Rh6DG520500

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000670
Physical Location & Seq
Reverse (-)
67112084 .. 67133899
21816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG520500.1

Sequence Viewer

Length: 2376 bp
ATGTCTCAGACTAACTGGGAAGCTGATAAAATGTTAGATGTCTATATCCATGATTATCTAGTGAAAAGAGACTTAAAGGCTTCTGCTCAAGCTTTCCAAGCTGAAGGGAAGGTGTCGTCTGATCCCGTTGCTATTGATGCACCGGGAGGTTTTCTATTTGAATGGTGGTCAGTTTTCTGGGATATATTTATTGCTAGGACCAATGAGAAGCATTCAGAGGTTGCTGCATCTTACATCGAGACACAGTTCATTAAAGCAAGGGAGCAGCACCAGCAGCAACAACAACAACAACAACAACAGCAACAATCCCAGCAACCCCAACACTCACAACAACAGCAGCAGCAGCAGCAACAGCAACAGCAACACATGCAAATGCAGCAGATTCTGATGCAAAGACATCAGCAGCAACAACAACAGCAACAACAGCAGCAACAGCAGCAACAACAACAGCAGCCACAGCAACAACAACAACAGCCACAGCAACAACAACAGCCACAACAGAGAAGAGATGGGGCCCATCTCTTAAATGGAAATACAAATGGGCTTGTTGGAAATGATCCTCTCATGCGACAAAATCCTGGAACAGCAAATGCTATGGCTACAAAGATGTACGAGGAAAGATTAAAACTCCCTCAGAGATTGGATGATGCATCTCTAAAGAGATTTGGTGAGAATGTGGGCCAGCTTTTGGATCAAAATCATGCTTCAATATTAAAGTCAGCTGCAGCAGCTGGTCAGCCTTCAGGGCAAGTTTTGCATGGTACAGCCGGTGGGATGACTCAACAAGTCCAAGCTCGAAATCAGCAACTGCCAGGATCTACGCCGGATATAAAGACAGAAATTAATCCTGTATTGAATCCAAGAGCTCCTGAGGGATCATTGATGGGAATTCCAGGGTCTAATCAGGGTGGTAACAATCTGACTTTGAAAGGATGGCCACTCACAGGTCTGGATCAACTTCGCTCTGGACTTCTTCAGCAACAAAAACCTTTTATACAAGCTCCCCAGCCCTTTCATCAGCTTCAAATGCTGACACCACAACACCAGCAACAACTTATGCTTGCCCAGCAAAATTTGACATCCCCATCTGCCAGTGATGATAGTAGAAGACTAAGAATGCTATTGAATAATCGAAGTATGGGGCTTGGAAAGGATGGCCTTTCAAATTCCGTTGGCGATGTAGTGCCAAATGTAGGATCACCTCTTCAAGCTGCAGGCTCTATGATGCCTCGTGGAGATACAGATATGCTGATGAAGTTAAAATTGGCTCAACTACAGCAACAGCAGAATAGTAATCCACAACAACAGCTTCAGCAGCATGCTCTTTCTGCTCAGCAGTTGCAAAGTTCAAATCATAATCCTCATCAGCAAGATAAAATGGGGGGTGCTGGCAGCATCACAATGGATGCTAGCATGTCAAACTCTTTTCGAGGAAATGATCAGGTGTCAAAAAACCAGCCTGGGAGGAAGAGAAAGCAGCCAGTGTCATCTTCAGGCCCTGCCAATAGCACGGGAACAGCAAACACAGCTGGACCTTCCCCGAGTTCAGCCCCTTCCACTCCTTCAACCCACACTCCTGGTGATGTAATATCAATGCCTGCCTTACCCCATAGTGGTGGTTCCTCTAAGCCTCTGATGATGTTTGGTGCTGATGGTACTGGTACGCTCACCTCACCCTCAAATCCACTGTGGGATGATAAAGATCTTGAATTGCAGGCTGATATGGATCGATTTGTGGAGGATGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCTCATGATGATGCAGACCCTAGAGATGCTGTTGGTCGAGGTATGGATGTCAGCAAAGGGTTCACATTTACGGAAGTAAACTCTGTTAAAGCAAGCACAAGCAAAGTTACTAGTTGTCACTTCTCATCGGATGGAAAACTTCTTACTAGTGGCGGCCATGATAAAAGGGCTGTATTATGGTACACTGATACTCTGAAGTCAAAATCTACACTTGAAGAACATTCAGCTTTGATAACTGATGTTCGGTTCAGTCCGAGCATTCCACGTCTTGCAACATCTTCATTCGACAAAACTGTCAGAGTCTGGGATGCTGATAATCCTGGTTATTCACTTCGTACATTCATGGGACATACTGCATCAGTGATGTCAGTAGATTTCCACCCGAACAAGGACGACCTTATATGTTCTTGTGATGGGGATGGTGAGATACGCTACTGGAGTATTAACAATGGCAGCTGTGCAAGAGTGTTCAAGGGTGGGACGACTCAGGTGAGATTCCAACCTCGTCTTGGAAGATATCTTGCTGCAGCAGCTGAGAATGTTGTATCTATACTGGATGTGGAGTCACAGGCTTGTCGGCATTCATTACAGGTCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

