208, 1637, 2309
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 5 cut(s) 132, 389, 885, 1100, 2381
BseNI ACTGG 7 cut(s) 20, 866, 1505, 1687, 2240, 2358, 2607
BseRI GAGGAG 1 cut(s) 1636
BseSI GKGCMC 1 cut(s) 523
BseYI CCCAGC 3 cut(s) 303, 1029, 1553
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 9 cut(s) 699, 753, 961, 1173, 1233, 1522, 1558, 1956, 2156
BshNI GGYRCC 1 cut(s) 1198
BshVI ATCGAT 1 cut(s) 1753
BsiHKCI CYCGRG 1 cut(s) 1564
BsiSI CCGG 3 cut(s) 143, 750, 842
BslFI GGGAC 1 cut(s) 2160
BslI CCNNNNNNNGG 5 cut(s) 706, 968, 1208, 1637, 2309
BsmAI GTCTC 3 cut(s) 9, 1776, 2357
BsmFI GGGAC 1 cut(s) 2160
BsmI GAATGC 3 cut(s) 601, 1146, 2380
BsnI GGCC 9 cut(s) 699, 753, 961, 1173, 1233, 1522, 1558, 1956, 2156
Bso31I GGTCTC 1 cut(s) 1776
BsoBI CYCGRG 1 cut(s) 1564
Bsp1286I GDGCHC 1 cut(s) 523
Bsp1720I GCTNAGC 2 cut(s) 375, 1086
BspACI CCGC 7 cut(s) 67, 224, 311, 491, 500, 962, 2489
BspANI GGCC 9 cut(s) 699, 753, 961, 1173, 1233, 1522, 1558, 1956, 2156
BspCNI CTCAG 5 cut(s) 131, 388, 886, 1099, 2380
BspDI ATCGAT 1 cut(s) 1753
BspHI TCATGA 2 cut(s) 357, 2512
BspLI GGNNCC 4 cut(s) 1200, 1234, 1955, 2427
BspMAI CTGCAG 4 cut(s) 745, 889, 2329, 2335
BspMI ACCTGC 1 cut(s) 878
BspT107I GGYRCC 1 cut(s) 1198
BspTNI GGTCTC 1 cut(s) 1776
BsrBI CCGCTC 2 cut(s) 964, 2489
BsrDI GCAATG 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 749
BsrI ACTGG 7 cut(s) 20, 866, 1505, 1687, 2240, 2358, 2607
BssAI RCCGGY 1 cut(s) 749
BssECI CCNNGG 2 cut(s) 1160, 1484
BssSI CACGAG 2 cut(s) 1245, 2260
Bst2BI CACGAG 2 cut(s) 1245, 2260
Bst2UI CCWGG 6 cut(s) 585, 918, 1161, 1485, 1602, 2121
Bst4CI ACNGT 3 cut(s) 1107, 2095, 2686
Bst6I CTCTTC 3 cut(s) 505, 645, 1224
BstAPI GCANNNNNTGC 3 cut(s) 340, 772, 1078
BstDEI CTNAG 8 cut(s) 118, 375, 894, 1086, 1136, 2271, 2367, 2400
BstH2I RGCGCY 1 cut(s) 1674
BstHHI GCGC 3 cut(s) 142, 1673, 1898
BstMAI GTCTC 3 cut(s) 9, 1776, 2357
BstNI CCWGG 6 cut(s) 585, 918, 1161, 1485, 1602, 2121
BstNSI RCATGY 3 cut(s) 374, 1441, 2062
BstSCI CCNGG 7 cut(s) 142, 583, 916, 1159, 1483, 1600, 2119
BstSFI CTRYAG 4 cut(s) 741, 885, 2325, 2331
BstSLI GKGCMC 1 cut(s) 523
BstV2I GAAGAC 2 cut(s) 1138, 2070
BstX2I RGATCY 4 cut(s) 121, 1252, 1726, 2425
BstYI RGATCY 4 cut(s) 121, 1252, 1726, 2425
Bsu15I ATCGAT 1 cut(s) 1753
Bsu36I CCTNAGG 1 cut(s) 894
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 9 cut(s) 699, 753, 961, 1173, 1233, 1522, 1558, 1956, 2156
BsuTUI ATCGAT 1 cut(s) 1753
BtrI CACGTC 2 cut(s) 1195, 2066
BtsI GCAGTG 1 cut(s) 2573
BtsIMutI CAGTG 3 cut(s) 1512, 2573, 2600
BveI ACCTGC 1 cut(s) 878
CaiI CAGNNNCTG 3 cut(s) 893, 1523, 2602
CciI TCATGA 2 cut(s) 357, 2512
CfoI GCGC 3 cut(s) 142, 1673, 1898
Cfr10I RCCGGY 1 cut(s) 749
Cfr13I GGNCC 7 cut(s) 697, 890, 1157, 1232, 1520, 1556, 1954
ClaI ATCGAT 1 cut(s) 1753
