Rh6BG529400

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000670
Physical Location & Seq
Reverse (-)
72013016 .. 72019258
6243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG529400.1

Sequence Viewer

Length: 1656 bp
ATGTCTCAGACTAACTGGGAAGCTGATAAAATGTTAGATGTCTATATCCATGATTATCTAGTGAAAAGAGACTTAAAGGCTTCTGCTCAAGCTTTCCAAGCTGAAGGGAAGGTGTCGTCTGATCCCGTTGCTATTGATGCACCGGGAGGTTTTCTATTTGAATGGTGGTCAGTTTTCTGGGATATATTTATTGCTAGGACCAATGAGAAGCATTCAGAGGTTGCTGCATCTTACATCGAGAGATTTGGTGAGAATGTGGGCCAGCTTTTGGATCAAAATCATGCTTCAATATTAAAGTCAGCTGCAGCAGCTGGTCAGCCTTCAGGGCAAGTTTTGCATGGTACAGCCGGTGGGATGACTCAACAAGTCCAAGCTCGAAATCAGCAACTGCCAGGATCTACGCCGGATATAAAGACAGAAATTAATCCTGTATTGAATCCAAGAGCTCCCGAGGGATCATTGATGGGAATTCCAGGGTCTAATCAGGGTGGTAACAATCTGACTTTGAAAGGATGGCCACTCACAGGTCTGGATCAACTTCGCTCTGGACTTCTTCAGCAACAAAAACCTTTTATACAAGCTCCCCAGCCCTTTCATCAGCTTCAAATGCTGACACCACAACACCAGCAACAACTTATGCTTGCCCAGCAAAATTTGACATCCCCATCTGCCAGTGATGATAGTAGAAGACTAAGAATGCTATTGAATAATCGAAGTATGGGGCTTGGAAAGGATGGCCTTTCAAATTCCGTTGGCGATGTAGTGCCAAATGTAGGATCACCTCTTCAAGCTGCAGGCTCTATGATGCCTCGTGGAGATACAGATATGCTGATGAAGTTAAAATTGGCTCAACTACAGCAACAGCAGAATAGTAATCCACAACAACAGCTTCAGCAGCATGCTCTTTCTGCTCAGCAGTTGCAAAGTTCAAATCATAATCCTCATCAGCAAGATAAAATGGGGGGTGCTGGCAGCATCACAATGGATACTAGCATGTCGAACTCTTTTCGAGGAAATGATCAGGTCTCAAAAAACCAGCCTGGGAGGAAGAGAAAGCAGCCAGTGTCATCTTCAGGCCCTGCCAATAGCACGGGAACAGCAAACACAGCTGGACCTTCCCCGAGTTCAGCCCCTTCCACTCCTTCAACCCACACTCCTGGTGATGTAATATCAATGCCTGCCTTACCCCATAGTGGTGGTTCCTCTAAGCCTCTGATGATGTTTGGTGCTGATGGTACTGGTACGCTCACCTCACCCTCAAATCCACTGGGTGGGACGACTCAGGTGAGATTCCAACCTCGTCTTGGAAGATATCTTGCTGCAGCAGCTGAGAATGTTGTATCTATACTGGATGTGGAGTCACAGGCTTGTCGGCATTCATTACAGGGACATACAAAGCCTATTAATTCTGTGTGCTGGGATCCTTCTGGTGAGTTCCTTGCATCCCTGAGTGAGGACTCGGTCAGAGTTTGGACTTTCGGATCAGGAAATGAAGGGGAATGTGTTCATGAATTGAGCTGTAATGGCAATAAATTTCATTCCTGTGTTTTCCATCCAACATATACTTCACTGCTGGTCATTGGTTGTTACCAGTCTTTGGAGCTATGGAACATGCAAGAGAACAAGACAATGACTCTATCAGCACATGAAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

551

Amino Acids

59.28

Weight (kDa)

6.49

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 10 - 36 1e-06 LisH
Beta-prop_WDR5 PF25175 426 - 549 2.9e-18 WDR5 beta-propeller domain