791

Amino Acids

87.09

Weight (kDa)

6.54

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 10 - 36 1.5e-06 LisH
WD40_Gbeta PF25391 611 - 756 7.4e-11 G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd PF25172 611 - 746 2.2e-13 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 614 - 677 6.4e-08 THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 614 - 784 1.5e-08 MABP1/WDR62 second WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 615 - 698 1.1e-06 CAF1B/HIR1 beta-propeller domain
WD40_CDC20-Fz PF24807 616 - 679 2e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 621 - 729 7.2e-18 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 622 - 788 5e-29 WDR5 beta-propeller domain
WD40_Prp19 PF24814 623 - 789 4.6e-22 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 623 - 698 1.6e-09 WDHD1 first WD40 domain
Beta-prop_EML_2 PF23414 623 - 744 9.5e-15 Echinoderm microtubule-associated protein second beta-propeller
EIF3I PF24805 626 - 697 2.1e-06 EIF3I
Beta-prop_TEP1_2nd PF25047 655 - 755 2.8e-07 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 656 - 749 4.6e-12 CDC20/Fizzy WD40 domain
WD40 PF00400 659 - 695 1.6e-07 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 666 - 788 8.8e-21 THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 681 - 781 2.1e-06 WDR90/POC16, second beta-propeller
WD40 PF00400 701 - 739 2.4e-06 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 704 - 788 9.9e-09 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2069
AccB7I CCANNNNNTGG 1 cut(s) 688
AciI CCGC 1 cut(s) 1929
AclWI GGATC 9 cut(s) 116, 551, 699, 823, 883, 960, 1204, 1734, 1753
AcoI YGGCCR 2 cut(s) 935, 1930
AcsI RAATTY 3 cut(s) 888, 1072, 1165
AcuI CTGAAG 6 cut(s) 123, 726, 959, 1295, 1476, 1991
AfaI GTAC 6 cut(s) 611, 763, 1657, 1663, 1958, 2113
AfiI CCNNNNNNNGG 6 cut(s) 688, 944, 1193, 1613, 2164, 2285
AhlI ACTAGT 2 cut(s) 1886, 1922
AjiI CACGTC 1 cut(s) 2042
AjnI CCWGG 6 cut(s) 577, 811, 892, 1459, 1576, 2095
AjuI GAANNNNNNNTTGG 2 cut(s) 1247, 1279
Alw21I GWGCWC 1 cut(s) 868
Alw26I GTCTC 3 cut(s) 9, 63, 233
AlwI GGATC 9 cut(s) 116, 551, 699, 823, 883, 960, 1204, 1734, 1753
AlwNI CAGNNNCTG 6 cut(s) 385, 731, 808, 1499, 2079, 2309
