FvH4_2g29940

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000670
Physical Location & Seq
Forward (+)
23203760 .. 23211106
7347 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29940.t8

Sequence Viewer

Length: 2706 bp
ATGTCTCAGACTAACTGGGAAGCTGATAAAATGTTGGATGTCTACATCCATGATTATCTAGTGAAAAGAGACTTGAAGGCTTCTGCTCAAGCTTTCCAAGCTGAAGGGAAGGTGTCTTCTGATCCTGTTGCTATTGATGCACCGGGAGGTTTTCTATTCGAATGGTGGTCAGTTTTCTGGGATATATTTATTGCTAGGACCAATGAAAAGCATTCAGAGGTTGCTGCATCTTACATCGAGACACAGTTTATTAAAGCAAGGGAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAGCAACAATCCCAGCAGCCCCAACATTCACAACAACAACAGCAACAGCAACACATGCAAATGCAACAGATTATGATGCAAAGACATCAGCAGCAACAACAACAACAACAGCAACAGCAACAGCAGCAGCAACAACAACAGCCACAGCAACAACAGCAGCCACAGCAGCAACAACAGACACAACAGAGAAGAGATGGGGCCCATCTGTTAAATGGAAATACAAACGGGCTTGTTGGAAATGATCCTCTTATGCGACAAAATCCTGGAACAGCAAATGCTATGGCTACCAAGATGTACGAGGAAAGATTAAAACTTCCCCAGAGAGATTCTATGGACGATGCATCTCTTAAGAGATTTGGTGAGAATGTGGGCCAGCTTTTGGATCAAAATCATGCTTCATTATTAAAGTCAGCTGCAGCAGCTGGTCAGCCTTCAGGGCAAGTTTTGCATGGTTCAGCCGGTGGGATGACTCAACAAGTCCAAGCTCGAAATCAGCAACTGCCAGGATCTACGCCAGATATAAAGACAGAAATTAATCCTATATTAAATCCAAGAGCTCCTGAGGGATCATTGATCGGAATTCCAGGGTCTAATCAGGGTGGGAACAATCTAACTCTAAAAGGATGGCCACTCACAGGTCTGGATCAACTTCGTTCTGGACTTCTTCAGCAACAAAAACCTTTTATGCAAGCTCCCCAGCCTTTTCATCAGCTTCAGATGCTGACACCACAACACCAGCAACAACTTATGCTTGCCCAGCAAAATTTGACATCGCCATCTGCTAGTGATGATAGTAGAAGACTAAGAATGTTATTGAATAATCGAAGTATGGGGATTGGGAAGGATGGCCTTTCGAATTCTGTTGGCGATGTAGTGCCAAATGTAGGATCGCCTCTTCAAGCTGCTTCTATGATGGCTCGTGGAGATACTGATATACTGATGAAGTTAAAAATGGCTCAGCTACAGCAACAGCAGAATAGTAACCCACAACAACAGCTTCAGCAGCATGCTCTTTCTGCACAGCAGTTGCAAAGTTCAAATCATAATCCTCATCAGCAAGATAAAATGGGGGGTGGTGGCAGCATCACAATGGATGCTAGCATGTCTAACTCTTTTCGAGGAAATGATCAGGTTTCAAAAAACCAGCCTGGGAGAAAGAGAAAGCAGCCAGTGTCATCTTCAGGCCCTGCCAATAGCACGGGAACAGCAAACACAACTGGACCTTCCCCGAGTTCAGCCCCTTCAACTCCTTCAACCCACACTCCTGGTGATGTAATATCAATGCCTGCCTTACCCCATAGTGGTGGATCCTCTAAGCCTCTGATGATGTTTGGTGCTGATGGTACTGGTACGCTTACCTCACCCTCAAATCCACTGTGGGATGATAAAGATCTTGAATTGCAGGCTGATATGGATCGTTTTGTGGAGGACGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCTCATGATGATGGAGACCCTAGAGATGCTGTTGGTCGATGTATGGATGTCAGCAAAGGGTTCACATTTACGGAAGTAAACTCTGTTAGAGCAAGCCCAAGCAAAGTTACTAGTTGTCACTTCTCATCGGATGGAAAACTTCTTACTAGTGGTGGCCATGATAAAAAGGCTGTATTATGGTACACTGATACTTTGAAGCCAAAGTCTACACTTGAAGAGCATTCAGCTTTGATAACTGATGTACGGTTCAGTCCAAGCATGCCACGTCTTGCAACATCTTCTTTTGACAAAACTGTCAGAGTCTGGGATGCTGATAATCCTGGTTATTCACTTCGCACCTTCATGGGACATAATGCGTCAGTGATGTCAGTAGATTTCCACCCGAATAAGGACGACCTTATCTGTTCTTGTGATGGGGATGGTGAGATTCGCTACTGGAGTATTAACAATGGCAGCTGTGCAAGAGTGTTCAAGGGTGGGACGACTCAGGTGAGATTCCAACCTCGCCTTGGAAGATATCTTGCTGCAGCAGCAGAGAATGTTGTATCTATACTGGATGTGGAGACACAGGCTTGTCGGCATTCATTACAGGGACATACAAAGCCAATTAAGTCTGTGTGCTGGGATCCGTCTGGTGAGTTCCTTGCATCCGTGAGTGAGGACTCGGTCAGAGTTTGGACTTTCGGATCAGGAAATGAAGGGGAGTGTGTTCATGAATTGAGCTGTAATGGCAATAAATTTCATTCCTGTGTCTTCCATCCAACATATACTTCACTGCTGGTCATTGGTTGTTACCAGTCTTTGGAGCTATGGAACATGACAGAGGGCAAGACTATGACTCTATCAGCACACGAAGGTCTTATTGCTTCGTTGGCTGTGTCAACTGTAACAGGTTTGGTTGCTTCGGCTAGTCATGATAAGTGGGTTAAGCTTTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

902

Amino Acids

99.16

Weight (kDa)

6.34

Isoelectric Point (pI)

51.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 10 - 36 1.7e-06 LisH
Beta-prop_THOC3 PF25174 595 - 659 4.3e-07 THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 596 - 800 2.9e-13 MABP1/WDR62 second WD40 domain
WD40_CDC20-Fz PF24807 597 - 663 7.3e-07 CDC20/Fizzy WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 599 - 680 2e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 599 - 801 5.5e-18 WDR3 second beta-propeller domain
Beta-prop_EML_2 PF23414 605 - 726 1.1e-14 Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19 PF24814 605 - 800 3.7e-30 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 607 - 735 1.5e-26 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 607 - 704 6.5e-06 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 607 - 680 1.9e-09 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 607 - 722 2.5e-20 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 609 - 712 9.8e-08 G protein beta WD-40 repeat protein
EIF3I PF24805 610 - 679 2.8e-06 EIF3I
Beta-prop_TEP1_2nd PF25047 637 - 736 1.9e-07 TEP-1 second beta-propeller
WD40 PF00400 640 - 677 1.4e-08 WD domain, G-beta repeat
WD40_CDC20-Fz PF24807 644 - 731 2.6e-11 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 648 - 887 8.7e-38 THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 660 - 727 4.7e-06 WDR90/POC16, second beta-propeller
WD40 PF00400 683 - 721 5.5e-06 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 685 - 733 6e-07 WDHD1 first WD40 domain
Beta-prop_Aladin PF25460 692 - 794 6.4e-06 Aladin seven-bladed propeller
WDR55 PF24796 692 - 857 6.1e-07 WDR55
