Rh6CG533900

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000670
Physical Location & Seq
Reverse (-)
68700124 .. 68706283
6160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG533900.1

Sequence Viewer

Length: 2271 bp
ATGTCTCAGACTAACTGGGAAGCTGATAAAATGTTAGATGTCTATATCCATGATTATCTAGTGAAAAGAGACTTAAAGGCTTCTGCTCAAGCTTTCCAAGCTGAAGGGAAGGTGTCGTCTGATCCCGTTGCTATTGATGCACCGGGAGGTTTTCTATTTGAATGGTGGTCAGTTTTCTGGGATATATTTATTGCTAGGACCAATGAGAAGCATTCAGAGGTTGCTGCATCTTACATCGAGAGATTTGGTGAGAATGTGGGCCAGCTTTTGGATCAAAATCATGCTTCAATATTAAAGTCAGCTGCAGCAGCTGGTCAGCCTTCAGGGCAAGTTTTGCATGGTACAGCCGGTGGGATGACTCAACAAGTCCAAGCTCGAAATCAGCAACTGCCAGGATCTACGCCGGATATAAAGACAGAAATTAATCCTGTATTGAATCCAAGAGCTCCCGAGGGATCATTGATGGGAATTCCAGGGTCTAATCAGGGTGGTAACAATCTGACTTTGAAAGGATGGCCACTCACAGGTCTGGATCAACTTCGCTCTGGACTTCTTCAGCAACAAAAACCTTTTATACAAGCTCCCCAGCCCTTTCATCAGCTTCAAATGCTGACACCACAACACCAGCAACAACTTATGCTTGCCCAGCAAAATTTGACATCCCCATCTGCCAGTGATGATAGTAGAAGACTAAGAATGCTATTGAATAATCGAAGTATGGGGCTTGGAAAGGATGGCCTTTCAAATTCCGTTGGCGATGTAGTGTCAAATGTAGGATCACCTCTTCAAGCTGCAGGCTCTATGATGCCTCGTGGAGATACAGATATGCTGATGAAGTTAAAATTGGCTCAACTACAGCAACAGCAGAATAGTAATCCACAACAACAGCTTCAGCAGCATGCTCTTTCTGCTCAGCAGTTGCAAAGTTCAAATCATAATCCTCATCAGCAAGATAAAATGGGGGGTGCTGGCAGCATCACAATGGATGCTAGCATGTCGAACTCTTTTCGAGGAAATGATCAGGTCTCAAAAAACCAGCCTGGGAGGAAGAGAAAGCAGCCAGTGTCATCTTCAGGCCCTGCCAATAGCACGGGAACAGCAAACACAGCTGGACCTTCCCCGAGTTCAGCCCCTTCCACTCCTTCAACCCACACTCCTGGTGATGTAATATCAATGCCTGCCTTACCCCATAGTGGTGGTTCCTCTAAGCCTCTGATGATGTTTGGTGCTGATGGTACTGGTACGCTCACCTCACCCTCAAATCCACTGGCTGATATGGATCGATTTGTGGAGGATGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCTCATGATGATGCAGACCCTAGAGATGCTGTTGGTCGAGGTATGGATGTCAGCAAAGGGTTCACATTTACGGAAGTAAACTCTGTTAAAGCAAGCCCAAGCAAAGTTACTAGTTGTCACTTCTCATCGGATGGAAAACTTCTTACTAGTGGCGGCCATGATAAAAAGGCTGTATTATGGTACACTGATACTCTGAAGTCAAAATCTACACTTGAAGAACATTCAGCTTTGATAACTGATGTTCGGTTCAGTCCGAGCATTCCACGTCTTGCAACATCTTCATTCGACAAAACTGTCAGAGTCTGGGATGCTGATAATCCTGGTTATTCACTTCGTACATTCATGGGACATACTGCATCAGTGATGTCAGTAGATTTCCACCCGAACAAGGACGACCTTATATGTTCTTGTGATGGGGATGGTGAGATACGCTACTGGAGTATTAACAATGGCAGCTGTGCAAGAGTGTTCAAGGGTGGGACGACTCAGGTGAGATTCCAACCTCGTCTTGGAAGATATCTTGCTGCAGCAGCTGAGAATGTTGTATCTATACTGGATGTGGAGTCACAGGCTTGTCGGCATTCATTACAGGGACATACAAAGCCTATTAATTCTGTGTGCTGGGATCCTTCTGGTGAGTTCCTTGCATCCCTGAGTGAGGACTCGGTCAGAGTTTGGACTTTCGGATCAGGAAATGAAGGGGAATGTGTTCATGAATTGAGCTGTAATGGCAATAAATTTCATTCCTGTGTTTTCCATCCAACATATACTTCACTGCTGGTCATTGGTTGTTACCAGTCTTTGGAGCTATGGAACATGCAAGAGAACAAGACAATGACTCTATCAGCACATGAAGGTCTTATTGCTTCGTTGGCTGTGTCAACCGTAACGGGTTTGGTTGCTTCGGCTAGTCATGATAAGTGGGTTAAGCTCTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