Ama87I CYCGRG 1 cut(s) 1540
AoxI GGCC 6 cut(s) 513, 679, 935, 1156, 1495, 1930
ApaI GGGCCC 1 cut(s) 517
ApoI RAATTY 3 cut(s) 888, 1072, 1165
AseI ATTAAT 1 cut(s) 843
AspS9I GGNCC 6 cut(s) 198, 513, 514, 679, 1496, 1532
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 7 cut(s) 680, 1191, 1592, 1660, 1665, 2210, 2278
AsuNHI GCTAGC 1 cut(s) 1409
AvaI CYCGRG 1 cut(s) 1540
AvaII GGWCC 2 cut(s) 198, 1532
AxyI CCTNAGG 1 cut(s) 870
BaeGI GKGCMC 1 cut(s) 517
BalI TGGCCA 1 cut(s) 937
BanII GRGCYC 2 cut(s) 517, 868
BauI CACGAG 1 cut(s) 1230
BbsI GAAGAC 1 cut(s) 1114
Bbv12I GWGCWC 1 cut(s) 868
BciT130I CCWGG 6 cut(s) 579, 813, 894, 1461, 1578, 2097
BclI TGATCA 1 cut(s) 1438
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 3 cut(s) 9, 63, 233
BcuI ACTAGT 2 cut(s) 1886, 1922
BfaI CTAG 6 cut(s) 59, 195, 1410, 1797, 1887, 1923
BfmI CTRYAG 4 cut(s) 723, 1212, 1274, 2301
BglI GCCNNNNNGGC 1 cut(s) 745
BglII AGATCT 1 cut(s) 1702
BlpI GCTNAGC 1 cut(s) 1332
Bme1390I CCNGG 7 cut(s) 144, 579, 813, 894, 1461, 1578, 2097
Bme18I GGWCC 2 cut(s) 198, 1532
BmeT110I CYCGRG 1 cut(s) 1540
BmgBI CACGTC 1 cut(s) 2042
BmgT120I GGNCC 6 cut(s) 198, 513, 514, 679, 1496, 1532
BmiI GGNNCC 3 cut(s) 514, 515, 1621
BmrFI CCNGG 7 cut(s) 144, 579, 813, 894, 1461, 1578, 2097
BmrI ACTGGG 1 cut(s) 25
BmtI GCTAGC 1 cut(s) 1413
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 1114
BpmI CTGGAG 1 cut(s) 2233
Bpu1102I GCTNAGC 1 cut(s) 1332
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 144
Bsa29I ATCGAT 1 cut(s) 1729
BsaBI GATNNNNATC 3 cut(s) 696, 1701, 1725
BsaJI CCNNGG 2 cut(s) 893, 1460
BsaXI ACNNNNNCTCC 2 cut(s) 1558, 1588
Bsc4I CCNNNNNNNGG 6 cut(s) 688, 944, 1193, 1613, 2164, 2285
Bse118I RCCGGY 1 cut(s) 767
Bse1I ACTGG 6 cut(s) 20, 1092, 1481, 1663, 2216, 2334
Bse21I CCTNAGG 1 cut(s) 870
Bse8I GATNNNNATC 3 cut(s) 696, 1701, 1725
BseBI CCWGG 6 cut(s) 579, 813, 894, 1461, 1578, 2097
BseCI ATCGAT 1 cut(s) 1729
BseDI CCNNGG 2 cut(s) 893, 1460
BseJI GATNNNNATC 3 cut(s) 696, 1701, 1725
BseLI CCNNNNNNNGG 6 cut(s) 688, 944, 1193, 1613, 2164, 2285
BseMII CTCAG 6 cut(s) 20, 647, 861, 1346, 2276, 2301
BseNI ACTGG 6 cut(s) 20, 1092, 1481, 1663, 2216, 2334
BseSI GKGCMC 1 cut(s) 517
BseYI CCCAGC 3 cut(s) 309, 1005, 1065
BshFI GGCC 6 cut(s) 515, 681, 937, 1158, 1497, 1932
BshVI ATCGAT 1 cut(s) 1729
BsiHKAI GWGCWC 1 cut(s) 868
BsiHKCI CYCGRG 1 cut(s) 1540
BsiSI CCGG 3 cut(s) 143, 768, 824
BslFI GGGAC 2 cut(s) 2136, 2269