WD40_Gbeta PF25391 705 - 886 1.3e-09 G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st PF25173 711 - 846 1.4e-14 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 713 - 806 1.6e-06 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 714 - 886 8.2e-18 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 734 - 886 8.2e-25 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 735 - 820 5.7e-11 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 745 - 886 3e-09 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 746 - 880 4.9e-08 WDR36/Utp21 first beta-propeller
WD40 PF00400 766 - 800 9e-08 WD domain, G-beta repeat
Beta-prop_EIPR1 PF23609 769 - 857 7.4e-06 EIPR1 beta-propeller
Beta-prop_WDR3_1st PF25173 796 - 886 1e-05 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2057
AccB7I CCANNNNNTGG 2 cut(s) 679, 2566
AccI GTMKAC 2 cut(s) 42, 1970
AcoI YGGCCR 2 cut(s) 926, 1918
AcsI RAATTY 4 cut(s) 879, 1063, 1156, 2501
AcuI CTGAAG 6 cut(s) 123, 717, 950, 998, 1283, 1464
AfaI GTAC 5 cut(s) 596, 1645, 1651, 1946, 2007
AfiI CCNNNNNNNGG 7 cut(s) 679, 935, 1184, 1601, 2152, 2273, 2566
AflII CTTAAG 1 cut(s) 647
AhlI ACTAGT 2 cut(s) 1874, 1910
AjiI CACGTC 1 cut(s) 2030
AjnI CCWGG 6 cut(s) 562, 802, 883, 1447, 1564, 2083
AjuI GAANNNNNNNTTGG 2 cut(s) 2518, 2550
Alw21I GWGCWC 1 cut(s) 859
Alw26I GTCTC 5 cut(s) 9, 63, 233, 1773, 2321
AlwNI CAGNNNCTG 5 cut(s) 722, 799, 1021, 1487, 2067
Ama87I CYCGRG 1 cut(s) 1528
AoxI GGCC 6 cut(s) 498, 670, 926, 1147, 1483, 1918
ApaI GGGCCC 1 cut(s) 502
ApoI RAATTY 4 cut(s) 879, 1063, 1156, 2501
AseI ATTAAT 1 cut(s) 834
AspS9I GGNCC 6 cut(s) 198, 498, 499, 670, 1484, 1520
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 6 cut(s) 671, 1580, 1653, 2198, 2266, 2411
AsuII TTCGAA 2 cut(s) 159, 1154
AsuNHI GCTAGC 1 cut(s) 1397
AvaI CYCGRG 1 cut(s) 1528
AvaII GGWCC 2 cut(s) 198, 1520
AxyI CCTNAGG 1 cut(s) 861
BaeGI GKGCMC 1 cut(s) 502
BalI TGGCCA 2 cut(s) 928, 1920
BamHI GGATCC 2 cut(s) 1607, 2389
BanII GRGCYC 2 cut(s) 502, 859
BauI CACGAG 1 cut(s) 1218
BbsI GAAGAC 3 cut(s) 108, 1105, 2509
Bbv12I GWGCWC 1 cut(s) 859
BciT130I CCWGG 6 cut(s) 564, 804, 885, 1449, 1566, 2085
BclI TGATCA 1 cut(s) 1426
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 5 cut(s) 9, 63, 233, 1773, 2321
BcuI ACTAGT 2 cut(s) 1874, 1910
BfaI CTAG 8 cut(s) 59, 195, 1083, 1398, 1785, 1875, 1911, 2673
BfmI CTRYAG 3 cut(s) 714, 1262, 2289
BfrI CTTAAG 1 cut(s) 647
BglI GCCNNNNNGGC 1 cut(s) 736
BglII AGATCT 1 cut(s) 1690