756

Amino Acids

81.67

Weight (kDa)

6.18

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 10 - 36 1.5e-06 LisH
WD40_Gbeta PF25391 463 - 605 1.8e-10 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 465 - 528 1.3e-07 THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 465 - 669 1.3e-12 MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd PF25172 468 - 670 9.8e-18 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 474 - 606 1.2e-19 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 475 - 591 1.9e-20 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 475 - 595 1.3e-14 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 475 - 607 5.8e-27 WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 477 - 549 1.5e-06 CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st PF24817 477 - 549 4.7e-09 WDHD1 first WD40 domain
EIF3I PF24805 478 - 548 1.8e-06 EIF3I
Beta-prop_TEP1_2nd PF25047 506 - 605 3.4e-07 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 507 - 669 1.2e-17 CDC20/Fizzy WD40 domain
WD40 PF00400 510 - 546 1.5e-07 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 517 - 756 4.9e-38 THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 531 - 596 9.2e-06 WDR90/POC16, second beta-propeller
WD40 PF00400 552 - 590 2.3e-06 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 554 - 602 3.9e-07 WDHD1 first WD40 domain
WDR55 PF24796 561 - 726 3.2e-07 WDR55
WD40_Gbeta PF25391 574 - 755 6.1e-11 G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st PF25173 576 - 715 6.2e-15 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 603 - 755 8.7e-25 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 604 - 689 2e-10 WDHD1 first WD40 domain
WD40_Prp19 PF24814 605 - 755 1.6e-17 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 614 - 755 2.2e-08 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 615 - 749 5.6e-08 WDR36/Utp21 first beta-propeller
WD40 PF00400 635 - 669 1.4e-07 WD domain, G-beta repeat
Beta-prop_EIPR1 PF23609 638 - 726 3.2e-06 EIPR1 beta-propeller
Beta-prop_WDR3_1st PF25173 665 - 755 9.8e-06 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1622
AccB7I CCANNNNNTGG 2 cut(s) 268, 2131
AciI CCGC 1 cut(s) 1482
AcoI YGGCCR 2 cut(s) 515, 1483
AcsI RAATTY 4 cut(s) 468, 652, 745, 2066