BslI CCNNNNNNNGG 6 cut(s) 688, 944, 1193, 1613, 2164, 2285
BsmAI GTCTC 3 cut(s) 9, 63, 233
BsmFI GGGAC 2 cut(s) 2136, 2269
BsmI GAATGC 4 cut(s) 211, 1122, 2034, 2356
BsnI GGCC 6 cut(s) 515, 681, 937, 1158, 1497, 1932
BsoBI CYCGRG 1 cut(s) 1540
Bsp120I GGGCCC 1 cut(s) 513
Bsp1286I GDGCHC 2 cut(s) 517, 868
Bsp1720I GCTNAGC 1 cut(s) 1332
BspACI CCGC 1 cut(s) 1929
BspANI GGCC 6 cut(s) 515, 681, 937, 1158, 1497, 1932
BspCNI CTCAG 6 cut(s) 19, 646, 862, 1345, 2275, 2302
BspDI ATCGAT 1 cut(s) 1729
BspHI TCATGA 1 cut(s) 1780
BspLI GGNNCC 3 cut(s) 514, 515, 1621
BspMAI CTGCAG 3 cut(s) 727, 1216, 2305
BspOI GCTAGC 1 cut(s) 1413
BspPI GGATC 9 cut(s) 116, 551, 699, 823, 883, 960, 1204, 1734, 1753
BsrFI RCCGGY 1 cut(s) 767
BsrI ACTGG 6 cut(s) 20, 1092, 1481, 1663, 2216, 2334
BssAI RCCGGY 1 cut(s) 767
BssECI CCNNGG 2 cut(s) 893, 1460
BssSI CACGAG 1 cut(s) 1230
Bst2BI CACGAG 1 cut(s) 1230
Bst2UI CCWGG 6 cut(s) 579, 813, 894, 1461, 1578, 2097
Bst4CI ACNGT 3 cut(s) 246, 1689, 2071
Bst6I CTCTTC 3 cut(s) 499, 1209, 1463
BstAPI GCANNNNNTGC 2 cut(s) 367, 754
BstC8I GCNNGC 9 cut(s) 683, 1062, 1216, 1320, 1390, 1411, 1599, 1716, 1870
BstDEI CTNAG 8 cut(s) 6, 633, 870, 1112, 1332, 1626, 2262, 2310
BstMAI GTCTC 3 cut(s) 9, 63, 233
BstNI CCWGG 6 cut(s) 579, 813, 894, 1461, 1578, 2097
BstNSI RCATGY 3 cut(s) 370, 1322, 1417
BstSCI CCNGG 7 cut(s) 142, 577, 811, 892, 1459, 1576, 2095
BstSFI CTRYAG 4 cut(s) 723, 1212, 1274, 2301
BstSLI GKGCMC 1 cut(s) 517
BstV2I GAAGAC 1 cut(s) 1114
BstX2I RGATCY 3 cut(s) 815, 1702, 1745
BstXI CCANNNNNNTGG 2 cut(s) 1577, 1616
BstYI RGATCY 3 cut(s) 815, 1702, 1745
Bsu15I ATCGAT 1 cut(s) 1729
Bsu36I CCTNAGG 1 cut(s) 870
BsuRI GGCC 6 cut(s) 515, 681, 937, 1158, 1497, 1932
BsuTUI ATCGAT 1 cut(s) 1729
BtgZI GCGATG 1 cut(s) 1191
BtrI CACGTC 1 cut(s) 2042
BtsIMutI CAGTG 5 cut(s) 1099, 1488, 1685, 1959, 2142
Cac8I GCNNGC 9 cut(s) 683, 1062, 1216, 1320, 1390, 1411, 1599, 1716, 1870
CaiI CAGNNNCTG 6 cut(s) 385, 731, 808, 1499, 2079, 2309
CciI TCATGA 1 cut(s) 1780
Cfr10I RCCGGY 1 cut(s) 767
Cfr13I GGNCC 6 cut(s) 198, 513, 514, 679, 1496, 1532
ClaI ATCGAT 1 cut(s) 1729
Csp6I GTAC 6 cut(s) 610, 762, 1656, 1662, 1957, 2112
CviQI GTAC 6 cut(s) 610, 762, 1656, 1662, 1957, 2112
DdeI CTNAG 8 cut(s) 6, 633, 870, 1112, 1332, 1626, 2262, 2310
DrdI GACNNNNNNGTC 1 cut(s) 2069
DseDI GACNNNNNNGTC 1 cut(s) 2069
EaeI YGGCCR 2 cut(s) 935, 1930
Eam1104I CTCTTC 3 cut(s) 499, 1209, 1463