WD40_Prp19 PF24814 426 - 545 1.7e-12 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 427 - 539 5.5e-11 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 427 - 544 2.8e-10 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 436 - 548 1.2e-12 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 443 - 544 8.9e-06 CDC20/Fizzy WD40 domain
WD40 PF00400 457 - 491 9.5e-08 WD domain, G-beta repeat
Beta-prop_EIPR1 PF23609 460 - 547 4.4e-06 EIPR1 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 268, 1271, 1597
AclWI GGATC 9 cut(s) 116, 279, 403, 463, 540, 784, 1415, 1428, 1489
AcoI YGGCCR 1 cut(s) 515
AcsI RAATTY 4 cut(s) 468, 652, 745, 1532
AcuI CTGAAG 5 cut(s) 123, 306, 539, 875, 1056
AdeI CACNNNGTG 1 cut(s) 1271
AfaI GTAC 3 cut(s) 343, 1237, 1243
AfiI CCNNNNNNNGG 8 cut(s) 268, 524, 773, 1193, 1271, 1304, 1453, 1597
AjnI CCWGG 4 cut(s) 391, 472, 1039, 1156
AjuI GAANNNNNNNTTGG 4 cut(s) 827, 859, 1549, 1581
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 3 cut(s) 9, 63, 1030
AlwI GGATC 9 cut(s) 116, 279, 403, 463, 540, 784, 1415, 1428, 1489
AlwNI CAGNNNCTG 4 cut(s) 311, 388, 1079, 1328
Ama87I CYCGRG 2 cut(s) 449, 1120
AoxI GGCC 4 cut(s) 259, 515, 736, 1075
ApoI RAATTY 4 cut(s) 468, 652, 745, 1532
AseI ATTAAT 2 cut(s) 423, 1404
Asp700I GAANNNNTTC 1 cut(s) 1503
AspS9I GGNCC 4 cut(s) 198, 259, 1076, 1112
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 7 cut(s) 260, 771, 1172, 1240, 1245, 1297, 1442
AvaI CYCGRG 2 cut(s) 449, 1120
AvaII GGWCC 2 cut(s) 198, 1112
BalI TGGCCA 1 cut(s) 517
BamHI GGATCC 1 cut(s) 1420
BanII GRGCYC 1 cut(s) 448
BauI CACGAG 1 cut(s) 810
BbsI GAAGAC 1 cut(s) 694
Bbv12I GWGCWC 1 cut(s) 448
BccI CCATC 6 cut(s) 457, 507, 673, 728, 1226, 1560
BciT130I CCWGG 4 cut(s) 393, 474, 1041, 1158
BciVI GTATCC 1 cut(s) 979
BclI TGATCA 1 cut(s) 1018
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 3 cut(s) 9, 63, 1030
BfaI CTAG 3 cut(s) 59, 195, 990
BfmI CTRYAG 4 cut(s) 303, 792, 854, 1320
BfuI GTATCC 1 cut(s) 979
BglI GCCNNNNNGGC 1 cut(s) 325
BlpI GCTNAGC 1 cut(s) 912
Bme1390I CCNGG 5 cut(s) 144, 393, 474, 1041, 1158
Bme18I GGWCC 2 cut(s) 198, 1112
BmeT110I CYCGRG 2 cut(s) 449, 1120
BmgT120I GGNCC 4 cut(s) 198, 259, 1076, 1112
BmiI GGNNCC 2 cut(s) 1201, 1422
BmrFI CCNGG 5 cut(s) 144, 393, 474, 1041, 1158
BmrI ACTGGG 2 cut(s) 25, 1277
BmsI GCATC 5 cut(s) 127, 236, 795, 984, 1451
BmuI ACTGGG 2 cut(s) 25, 1277