Csp6I GTAC 9 cut(s) 616, 780, 1199, 1680, 1686, 1981, 2007, 2136, 2280
CviQI GTAC 9 cut(s) 616, 780, 1199, 1680, 1686, 1981, 2007, 2136, 2280
DdeI CTNAG 8 cut(s) 118, 375, 894, 1086, 1136, 2271, 2367, 2400
DraI TTTAAA 2 cut(s) 75, 951
DrdI GACNNNNNNGTC 2 cut(s) 1105, 2093
DseDI GACNNNNNNGTC 2 cut(s) 1105, 2093
EaeI YGGCCR 2 cut(s) 751, 959
Eam1104I CTCTTC 3 cut(s) 505, 645, 1224
EarI CTCTTC 3 cut(s) 505, 645, 1224
Eco31I GGTCTC 1 cut(s) 1776
Eco47I GGWCC 2 cut(s) 890, 1157
Eco57I CTGAAG 6 cut(s) 626, 744, 983, 1031, 1274, 1500
Eco81I CCTNAGG 1 cut(s) 894
Eco88I CYCGRG 1 cut(s) 1564
EcoO109I RGGNCCY 2 cut(s) 890, 1520
EcoRI GAATTC 3 cut(s) 912, 1444, 2438
EcoRII CCWGG 6 cut(s) 583, 916, 1159, 1483, 1600, 2119
EcoT22I ATGCAT 1 cut(s) 667
FaqI GGGAC 1 cut(s) 2160
FauI CCCGC 2 cut(s) 60, 2482
FbaI TGATCA 1 cut(s) 1462
FblI GTMKAC 1 cut(s) 836
FspBI CTAG 5 cut(s) 59, 195, 1947, 2012, 2709
GlaI GCGC 3 cut(s) 141, 1672, 1897
GsaI CCCAGC 3 cut(s) 307, 1033, 1557
GsuI CTGGAG 3 cut(s) 1623, 2257, 2624
HaeII RGCGCY 1 cut(s) 1674
HaeIII GGCC 9 cut(s) 699, 753, 961, 1173, 1233, 1522, 1558, 1956, 2156
HapII CCGG 3 cut(s) 143, 750, 842
HhaI GCGC 3 cut(s) 142, 1673, 1898
Hin6I GCGC 3 cut(s) 140, 1671, 1896
HinP1I GCGC 3 cut(s) 140, 1671, 1896
HincII GTYRAC 2 cut(s) 1056, 2682
HindII GTYRAC 2 cut(s) 1056, 2682
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 8 cut(s) 796, 874, 1150, 1591, 1790, 2365, 2462, 2638
HpaII CCGG 3 cut(s) 143, 750, 842
HphI GGTGA 5 cut(s) 698, 1095, 1202, 1206, 1689
Hpy166II GTNNAC 6 cut(s) 837, 1056, 1863, 1879, 1983, 2682
Hpy188I TCNGA 8 cut(s) 121, 217, 645, 1050, 1659, 1930, 2055, 2226
Hpy188III TCNNGA 9 cut(s) 358, 893, 990, 1256, 1730, 1775, 2513, 2714, 2734
Hpy8I GTNNAC 6 cut(s) 837, 1056, 1863, 1879, 1983, 2682
HpyAV CCTTC 8 cut(s) 98, 768, 1159, 1569, 1587, 2439, 2492, 2648
HpyCH4III ACNGT 3 cut(s) 1107, 2095, 2686
HpyCH4IV ACGT 3 cut(s) 1194, 2065, 2075
HpyF3I CTNAG 8 cut(s) 118, 375, 894, 1086, 1136, 2271, 2367, 2400
HpySE526I ACGT 3 cut(s) 1194, 2065, 2075
HspAI GCGC 3 cut(s) 140, 1671, 1896
KpnI GGTACC 1 cut(s) 1202
Ksp22I TGATCA 1 cut(s) 1462
LmnI GCTCC 5 cut(s) 256, 976, 1030, 1649, 2486
MaeI CTAG 5 cut(s) 59, 195, 1947, 2012, 2709
MaeII ACGT 3 cut(s) 1194, 2065, 2075
MaeIII GTNAC 7 cut(s) 1190, 1362, 1906, 1916, 2598, 2686, 2711
MbiI CCGCTC 2 cut(s) 964, 2489
MflI RGATCY 4 cut(s) 121, 1252, 1726, 2425
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 9 cut(s) 912, 940, 1180, 1369, 1444, 1733, 1937, 2438, 2537
MlyI GAGTC 6 cut(s) 790, 1585, 1799, 2359, 2456, 2632
MmeI TCCRAC 1 cut(s) 535
Mph1103I ATGCAT 1 cut(s) 667
MroXI GAANNNNTTC 2 cut(s) 1013, 2508
MslI CAYNNNNRTG 2 cut(s) 1424, 1824
MspA1I CMGCKG 5 cut(s) 740, 785, 1553, 2256, 2330
MspI CCGG 3 cut(s) 143, 750, 842
MspR9I CCNGG 7 cut(s) 144, 585, 918, 1161, 1485, 1602, 2121