EarI CTCTTC 3 cut(s) 499, 1209, 1463
Ecl136II GAGCTC 1 cut(s) 866
Eco24I GRGCYC 2 cut(s) 517, 868
Eco32I GATATC 1 cut(s) 2294
Eco47I GGWCC 2 cut(s) 198, 1532
Eco53kI GAGCTC 1 cut(s) 866
Eco57I CTGAAG 6 cut(s) 123, 726, 959, 1295, 1476, 1991
Eco81I CCTNAGG 1 cut(s) 870
Eco88I CYCGRG 1 cut(s) 1540
EcoICRI GAGCTC 1 cut(s) 866
EcoO109I RGGNCCY 2 cut(s) 513, 1496
EcoRI GAATTC 1 cut(s) 888
EcoRII CCWGG 6 cut(s) 577, 811, 892, 1459, 1576, 2095
EcoRV GATATC 1 cut(s) 2294
EcoT22I ATGCAT 1 cut(s) 652
EcoT38I GRGCYC 2 cut(s) 517, 868
FaqI GGGAC 2 cut(s) 2136, 2269
FbaI TGATCA 1 cut(s) 1438
FriOI GRGCYC 2 cut(s) 517, 868
FspBI CTAG 6 cut(s) 59, 195, 1410, 1797, 1887, 1923
GsaI CCCAGC 3 cut(s) 313, 1009, 1069
GsuI CTGGAG 1 cut(s) 2233
HaeIII GGCC 6 cut(s) 515, 681, 937, 1158, 1497, 1932
HapII CCGG 3 cut(s) 143, 768, 824
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 8 cut(s) 382, 778, 856, 1766, 2076, 2260, 2271, 2339
HpaII CCGG 3 cut(s) 143, 768, 824
HphI GGTGA 7 cut(s) 680, 1191, 1592, 1660, 1665, 2210, 2278
Hpy166II GTNNAC 3 cut(s) 1839, 1855, 1959
Hpy188III TCNNGA 7 cut(s) 238, 869, 950, 966, 1706, 1751, 1781
Hpy8I GTNNAC 3 cut(s) 1839, 1855, 1959
HpyAV CCTTC 6 cut(s) 98, 103, 750, 1545, 1563, 1572
HpyCH4III ACNGT 3 cut(s) 246, 1689, 2071
HpyCH4IV ACGT 1 cut(s) 2041
HpyF3I CTNAG 8 cut(s) 6, 633, 870, 1112, 1332, 1626, 2262, 2310
HpySE526I ACGT 1 cut(s) 2041
Ksp22I TGATCA 1 cut(s) 1438
LmnI GCTCC 3 cut(s) 262, 871, 1006
MaeI CTAG 6 cut(s) 59, 195, 1410, 1797, 1887, 1923
MaeII ACGT 1 cut(s) 2041
MaeIII GTNAC 4 cut(s) 911, 1882, 1892, 2340
MboII GAAGA 9 cut(s) 516, 965, 1119, 1196, 1480, 1482, 2003, 2046, 2301
MflI RGATCY 3 cut(s) 815, 1702, 1745
MhlI GDGCHC 2 cut(s) 517, 868
MlsI TGGCCA 1 cut(s) 937
MluCI AATT 6 cut(s) 840, 888, 1072, 1165, 1262, 1709
MluNI TGGCCA 1 cut(s) 937
MlyI GAGTC 5 cut(s) 772, 1775, 2085, 2254, 2348
MmeI TCCRAC 2 cut(s) 529, 2299
Mox20I TGGCCA 1 cut(s) 937
Mph1103I ATGCAT 1 cut(s) 652
MscI TGGCCA 1 cut(s) 937
MslI CAYNNNNRTG 4 cut(s) 371, 1400, 1614, 1785
Msp20I TGGCCA 1 cut(s) 937
MspA1I CMGCKG 5 cut(s) 722, 731, 1529, 2232, 2309
MspI CCGG 3 cut(s) 143, 768, 824
MspR9I CCNGG 7 cut(s) 144, 579, 813, 894, 1461, 1578, 2097
Mva1269I GAATGC 4 cut(s) 211, 1122, 2034, 2356
MvaI CCWGG 6 cut(s) 579, 813, 894, 1461, 1578, 2097
NciI CCSGG 1 cut(s) 144
NheI GCTAGC 1 cut(s) 1409
NlaIV GGNNCC 3 cut(s) 514, 515, 1621
NmuCI GTSAC 2 cut(s) 1892, 2340
NsiI ATGCAT 1 cut(s) 652
NspI RCATGY 3 cut(s) 370, 1322, 1417