BpiI GAAGAC 1 cut(s) 694
Bpu1102I GCTNAGC 1 cut(s) 912
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 144
BsaBI GATNNNNATC 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 1030
BsaJI CCNNGG 3 cut(s) 450, 473, 1040
BsaXI ACNNNNNCTCC 2 cut(s) 1138, 1168
Bsc4I CCNNNNNNNGG 8 cut(s) 268, 524, 773, 1193, 1271, 1304, 1453, 1597
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 7 cut(s) 20, 672, 1061, 1243, 1272, 1353, 1591
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 4 cut(s) 393, 474, 1041, 1158
BseDI CCNNGG 3 cut(s) 450, 473, 1040
BseGI GGATG 7 cut(s) 360, 518, 659, 739, 1357, 1442, 1552
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 8 cut(s) 268, 524, 773, 1193, 1271, 1304, 1453, 1597
BseMII CTCAG 5 cut(s) 20, 926, 1295, 1320, 1439
BseNI ACTGG 7 cut(s) 20, 672, 1061, 1243, 1272, 1353, 1591
BseYI CCCAGC 3 cut(s) 585, 645, 1416
BshFI GGCC 4 cut(s) 261, 517, 738, 1077
BsiHKAI GWGCWC 1 cut(s) 448
BsiHKCI CYCGRG 2 cut(s) 449, 1120
BsiSI CCGG 3 cut(s) 143, 348, 404
BslFI GGGAC 2 cut(s) 1288, 1401
BslI CCNNNNNNNGG 8 cut(s) 268, 524, 773, 1193, 1271, 1304, 1453, 1597
BsmAI GTCTC 3 cut(s) 9, 63, 1030
BsmFI GGGAC 2 cut(s) 1288, 1401
BsmI GAATGC 3 cut(s) 211, 702, 1375
BsnI GGCC 4 cut(s) 261, 517, 738, 1077
Bso31I GGTCTC 1 cut(s) 1030
BsoBI CYCGRG 2 cut(s) 449, 1120
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 9 cut(s) 121, 271, 395, 455, 532, 776, 1018, 1420, 1481
Bsp1720I GCTNAGC 1 cut(s) 912
BspANI GGCC 4 cut(s) 261, 517, 738, 1077
BspCNI CTCAG 5 cut(s) 19, 925, 1294, 1321, 1440
BspHI TCATGA 1 cut(s) 1507
BspLI GGNNCC 2 cut(s) 1201, 1422
BspMAI CTGCAG 3 cut(s) 307, 796, 1324
BspPI GGATC 9 cut(s) 116, 279, 403, 463, 540, 784, 1415, 1428, 1489
BspTNI GGTCTC 1 cut(s) 1030
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 7 cut(s) 20, 672, 1061, 1243, 1272, 1353, 1591
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 3 cut(s) 450, 473, 1040
BssMI GATC 9 cut(s) 121, 271, 395, 455, 532, 776, 1018, 1420, 1481
BssSI CACGAG 1 cut(s) 810
Bst2BI CACGAG 1 cut(s) 810
Bst2UI CCWGG 4 cut(s) 393, 474, 1041, 1158
Bst6I CTCTTC 2 cut(s) 789, 1043
BstAPI GCANNNNNTGC 1 cut(s) 334
BstC8I GCNNGC 6 cut(s) 263, 642, 796, 900, 970, 1179
BstDEI CTNAG 7 cut(s) 6, 692, 912, 1206, 1281, 1329, 1448