BlpI GCTNAGC 1 cut(s) 1257
Bme1390I CCNGG 7 cut(s) 144, 564, 804, 885, 1449, 1566, 2085
Bme18I GGWCC 2 cut(s) 198, 1520
BmeT110I CYCGRG 1 cut(s) 1528
BmgBI CACGTC 1 cut(s) 2030
BmgT120I GGNCC 6 cut(s) 198, 498, 499, 670, 1484, 1520
BmiI GGNNCC 4 cut(s) 499, 500, 1609, 2391
BmrFI CCNGG 7 cut(s) 144, 564, 804, 885, 1449, 1566, 2085
BmrI ACTGGG 1 cut(s) 25
BmtI GCTAGC 1 cut(s) 1401
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 3 cut(s) 108, 1105, 2509
BpmI CTGGAG 1 cut(s) 2221
Bpu1102I GCTNAGC 1 cut(s) 1257
Bpu14I TTCGAA 2 cut(s) 159, 1154
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 144
BsaBI GATNNNNATC 3 cut(s) 687, 1689, 1713
BsaI GGTCTC 1 cut(s) 1773
BsaJI CCNNGG 3 cut(s) 884, 1448, 2272
BsaXI ACNNNNNCTCC 2 cut(s) 1546, 1576
Bsc4I CCNNNNNNNGG 7 cut(s) 679, 935, 1184, 1601, 2152, 2273, 2566
Bse118I RCCGGY 1 cut(s) 758
Bse1I ACTGG 7 cut(s) 20, 1469, 1522, 1651, 2204, 2322, 2560
Bse21I CCTNAGG 1 cut(s) 861
Bse8I GATNNNNATC 3 cut(s) 687, 1689, 1713
BseBI CCWGG 6 cut(s) 564, 804, 885, 1449, 1566, 2085
BseDI CCNNGG 3 cut(s) 884, 1448, 2272
BseJI GATNNNNATC 3 cut(s) 687, 1689, 1713
BseLI CCNNNNNNNGG 7 cut(s) 679, 935, 1184, 1601, 2152, 2273, 2566
BseMII CTCAG 4 cut(s) 20, 852, 1271, 2264
BseNI ACTGG 7 cut(s) 20, 1469, 1522, 1651, 2204, 2322, 2560
BseSI GKGCMC 1 cut(s) 502
BseYI CCCAGC 4 cut(s) 312, 996, 1056, 2385
BsgI GTGCAG 1 cut(s) 1302
BshFI GGCC 6 cut(s) 500, 672, 928, 1149, 1485, 1920
BsiHKAI GWGCWC 1 cut(s) 859
BsiHKCI CYCGRG 1 cut(s) 1528
BsiSI CCGG 2 cut(s) 143, 759
BslFI GGGAC 3 cut(s) 2124, 2257, 2370
BslI CCNNNNNNNGG 7 cut(s) 679, 935, 1184, 1601, 2152, 2273, 2566
BsmAI GTCTC 5 cut(s) 9, 63, 233, 1773, 2321
BsmFI GGGAC 3 cut(s) 2124, 2257, 2370
BsmI GAATGC 3 cut(s) 211, 1984, 2344
BsnI GGCC 6 cut(s) 500, 672, 928, 1149, 1485, 1920
Bso31I GGTCTC 1 cut(s) 1773
BsoBI CYCGRG 1 cut(s) 1528
Bsp119I TTCGAA 2 cut(s) 159, 1154
Bsp120I GGGCCC 1 cut(s) 498
Bsp1286I GDGCHC 2 cut(s) 502, 859
Bsp1720I GCTNAGC 1 cut(s) 1257
BspANI GGCC 6 cut(s) 500, 672, 928, 1149, 1485, 1920
BspCNI CTCAG 4 cut(s) 19, 853, 1270, 2263
BspHI TCATGA 3 cut(s) 1768, 2476, 2677
BspLI GGNNCC 4 cut(s) 499, 500, 1609, 2391
BspMAI CTGCAG 2 cut(s) 718, 2293
BspOI GCTAGC 1 cut(s) 1401
BspQI GCTCTTC 1 cut(s) 1974
BspT104I TTCGAA 2 cut(s) 159, 1154
BspTI CTTAAG 1 cut(s) 647
BspTNI GGTCTC 1 cut(s) 1773
BsrFI RCCGGY 1 cut(s) 758
BsrI ACTGG 7 cut(s) 20, 1469, 1522, 1651, 2204, 2322, 2560