PaeI GCATGC 1 cut(s) 1322
PagI TCATGA 1 cut(s) 1780
PctI GAATGC 4 cut(s) 211, 1122, 2034, 2356
PfeI GAWTC 3 cut(s) 382, 856, 2271
PflMI CCANNNNNTGG 1 cut(s) 688
PfoI TCCNGGA 1 cut(s) 577
PleI GAGTC 5 cut(s) 772, 1774, 2084, 2254, 2347
PpsI GAGTC 5 cut(s) 772, 1774, 2084, 2254, 2347
PshBI ATTAAT 1 cut(s) 843
Psp124BI GAGCTC 1 cut(s) 868
Psp6I CCWGG 6 cut(s) 577, 811, 892, 1459, 1576, 2095
PspFI CCCAGC 3 cut(s) 309, 1005, 1065
PspGI CCWGG 6 cut(s) 577, 811, 892, 1459, 1576, 2095
PspN4I GGNNCC 3 cut(s) 514, 515, 1621
PspOMI GGGCCC 1 cut(s) 513
PspPI GGNCC 6 cut(s) 198, 513, 514, 679, 1496, 1532
PstI CTGCAG 3 cut(s) 727, 1216, 2305
PstNI CAGNNNCTG 6 cut(s) 385, 731, 808, 1499, 2079, 2309
PsuI RGATCY 3 cut(s) 815, 1702, 1745
PvuII CAGCTG 5 cut(s) 722, 731, 1529, 2232, 2309
RsaI GTAC 6 cut(s) 611, 763, 1657, 1663, 1958, 2113
RsaNI GTAC 6 cut(s) 610, 762, 1656, 1662, 1957, 2112
RseI CAYNNNNRTG 4 cut(s) 371, 1400, 1614, 1785
SacI GAGCTC 1 cut(s) 868
Sau96I GGNCC 6 cut(s) 198, 513, 514, 679, 1496, 1532
SchI GAGTC 5 cut(s) 772, 1775, 2085, 2254, 2348
ScrFI CCNGG 7 cut(s) 144, 579, 813, 894, 1461, 1578, 2097
SduI GDGCHC 2 cut(s) 517, 868
SfcI CTRYAG 4 cut(s) 723, 1212, 1274, 2301
SinI GGWCC 2 cut(s) 198, 1532
SmiMI CAYNNNNRTG 4 cut(s) 371, 1400, 1614, 1785
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
SpeI ACTAGT 2 cut(s) 1886, 1922
SphI GCATGC 1 cut(s) 1322
Sse9I AATT 6 cut(s) 840, 888, 1072, 1165, 1262, 1709
SsiI CCGC 1 cut(s) 1929
SspI AATATT 1 cut(s) 711
SspMI CTAG 6 cut(s) 59, 195, 1410, 1797, 1887, 1923
SstI GAGCTC 1 cut(s) 868
StyD4I CCNGG 7 cut(s) 142, 577, 811, 892, 1459, 1576, 2095
TaaI ACNGT 3 cut(s) 246, 1689, 2071
TaiI ACGT 1 cut(s) 2044
TaqI TCGA 7 cut(s) 237, 796, 1132, 1429, 1729, 1813, 2061
TasI AATT 6 cut(s) 840, 888, 1072, 1165, 1262, 1709
TauI GCSGC 1 cut(s) 1932
TfiI GAWTC 3 cut(s) 382, 856, 2271
TscAI CASTG 5 cut(s) 1099, 1488, 1692, 1966, 2142
TseFI GTSAC 2 cut(s) 1892, 2340
Tsp45I GTSAC 2 cut(s) 1892, 2340
TspDTI ATGAA 6 cut(s) 238, 1004, 1268, 2046, 2107, 2349
TspGWI ACGGA 2 cut(s) 1159, 1862
TspRI CASTG 5 cut(s) 1099, 1488, 1692, 1966, 2142
Van91I CCANNNNNTGG 1 cut(s) 688
VpaK11BI GGWCC 2 cut(s) 198, 1532
VspI ATTAAT 1 cut(s) 843
XapI RAATTY 3 cut(s) 888, 1072, 1165
XceI RCATGY 3 cut(s) 370, 1322, 1417
XcmI CCANNNNNNNNNTGG 2 cut(s) 524, 2282
XspI CTAG 6 cut(s) 59, 195, 1410, 1797, 1887, 1923
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.