BstENI CCTNNNNNAGG 1 cut(s) 1451
BstF5I GGATG 7 cut(s) 360, 518, 659, 739, 1357, 1442, 1552
BstKTI GATC 9 cut(s) 124, 274, 398, 458, 535, 779, 1021, 1423, 1484
BstMAI GTCTC 3 cut(s) 9, 63, 1030
BstMBI GATC 9 cut(s) 121, 271, 395, 455, 532, 776, 1018, 1420, 1481
BstNI CCWGG 4 cut(s) 393, 474, 1041, 1158
BstNSI RCATGY 3 cut(s) 902, 997, 1615
BstSCI CCNGG 5 cut(s) 142, 391, 472, 1039, 1156
BstSFI CTRYAG 4 cut(s) 303, 792, 854, 1320
BstV2I GAAGAC 1 cut(s) 694
BstX2I RGATCY 2 cut(s) 395, 1420
BstXI CCANNNNNNTGG 2 cut(s) 1157, 1196
BstYI RGATCY 2 cut(s) 395, 1420
BsuI GTATCC 1 cut(s) 979
BsuRI GGCC 4 cut(s) 261, 517, 738, 1077
BtgZI GCGATG 1 cut(s) 771
BtsCI GGATG 7 cut(s) 360, 518, 659, 739, 1357, 1442, 1552
BtsI GCAGTG 1 cut(s) 1568
BtsIMutI CAGTG 4 cut(s) 679, 1068, 1265, 1568
Cac8I GCNNGC 6 cut(s) 263, 642, 796, 900, 970, 1179
CaiI CAGNNNCTG 4 cut(s) 311, 388, 1079, 1328
CciI TCATGA 1 cut(s) 1507
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 4 cut(s) 198, 259, 1076, 1112
Csp6I GTAC 3 cut(s) 342, 1236, 1242
CviAII CATG 8 cut(s) 50, 281, 338, 899, 994, 1508, 1612, 1646
CviQI GTAC 3 cut(s) 342, 1236, 1242
DdeI CTNAG 7 cut(s) 6, 692, 912, 1206, 1281, 1329, 1448
DpnI GATC 9 cut(s) 123, 273, 397, 457, 534, 778, 1020, 1422, 1483
DpnII GATC 9 cut(s) 121, 271, 395, 455, 532, 776, 1018, 1420, 1481
DraIII CACNNNGTG 1 cut(s) 1271
EaeI YGGCCR 1 cut(s) 515
Eam1104I CTCTTC 2 cut(s) 789, 1043
EarI CTCTTC 2 cut(s) 789, 1043
Ecl136II GAGCTC 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 448
Eco31I GGTCTC 1 cut(s) 1030
Eco32I GATATC 1 cut(s) 1313
Eco47I GGWCC 2 cut(s) 198, 1112
Eco53kI GAGCTC 1 cut(s) 446
Eco57I CTGAAG 5 cut(s) 123, 306, 539, 875, 1056
Eco88I CYCGRG 2 cut(s) 449, 1120
EcoICRI GAGCTC 1 cut(s) 446
EcoNI CCTNNNNNAGG 1 cut(s) 1451
EcoO109I RGGNCCY 1 cut(s) 1076
EcoRI GAATTC 1 cut(s) 468
EcoRII CCWGG 4 cut(s) 391, 472, 1039, 1156
EcoRV GATATC 1 cut(s) 1313
EcoT38I GRGCYC 1 cut(s) 448
FaeI CATG 8 cut(s) 53, 284, 341, 902, 997, 1511, 1615, 1649
FaqI GGGAC 2 cut(s) 1288, 1401
FatI CATG 8 cut(s) 49, 280, 337, 898, 993, 1507, 1611, 1645
FbaI TGATCA 1 cut(s) 1018
FokI GGATG 7 cut(s) 367, 525, 646, 746, 1364, 1429, 1539
FriOI GRGCYC 1 cut(s) 448
FspBI CTAG 3 cut(s) 59, 195, 990
GsaI CCCAGC 3 cut(s) 589, 649, 1420