Mva1269I GAATGC 3 cut(s) 601, 1146, 2380
MvaI CCWGG 6 cut(s) 585, 918, 1161, 1485, 1602, 2121
NciI CCSGG 1 cut(s) 144
NlaIV GGNNCC 4 cut(s) 1200, 1234, 1955, 2427
NmuCI GTSAC 5 cut(s) 1190, 1362, 1916, 2598, 2711
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 3 cut(s) 374, 1441, 2062
PaeI GCATGC 2 cut(s) 374, 2062
PagI TCATGA 2 cut(s) 357, 2512
PctI GAATGC 3 cut(s) 601, 1146, 2380
PdmI GAANNNNTTC 2 cut(s) 1013, 2508
PfeI GAWTC 2 cut(s) 874, 1150
PflMI CCANNNNNTGG 1 cut(s) 706
PfoI TCCNGGA 3 cut(s) 583, 916, 1600
PleI GAGTC 6 cut(s) 790, 1585, 1798, 2359, 2456, 2632
PpsI GAGTC 6 cut(s) 790, 1585, 1798, 2359, 2456, 2632
PpuMI RGGWCCY 1 cut(s) 890
PshBI ATTAAT 1 cut(s) 905
Psp5II RGGWCCY 1 cut(s) 890
Psp6I CCWGG 6 cut(s) 583, 916, 1159, 1483, 1600, 2119
PspFI CCCAGC 3 cut(s) 303, 1029, 1553
PspGI CCWGG 6 cut(s) 583, 916, 1159, 1483, 1600, 2119
PspN4I GGNNCC 4 cut(s) 1200, 1234, 1955, 2427
PspPI GGNCC 7 cut(s) 697, 890, 1157, 1232, 1520, 1556, 1954
PspPPI RGGWCCY 1 cut(s) 890
PstI CTGCAG 4 cut(s) 745, 889, 2329, 2335
PstNI CAGNNNCTG 3 cut(s) 893, 1523, 2602
PsuI RGATCY 4 cut(s) 121, 1252, 1726, 2425
PvuII CAGCTG 5 cut(s) 740, 785, 1553, 2256, 2330
RsaI GTAC 9 cut(s) 617, 781, 1200, 1681, 1687, 1982, 2008, 2137, 2281
RsaNI GTAC 9 cut(s) 616, 780, 1199, 1680, 1686, 1981, 2007, 2136, 2280
RseI CAYNNNNRTG 2 cut(s) 1424, 1824
Sau96I GGNCC 7 cut(s) 697, 890, 1157, 1232, 1520, 1556, 1954
SchI GAGTC 6 cut(s) 790, 1585, 1799, 2359, 2456, 2632
ScrFI CCNGG 7 cut(s) 144, 585, 918, 1161, 1485, 1602, 2121
SduI GDGCHC 1 cut(s) 523
SfcI CTRYAG 4 cut(s) 741, 885, 2325, 2331
SinI GGWCC 2 cut(s) 890, 1157
SmiMI CAYNNNNRTG 2 cut(s) 1424, 1824
SphI GCATGC 2 cut(s) 374, 2062
Sse9I AATT 9 cut(s) 912, 940, 1180, 1369, 1444, 1733, 1937, 2438, 2537
SsiI CCGC 7 cut(s) 67, 224, 311, 491, 500, 962, 2489
SspI AATATT 1 cut(s) 729
SspMI CTAG 5 cut(s) 59, 195, 1947, 2012, 2709
StyD4I CCNGG 7 cut(s) 142, 583, 916, 1159, 1483, 1600, 2119
TaaI ACNGT 3 cut(s) 1107, 2095, 2686
TaiI ACGT 3 cut(s) 1197, 2068, 2078
TaqI TCGA 7 cut(s) 814, 1442, 1453, 1589, 1753, 1788, 1837
TasI AATT 9 cut(s) 912, 940, 1180, 1369, 1444, 1733, 1937, 2438, 2537
TauI GCSGC 3 cut(s) 227, 502, 964
TfiI GAWTC 2 cut(s) 874, 1150
TscAI CASTG 3 cut(s) 1512, 2580, 2607
TseFI GTSAC 5 cut(s) 1190, 1362, 1916, 2598, 2711
Tsp45I GTSAC 5 cut(s) 1190, 1362, 1916, 2598, 2711
TspGWI ACGGA 2 cut(s) 2123, 2544
TspRI CASTG 3 cut(s) 1512, 2580, 2607
Van91I CCANNNNNTGG 1 cut(s) 706
VpaK11BI GGWCC 2 cut(s) 890, 1157
VspI ATTAAT 1 cut(s) 905
XapI RAATTY 7 cut(s) 912, 1180, 1369, 1444, 1937, 2438, 2537
XceI RCATGY 3 cut(s) 374, 1441, 2062
XmiI GTMKAC 1 cut(s) 836
XmnI GAANNNNTTC 2 cut(s) 1013, 2508
XspI CTAG 5 cut(s) 59, 195, 1947, 2012, 2709
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.