BssAI RCCGGY 1 cut(s) 758
BssECI CCNNGG 3 cut(s) 884, 1448, 2272
BssSI CACGAG 1 cut(s) 1218
BssT1I CCWWGG 1 cut(s) 2272
Bst2BI CACGAG 1 cut(s) 1218
Bst2UI CCWGG 6 cut(s) 564, 804, 885, 1449, 1566, 2085
Bst4CI ACNGT 5 cut(s) 246, 1677, 2010, 2059, 2650
Bst6I CTCTTC 3 cut(s) 484, 1200, 1974
BstAFI CTTAAG 1 cut(s) 647
BstAPI GCANNNNNTGC 2 cut(s) 355, 745
BstBI TTCGAA 2 cut(s) 159, 1154
BstC8I GCNNGC 9 cut(s) 674, 990, 1053, 1308, 1399, 1587, 1704, 1858, 2024
BstDEI CTNAG 6 cut(s) 6, 861, 1103, 1257, 1614, 2250
BstMAI GTCTC 5 cut(s) 9, 63, 233, 1773, 2321
BstNI CCWGG 6 cut(s) 564, 804, 885, 1449, 1566, 2085
BstNSI RCATGY 4 cut(s) 358, 1310, 1405, 2026
BstSCI CCNGG 7 cut(s) 142, 562, 802, 883, 1447, 1564, 2083
BstSFI CTRYAG 3 cut(s) 714, 1262, 2289
BstSLI GKGCMC 1 cut(s) 502
BstV2I GAAGAC 3 cut(s) 108, 1105, 2509
BstX2I RGATCY 5 cut(s) 806, 1607, 1690, 1733, 2389
BstXI CCANNNNNNTGG 2 cut(s) 1565, 1604
BstYI RGATCY 5 cut(s) 806, 1607, 1690, 1733, 2389
Bsu36I CCTNAGG 1 cut(s) 861
BsuRI GGCC 6 cut(s) 500, 672, 928, 1149, 1485, 1920
BtgZI GCGATG 2 cut(s) 1056, 1182
BtrI CACGTC 1 cut(s) 2030
BtsI GCAGTG 1 cut(s) 2537
BtsIMutI CAGTG 5 cut(s) 1476, 1673, 1947, 2130, 2537
Cac8I GCNNGC 9 cut(s) 674, 990, 1053, 1308, 1399, 1587, 1704, 1858, 2024
CaiI CAGNNNCTG 5 cut(s) 722, 799, 1021, 1487, 2067
CciI TCATGA 3 cut(s) 1768, 2476, 2677
Cfr10I RCCGGY 1 cut(s) 758
Cfr13I GGNCC 6 cut(s) 198, 498, 499, 670, 1484, 1520
CseI GACGC 1 cut(s) 2109
Csp6I GTAC 5 cut(s) 595, 1644, 1650, 1945, 2006
CviQI GTAC 5 cut(s) 595, 1644, 1650, 1945, 2006
DdeI CTNAG 6 cut(s) 6, 861, 1103, 1257, 1614, 2250
DrdI GACNNNNNNGTC 1 cut(s) 2057
DseDI GACNNNNNNGTC 1 cut(s) 2057
EaeI YGGCCR 2 cut(s) 926, 1918
Eam1104I CTCTTC 3 cut(s) 484, 1200, 1974
EarI CTCTTC 3 cut(s) 484, 1200, 1974
Ecl136II GAGCTC 1 cut(s) 857
Eco130I CCWWGG 1 cut(s) 2272
Eco24I GRGCYC 2 cut(s) 502, 859
Eco31I GGTCTC 1 cut(s) 1773
Eco32I GATATC 1 cut(s) 2282
Eco47I GGWCC 2 cut(s) 198, 1520
Eco53kI GAGCTC 1 cut(s) 857
Eco57I CTGAAG 6 cut(s) 123, 717, 950, 998, 1283, 1464
Eco81I CCTNAGG 1 cut(s) 861
Eco88I CYCGRG 1 cut(s) 1528
EcoICRI GAGCTC 1 cut(s) 857
EcoO109I RGGNCCY 2 cut(s) 498, 1484
EcoRI GAATTC 2 cut(s) 879, 1156
EcoRII CCWGG 6 cut(s) 562, 802, 883, 1447, 1564, 2083
EcoRV GATATC 1 cut(s) 2282
EcoT14I CCWWGG 1 cut(s) 2272
EcoT22I ATGCAT 1 cut(s) 643
EcoT38I GRGCYC 2 cut(s) 502, 859
ErhI CCWWGG 1 cut(s) 2272