AcuI CTGAAG 6 cut(s) 123, 306, 539, 875, 1056, 1544
AfaI GTAC 5 cut(s) 343, 1237, 1243, 1511, 1666
AfiI CCNNNNNNNGG 7 cut(s) 268, 524, 1193, 1717, 1838, 1987, 2131
AhlI ACTAGT 2 cut(s) 1439, 1475
AjiI CACGTC 1 cut(s) 1595
AjnI CCWGG 5 cut(s) 391, 472, 1039, 1156, 1648
AjuI GAANNNNNNNTTGG 4 cut(s) 827, 859, 2083, 2115
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 3 cut(s) 9, 63, 1030
AlwNI CAGNNNCTG 5 cut(s) 311, 388, 1079, 1632, 1862
Ama87I CYCGRG 2 cut(s) 449, 1120
AoxI GGCC 5 cut(s) 259, 515, 736, 1075, 1483
ApoI RAATTY 4 cut(s) 468, 652, 745, 2066
AseI ATTAAT 2 cut(s) 423, 1938
Asp700I GAANNNNTTC 1 cut(s) 2037
AspS9I GGNCC 4 cut(s) 198, 259, 1076, 1112
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 8 cut(s) 260, 771, 1172, 1240, 1245, 1763, 1831, 1976
AsuNHI GCTAGC 1 cut(s) 989
AvaI CYCGRG 2 cut(s) 449, 1120
AvaII GGWCC 2 cut(s) 198, 1112
BalI TGGCCA 1 cut(s) 517
BamHI GGATCC 1 cut(s) 1954
BanII GRGCYC 1 cut(s) 448
BauI CACGAG 1 cut(s) 810
BbsI GAAGAC 1 cut(s) 694
Bbv12I GWGCWC 1 cut(s) 448
BciT130I CCWGG 5 cut(s) 393, 474, 1041, 1158, 1650
BclI TGATCA 1 cut(s) 1018
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 3 cut(s) 9, 63, 1030
BcuI ACTAGT 2 cut(s) 1439, 1475
BfaI CTAG 7 cut(s) 59, 195, 990, 1350, 1440, 1476, 2238
BfmI CTRYAG 4 cut(s) 303, 792, 854, 1854
BglI GCCNNNNNGGC 1 cut(s) 325
BlpI GCTNAGC 1 cut(s) 912
Bme1390I CCNGG 6 cut(s) 144, 393, 474, 1041, 1158, 1650
Bme18I GGWCC 2 cut(s) 198, 1112
BmeT110I CYCGRG 2 cut(s) 449, 1120
BmgBI CACGTC 1 cut(s) 1595
BmgT120I GGNCC 4 cut(s) 198, 259, 1076, 1112
BmiI GGNNCC 2 cut(s) 1201, 1956
BmrFI CCNGG 6 cut(s) 144, 393, 474, 1041, 1158, 1650
BmrI ACTGGG 1 cut(s) 25
BmtI GCTAGC 1 cut(s) 993
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 694
BpmI CTGGAG 1 cut(s) 1786
Bpu1102I GCTNAGC 1 cut(s) 912
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 144
Bsa29I ATCGAT 1 cut(s) 1282
BsaBI GATNNNNATC 2 cut(s) 276, 1278
BsaI GGTCTC 1 cut(s) 1030
BsaJI CCNNGG 3 cut(s) 450, 473, 1040
BsaXI ACNNNNNCTCC 2 cut(s) 1138, 1168
Bsc4I CCNNNNNNNGG 7 cut(s) 268, 524, 1193, 1717, 1838, 1987, 2131
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 8 cut(s) 20, 672, 1061, 1243, 1272, 1769, 1887, 2125
Bse8I GATNNNNATC 2 cut(s) 276, 1278
BseBI CCWGG 5 cut(s) 393, 474, 1041, 1158, 1650
BseCI ATCGAT 1 cut(s) 1282
BseDI CCNNGG 3 cut(s) 450, 473, 1040
BseJI GATNNNNATC 2 cut(s) 276, 1278
BseLI CCNNNNNNNGG 7 cut(s) 268, 524, 1193, 1717, 1838, 1987, 2131