HaeIII GGCC 4 cut(s) 261, 517, 738, 1077
HapII CCGG 3 cut(s) 143, 348, 404
Hin1II CATG 8 cut(s) 53, 284, 341, 902, 997, 1511, 1615, 1649
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 7 cut(s) 358, 436, 1279, 1290, 1358, 1457, 1633
HpaII CCGG 3 cut(s) 143, 348, 404
HphI GGTGA 7 cut(s) 260, 771, 1172, 1240, 1245, 1297, 1442
Hpy188I TCNGA 7 cut(s) 9, 121, 217, 501, 1215, 1466, 1481
Hpy188III TCNNGA 6 cut(s) 238, 449, 530, 546, 1485, 1508
HpyAV CCTTC 9 cut(s) 98, 103, 330, 1125, 1143, 1152, 1434, 1487, 1643
HpyCH4V TGCA 9 cut(s) 140, 227, 305, 337, 794, 922, 1322, 1442, 1615
HpyF3I CTNAG 7 cut(s) 6, 692, 912, 1206, 1281, 1329, 1448
Hsp92II CATG 8 cut(s) 53, 284, 341, 902, 997, 1511, 1615, 1649
Ksp22I TGATCA 1 cut(s) 1018
Kzo9I GATC 9 cut(s) 121, 271, 395, 455, 532, 776, 1018, 1420, 1481
LmnI GCTCC 3 cut(s) 451, 586, 1600
LweI GCATC 5 cut(s) 127, 236, 795, 984, 1451
MaeI CTAG 3 cut(s) 59, 195, 990
MaeIII GTNAC 3 cut(s) 491, 1359, 1586
MalI GATC 9 cut(s) 123, 273, 397, 457, 534, 778, 1020, 1422, 1483
MboI GATC 9 cut(s) 121, 271, 395, 455, 532, 776, 1018, 1420, 1481
MboII GAAGA 6 cut(s) 545, 699, 776, 1060, 1062, 1320
MflI RGATCY 2 cut(s) 395, 1420
MhlI GDGCHC 1 cut(s) 448
MlsI TGGCCA 1 cut(s) 517
MluCI AATT 8 cut(s) 420, 468, 652, 745, 842, 1405, 1511, 1532
MluNI TGGCCA 1 cut(s) 517
MlyI GAGTC 5 cut(s) 352, 1273, 1367, 1451, 1627
MmeI TCCRAC 2 cut(s) 1318, 1580
Mox20I TGGCCA 1 cut(s) 517
MroXI GAANNNNTTC 1 cut(s) 1503
MscI TGGCCA 1 cut(s) 517
MseI TTAA 5 cut(s) 74, 293, 423, 839, 1404
MslI CAYNNNNRTG 3 cut(s) 980, 1194, 1542
Msp20I TGGCCA 1 cut(s) 517
MspA1I CMGCKG 4 cut(s) 302, 311, 1109, 1328
MspI CCGG 3 cut(s) 143, 348, 404
MspR9I CCNGG 5 cut(s) 144, 393, 474, 1041, 1158
Mva1269I GAATGC 3 cut(s) 211, 702, 1375
MvaI CCWGG 4 cut(s) 393, 474, 1041, 1158
NciI CCSGG 1 cut(s) 144
NdeII GATC 9 cut(s) 121, 271, 395, 455, 532, 776, 1018, 1420, 1481
NlaIII CATG 8 cut(s) 53, 284, 341, 902, 997, 1511, 1615, 1649
NlaIV GGNNCC 2 cut(s) 1201, 1422
NmuCI GTSAC 1 cut(s) 1359
NspI RCATGY 3 cut(s) 902, 997, 1615
PaeI GCATGC 1 cut(s) 902
PagI TCATGA 1 cut(s) 1507
PctI GAATGC 3 cut(s) 211, 702, 1375
PdmI GAANNNNTTC 1 cut(s) 1503
PfeI GAWTC 2 cut(s) 436, 1290
PflFI GACNNNGTC 1 cut(s) 1460
PflMI CCANNNNNTGG 3 cut(s) 268, 1271, 1597