FaqI GGGAC 3 cut(s) 2124, 2257, 2370
FbaI TGATCA 1 cut(s) 1426
FblI GTMKAC 2 cut(s) 42, 1970
FriOI GRGCYC 2 cut(s) 502, 859
FspBI CTAG 8 cut(s) 59, 195, 1083, 1398, 1785, 1875, 1911, 2673
GsaI CCCAGC 4 cut(s) 316, 1000, 1060, 2389
GsuI CTGGAG 1 cut(s) 2221
HaeIII GGCC 6 cut(s) 500, 672, 928, 1149, 1485, 1920
HapII CCGG 2 cut(s) 143, 759
HgaI GACGC 1 cut(s) 2109
HincII GTYRAC 1 cut(s) 2646
HindII GTYRAC 1 cut(s) 2646
HindIII AAGCTT 2 cut(s) 90, 2693
HinfI GANTC 9 cut(s) 626, 769, 1754, 2064, 2191, 2248, 2259, 2426, 2602
HpaII CCGG 2 cut(s) 143, 759
HphI GGTGA 6 cut(s) 671, 1580, 1653, 2198, 2266, 2411
Hpy166II GTNNAC 6 cut(s) 43, 1827, 1843, 1947, 1971, 2646
Hpy8I GTNNAC 6 cut(s) 43, 1827, 1843, 1947, 1971, 2646
HpyCH4III ACNGT 5 cut(s) 246, 1677, 2010, 2059, 2650
HpyCH4IV ACGT 1 cut(s) 2029
HpyF3I CTNAG 6 cut(s) 6, 861, 1103, 1257, 1614, 2250
HpySE526I ACGT 1 cut(s) 2029
Ksp22I TGATCA 1 cut(s) 1426
LguI GCTCTTC 1 cut(s) 1974
LmnI GCTCC 4 cut(s) 262, 862, 997, 2569
MaeI CTAG 8 cut(s) 59, 195, 1083, 1398, 1785, 1875, 1911, 2673
MaeII ACGT 1 cut(s) 2029
MaeIII GTNAC 5 cut(s) 1280, 1870, 1880, 2555, 2650
MflI RGATCY 5 cut(s) 806, 1607, 1690, 1733, 2389
MhlI GDGCHC 2 cut(s) 502, 859
MlsI TGGCCA 2 cut(s) 928, 1920
MluCI AATT 8 cut(s) 831, 879, 1063, 1156, 1697, 2370, 2480, 2501
MluNI TGGCCA 2 cut(s) 928, 1920
MlyI GAGTC 6 cut(s) 763, 1763, 2073, 2242, 2420, 2596
MmeI TCCRAC 4 cut(s) 15, 514, 2287, 2549
Mox20I TGGCCA 2 cut(s) 928, 1920
Mph1103I ATGCAT 1 cut(s) 643
MscI TGGCCA 2 cut(s) 928, 1920
MslI CAYNNNNRTG 6 cut(s) 359, 1388, 1602, 1773, 2105, 2511
Msp20I TGGCCA 2 cut(s) 928, 1920
MspA1I CMGCKG 3 cut(s) 713, 722, 2220
MspCI CTTAAG 1 cut(s) 647
MspI CCGG 2 cut(s) 143, 759
MspR9I CCNGG 7 cut(s) 144, 564, 804, 885, 1449, 1566, 2085
Mva1269I GAATGC 3 cut(s) 211, 1984, 2344
MvaI CCWGG 6 cut(s) 564, 804, 885, 1449, 1566, 2085
NciI CCSGG 1 cut(s) 144
NheI GCTAGC 1 cut(s) 1397
NlaIV GGNNCC 4 cut(s) 499, 500, 1609, 2391
NmuCI GTSAC 1 cut(s) 1880
NsiI ATGCAT 1 cut(s) 643
NspI RCATGY 4 cut(s) 358, 1310, 1405, 2026
NspV TTCGAA 2 cut(s) 159, 1154
PaeI GCATGC 2 cut(s) 1310, 2026
PagI TCATGA 3 cut(s) 1768, 2476, 2677
PciSI GCTCTTC 1 cut(s) 1974
PctI GAATGC 3 cut(s) 211, 1984, 2344
PfeI GAWTC 3 cut(s) 626, 2191, 2259
PflFI GACNNNGTC 1 cut(s) 2429
PflMI CCANNNNNTGG 2 cut(s) 679, 2566
PfoI TCCNGGA 1 cut(s) 562
PleI GAGTC 6 cut(s) 763, 1762, 2072, 2242, 2420, 2596