BseMII CTCAG 5 cut(s) 20, 926, 1829, 1854, 1973
BseNI ACTGG 8 cut(s) 20, 672, 1061, 1243, 1272, 1769, 1887, 2125
BseYI CCCAGC 3 cut(s) 585, 645, 1950
BshFI GGCC 5 cut(s) 261, 517, 738, 1077, 1485
BshVI ATCGAT 1 cut(s) 1282
BsiHKAI GWGCWC 1 cut(s) 448
BsiHKCI CYCGRG 2 cut(s) 449, 1120
BsiSI CCGG 3 cut(s) 143, 348, 404
BslFI GGGAC 3 cut(s) 1689, 1822, 1935
BslI CCNNNNNNNGG 7 cut(s) 268, 524, 1193, 1717, 1838, 1987, 2131
BsmAI GTCTC 3 cut(s) 9, 63, 1030
BsmFI GGGAC 3 cut(s) 1689, 1822, 1935
BsmI GAATGC 4 cut(s) 211, 702, 1587, 1909
BsnI GGCC 5 cut(s) 261, 517, 738, 1077, 1485
Bso31I GGTCTC 1 cut(s) 1030
BsoBI CYCGRG 2 cut(s) 449, 1120
Bsp1286I GDGCHC 1 cut(s) 448
Bsp1720I GCTNAGC 1 cut(s) 912
BspACI CCGC 1 cut(s) 1482
BspANI GGCC 5 cut(s) 261, 517, 738, 1077, 1485
BspCNI CTCAG 5 cut(s) 19, 925, 1828, 1855, 1974
BspDI ATCGAT 1 cut(s) 1282
BspHI TCATGA 3 cut(s) 1333, 2041, 2242
BspLI GGNNCC 2 cut(s) 1201, 1956
BspMAI CTGCAG 3 cut(s) 307, 796, 1858
BspOI GCTAGC 1 cut(s) 993
BspTNI GGTCTC 1 cut(s) 1030
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 8 cut(s) 20, 672, 1061, 1243, 1272, 1769, 1887, 2125
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 3 cut(s) 450, 473, 1040
BssSI CACGAG 1 cut(s) 810
Bst2BI CACGAG 1 cut(s) 810
Bst2UI CCWGG 5 cut(s) 393, 474, 1041, 1158, 1650
Bst4CI ACNGT 2 cut(s) 1624, 2215
Bst6I CTCTTC 2 cut(s) 789, 1043
BstAPI GCANNNNNTGC 1 cut(s) 334
BstC8I GCNNGC 8 cut(s) 263, 642, 796, 900, 970, 991, 1179, 1423
BstDEI CTNAG 7 cut(s) 6, 692, 912, 1206, 1815, 1863, 1982
BstENI CCTNNNNNAGG 1 cut(s) 1985
BstMAI GTCTC 3 cut(s) 9, 63, 1030
BstNI CCWGG 5 cut(s) 393, 474, 1041, 1158, 1650
BstNSI RCATGY 3 cut(s) 902, 997, 2149
BstSCI CCNGG 6 cut(s) 142, 391, 472, 1039, 1156, 1648
BstSFI CTRYAG 4 cut(s) 303, 792, 854, 1854
BstV2I GAAGAC 1 cut(s) 694
BstX2I RGATCY 3 cut(s) 395, 1298, 1954
BstXI CCANNNNNNTGG 2 cut(s) 1157, 1196
BstYI RGATCY 3 cut(s) 395, 1298, 1954
Bsu15I ATCGAT 1 cut(s) 1282
BsuRI GGCC 5 cut(s) 261, 517, 738, 1077, 1485
BsuTUI ATCGAT 1 cut(s) 1282
BtgZI GCGATG 1 cut(s) 771
BtrI CACGTC 1 cut(s) 1595
BtsI GCAGTG 1 cut(s) 2102
BtsIMutI CAGTG 6 cut(s) 679, 1068, 1265, 1512, 1695, 2102
Cac8I GCNNGC 8 cut(s) 263, 642, 796, 900, 970, 991, 1179, 1423
CaiI CAGNNNCTG 5 cut(s) 311, 388, 1079, 1632, 1862
CciI TCATGA 3 cut(s) 1333, 2041, 2242
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 4 cut(s) 198, 259, 1076, 1112
ClaI ATCGAT 1 cut(s) 1282