PleI GAGTC 5 cut(s) 352, 1273, 1366, 1451, 1627
PpsI GAGTC 5 cut(s) 352, 1273, 1366, 1451, 1627
PshBI ATTAAT 2 cut(s) 423, 1404
Psp124BI GAGCTC 1 cut(s) 448
Psp6I CCWGG 4 cut(s) 391, 472, 1039, 1156
PspFI CCCAGC 3 cut(s) 585, 645, 1416
PspGI CCWGG 4 cut(s) 391, 472, 1039, 1156
PspN4I GGNNCC 2 cut(s) 1201, 1422
PspPI GGNCC 4 cut(s) 198, 259, 1076, 1112
PstI CTGCAG 3 cut(s) 307, 796, 1324
PstNI CAGNNNCTG 4 cut(s) 311, 388, 1079, 1328
PsuI RGATCY 2 cut(s) 395, 1420
PsyI GACNNNGTC 1 cut(s) 1460
PvuII CAGCTG 4 cut(s) 302, 311, 1109, 1328
RsaI GTAC 3 cut(s) 343, 1237, 1243
RsaNI GTAC 3 cut(s) 342, 1236, 1242
RseI CAYNNNNRTG 3 cut(s) 980, 1194, 1542
SacI GAGCTC 1 cut(s) 448
SaqAI TTAA 5 cut(s) 74, 293, 423, 839, 1404
Sau3AI GATC 9 cut(s) 121, 271, 395, 455, 532, 776, 1018, 1420, 1481
Sau96I GGNCC 4 cut(s) 198, 259, 1076, 1112
SchI GAGTC 5 cut(s) 352, 1273, 1367, 1451, 1627
ScrFI CCNGG 5 cut(s) 144, 393, 474, 1041, 1158
SduI GDGCHC 1 cut(s) 448
SfaNI GCATC 5 cut(s) 127, 236, 795, 984, 1451
SfcI CTRYAG 4 cut(s) 303, 792, 854, 1320
SinI GGWCC 2 cut(s) 198, 1112
SmiMI CAYNNNNRTG 3 cut(s) 980, 1194, 1542
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
SphI GCATGC 1 cut(s) 902
Sse9I AATT 8 cut(s) 420, 468, 652, 745, 842, 1405, 1511, 1532
SspI AATATT 1 cut(s) 291
SspMI CTAG 3 cut(s) 59, 195, 990
SstI GAGCTC 1 cut(s) 448
StyD4I CCNGG 5 cut(s) 142, 391, 472, 1039, 1156
TaqI TCGA 5 cut(s) 237, 376, 712, 998, 1009
TaqII GACCGA 1 cut(s) 1450
TasI AATT 8 cut(s) 420, 468, 652, 745, 842, 1405, 1511, 1532
TfiI GAWTC 2 cut(s) 436, 1290
Tru1I TTAA 5 cut(s) 74, 293, 423, 839, 1404
Tru9I TTAA 5 cut(s) 74, 293, 423, 839, 1404
TscAI CASTG 4 cut(s) 679, 1068, 1272, 1575
TseFI GTSAC 1 cut(s) 1359
Tsp45I GTSAC 1 cut(s) 1359
TspDTI ATGAA 7 cut(s) 584, 848, 1368, 1496, 1506, 1524, 1526
TspGWI ACGGA 1 cut(s) 739
TspRI CASTG 4 cut(s) 679, 1068, 1272, 1575
Tth111I GACNNNGTC 1 cut(s) 1460
Van91I CCANNNNNTGG 3 cut(s) 268, 1271, 1597
VpaK11BI GGWCC 2 cut(s) 198, 1112
VspI ATTAAT 2 cut(s) 423, 1404
XagI CCTNNNNNAGG 1 cut(s) 1451
XapI RAATTY 4 cut(s) 468, 652, 745, 1532
XceI RCATGY 3 cut(s) 902, 997, 1615
XcmI CCANNNNNNNNNTGG 1 cut(s) 1301
XmnI GAANNNNTTC 1 cut(s) 1503
XspI CTAG 3 cut(s) 59, 195, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.