PpsI GAGTC 6 cut(s) 763, 1762, 2072, 2242, 2420, 2596
PshBI ATTAAT 1 cut(s) 834
Psp124BI GAGCTC 1 cut(s) 859
Psp6I CCWGG 6 cut(s) 562, 802, 883, 1447, 1564, 2083
PspFI CCCAGC 4 cut(s) 312, 996, 1056, 2385
PspGI CCWGG 6 cut(s) 562, 802, 883, 1447, 1564, 2083
PspN4I GGNNCC 4 cut(s) 499, 500, 1609, 2391
PspOMI GGGCCC 1 cut(s) 498
PspPI GGNCC 6 cut(s) 198, 498, 499, 670, 1484, 1520
PstI CTGCAG 2 cut(s) 718, 2293
PstNI CAGNNNCTG 5 cut(s) 722, 799, 1021, 1487, 2067
PsuI RGATCY 5 cut(s) 806, 1607, 1690, 1733, 2389
PsyI GACNNNGTC 1 cut(s) 2429
PvuII CAGCTG 3 cut(s) 713, 722, 2220
RsaI GTAC 5 cut(s) 596, 1645, 1651, 1946, 2007
RsaNI GTAC 5 cut(s) 595, 1644, 1650, 1945, 2006
RseI CAYNNNNRTG 6 cut(s) 359, 1388, 1602, 1773, 2105, 2511
SacI GAGCTC 1 cut(s) 859
SapI GCTCTTC 1 cut(s) 1974
Sau96I GGNCC 6 cut(s) 198, 498, 499, 670, 1484, 1520
SchI GAGTC 6 cut(s) 763, 1763, 2073, 2242, 2420, 2596
ScrFI CCNGG 7 cut(s) 144, 564, 804, 885, 1449, 1566, 2085
SduI GDGCHC 2 cut(s) 502, 859
SfcI CTRYAG 3 cut(s) 714, 1262, 2289
SfuI TTCGAA 2 cut(s) 159, 1154
SinI GGWCC 2 cut(s) 198, 1520
SmiMI CAYNNNNRTG 6 cut(s) 359, 1388, 1602, 1773, 2105, 2511
SmlI CTYRAG 2 cut(s) 87, 647
SmoI CTYRAG 2 cut(s) 87, 647
SpeI ACTAGT 2 cut(s) 1874, 1910
SphI GCATGC 2 cut(s) 1310, 2026
Sse9I AATT 8 cut(s) 831, 879, 1063, 1156, 1697, 2370, 2480, 2501
SspMI CTAG 8 cut(s) 59, 195, 1083, 1398, 1785, 1875, 1911, 2673
SstI GAGCTC 1 cut(s) 859
StyD4I CCNGG 7 cut(s) 142, 562, 802, 883, 1447, 1564, 2083
StyI CCWWGG 1 cut(s) 2272
TaaI ACNGT 5 cut(s) 246, 1677, 2010, 2059, 2650
TaiI ACGT 1 cut(s) 2032
TaqI TCGA 7 cut(s) 159, 237, 787, 1123, 1154, 1417, 1801
TaqII GACCGA 1 cut(s) 2419
TasI AATT 8 cut(s) 831, 879, 1063, 1156, 1697, 2370, 2480, 2501
TfiI GAWTC 3 cut(s) 626, 2191, 2259
TscAI CASTG 5 cut(s) 1476, 1680, 1954, 2130, 2544
TseFI GTSAC 1 cut(s) 1880
Tsp45I GTSAC 1 cut(s) 1880
TspGWI ACGGA 4 cut(s) 1746, 1850, 2382, 2404
TspRI CASTG 5 cut(s) 1476, 1680, 1954, 2130, 2544
Tth111I GACNNNGTC 1 cut(s) 2429
Van91I CCANNNNNTGG 2 cut(s) 679, 2566
Vha464I CTTAAG 1 cut(s) 647
VpaK11BI GGWCC 2 cut(s) 198, 1520
VspI ATTAAT 1 cut(s) 834
XapI RAATTY 4 cut(s) 879, 1063, 1156, 2501
XceI RCATGY 4 cut(s) 358, 1310, 1405, 2026
XcmI CCANNNNNNNNNTGG 2 cut(s) 509, 2270
XmiI GTMKAC 2 cut(s) 42, 1970
XspI CTAG 8 cut(s) 59, 195, 1083, 1398, 1785, 1875, 1911, 2673
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.