Csp6I GTAC 5 cut(s) 342, 1236, 1242, 1510, 1665
CviQI GTAC 5 cut(s) 342, 1236, 1242, 1510, 1665
DdeI CTNAG 7 cut(s) 6, 692, 912, 1206, 1815, 1863, 1982
DrdI GACNNNNNNGTC 1 cut(s) 1622
DseDI GACNNNNNNGTC 1 cut(s) 1622
EaeI YGGCCR 2 cut(s) 515, 1483
Eam1104I CTCTTC 2 cut(s) 789, 1043
EarI CTCTTC 2 cut(s) 789, 1043
Ecl136II GAGCTC 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 448
Eco31I GGTCTC 1 cut(s) 1030
Eco32I GATATC 1 cut(s) 1847
Eco47I GGWCC 2 cut(s) 198, 1112
Eco53kI GAGCTC 1 cut(s) 446
Eco57I CTGAAG 6 cut(s) 123, 306, 539, 875, 1056, 1544
Eco88I CYCGRG 2 cut(s) 449, 1120
EcoICRI GAGCTC 1 cut(s) 446
EcoNI CCTNNNNNAGG 1 cut(s) 1985
EcoO109I RGGNCCY 1 cut(s) 1076
EcoRI GAATTC 1 cut(s) 468
EcoRII CCWGG 5 cut(s) 391, 472, 1039, 1156, 1648
EcoRV GATATC 1 cut(s) 1847
EcoT38I GRGCYC 1 cut(s) 448
FaqI GGGAC 3 cut(s) 1689, 1822, 1935
FbaI TGATCA 1 cut(s) 1018
FriOI GRGCYC 1 cut(s) 448
FspBI CTAG 7 cut(s) 59, 195, 990, 1350, 1440, 1476, 2238
GsaI CCCAGC 3 cut(s) 589, 649, 1954
GsuI CTGGAG 1 cut(s) 1786
HaeIII GGCC 5 cut(s) 261, 517, 738, 1077, 1485
HapII CCGG 3 cut(s) 143, 348, 404
HincII GTYRAC 1 cut(s) 2211
HindII GTYRAC 1 cut(s) 2211
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 9 cut(s) 358, 436, 1319, 1629, 1813, 1824, 1892, 1991, 2167
HpaII CCGG 3 cut(s) 143, 348, 404
HphI GGTGA 8 cut(s) 260, 771, 1172, 1240, 1245, 1763, 1831, 1976
Hpy166II GTNNAC 4 cut(s) 1392, 1408, 1512, 2211
Hpy8I GTNNAC 4 cut(s) 1392, 1408, 1512, 2211
HpyAV CCTTC 9 cut(s) 98, 103, 330, 1125, 1143, 1152, 1968, 2021, 2177
HpyCH4III ACNGT 2 cut(s) 1624, 2215
HpyCH4IV ACGT 1 cut(s) 1594
HpyF3I CTNAG 7 cut(s) 6, 692, 912, 1206, 1815, 1863, 1982
HpySE526I ACGT 1 cut(s) 1594
Ksp22I TGATCA 1 cut(s) 1018
LmnI GCTCC 3 cut(s) 451, 586, 2134
MaeI CTAG 7 cut(s) 59, 195, 990, 1350, 1440, 1476, 2238
MaeII ACGT 1 cut(s) 1594
MaeIII GTNAC 6 cut(s) 491, 1435, 1445, 1893, 2120, 2215
MboII GAAGA 8 cut(s) 545, 699, 776, 1060, 1062, 1556, 1599, 1854
MflI RGATCY 3 cut(s) 395, 1298, 1954
MhlI GDGCHC 1 cut(s) 448
MlsI TGGCCA 1 cut(s) 517
MluCI AATT 8 cut(s) 420, 468, 652, 745, 842, 1939, 2045, 2066
MluNI TGGCCA 1 cut(s) 517
MlyI GAGTC 7 cut(s) 352, 1328, 1638, 1807, 1901, 1985, 2161
MmeI TCCRAC 2 cut(s) 1852, 2114
Mox20I TGGCCA 1 cut(s) 517
MroXI GAANNNNTTC 1 cut(s) 2037
MscI TGGCCA 1 cut(s) 517
MseI TTAA 8 cut(s) 74, 293, 423, 839, 1416, 1773, 1938, 2256
MslI CAYNNNNRTG 4 cut(s) 980, 1194, 1338, 2076
Msp20I TGGCCA 1 cut(s) 517
MspA1I CMGCKG 5 cut(s) 302, 311, 1109, 1785, 1862
MspI CCGG 3 cut(s) 143, 348, 404
MspR9I CCNGG 6 cut(s) 144, 393, 474, 1041, 1158, 1650
Mva1269I GAATGC 4 cut(s) 211, 702, 1587, 1909
MvaI CCWGG 5 cut(s) 393, 474, 1041, 1158, 1650
NciI CCSGG 1 cut(s) 144
NheI GCTAGC 1 cut(s) 989
NlaIV GGNNCC 2 cut(s) 1201, 1956
NmuCI GTSAC 2 cut(s) 1445, 1893
NspI RCATGY 3 cut(s) 902, 997, 2149
PaeI GCATGC 1 cut(s) 902
PagI TCATGA 3 cut(s) 1333, 2041, 2242
PctI GAATGC 4 cut(s) 211, 702, 1587, 1909
PdmI GAANNNNTTC 1 cut(s) 2037
PfeI GAWTC 2 cut(s) 436, 1824
PflFI GACNNNGTC 1 cut(s) 1994
PflMI CCANNNNNTGG 2 cut(s) 268, 2131
PleI GAGTC 7 cut(s) 352, 1327, 1637, 1807, 1900, 1985, 2161
PpsI GAGTC 7 cut(s) 352, 1327, 1637, 1807, 1900, 1985, 2161
PshBI ATTAAT 2 cut(s) 423, 1938
Psp124BI GAGCTC 1 cut(s) 448
Psp6I CCWGG 5 cut(s) 391, 472, 1039, 1156, 1648
PspFI CCCAGC 3 cut(s) 585, 645, 1950
PspGI CCWGG 5 cut(s) 391, 472, 1039, 1156, 1648
PspN4I GGNNCC 2 cut(s) 1201, 1956
PspPI GGNCC 4 cut(s) 198, 259, 1076, 1112
PstI CTGCAG 3 cut(s) 307, 796, 1858
PstNI CAGNNNCTG 5 cut(s) 311, 388, 1079, 1632, 1862
PsuI RGATCY 3 cut(s) 395, 1298, 1954
PsyI GACNNNGTC 1 cut(s) 1994
PvuII CAGCTG 5 cut(s) 302, 311, 1109, 1785, 1862
RsaI GTAC 5 cut(s) 343, 1237, 1243, 1511, 1666
RsaNI GTAC 5 cut(s) 342, 1236, 1242, 1510, 1665
RseI CAYNNNNRTG 4 cut(s) 980, 1194, 1338, 2076
SacI GAGCTC 1 cut(s) 448
SaqAI TTAA 8 cut(s) 74, 293, 423, 839, 1416, 1773, 1938, 2256
Sau96I GGNCC 4 cut(s) 198, 259, 1076, 1112
SchI GAGTC 7 cut(s) 352, 1328, 1638, 1807, 1901, 1985, 2161
ScrFI CCNGG 6 cut(s) 144, 393, 474, 1041, 1158, 1650
SduI GDGCHC 1 cut(s) 448
SfcI CTRYAG 4 cut(s) 303, 792, 854, 1854
SinI GGWCC 2 cut(s) 198, 1112
SmiMI CAYNNNNRTG 4 cut(s) 980, 1194, 1338, 2076
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
SpeI ACTAGT 2 cut(s) 1439, 1475
SphI GCATGC 1 cut(s) 902
Sse9I AATT 8 cut(s) 420, 468, 652, 745, 842, 1939, 2045, 2066
SsiI CCGC 1 cut(s) 1482
SspI AATATT 1 cut(s) 291
SspMI CTAG 7 cut(s) 59, 195, 990, 1350, 1440, 1476, 2238
SstI GAGCTC 1 cut(s) 448
StyD4I CCNGG 6 cut(s) 142, 391, 472, 1039, 1156, 1648
TaaI ACNGT 2 cut(s) 1624, 2215
TaiI ACGT 1 cut(s) 1597
TaqI TCGA 8 cut(s) 237, 376, 712, 998, 1009, 1282, 1366, 1614
TaqII GACCGA 1 cut(s) 1984
TasI AATT 8 cut(s) 420, 468, 652, 745, 842, 1939, 2045, 2066
TauI GCSGC 1 cut(s) 1485
TfiI GAWTC 2 cut(s) 436, 1824
Tru1I TTAA 8 cut(s) 74, 293, 423, 839, 1416, 1773, 1938, 2256
Tru9I TTAA 8 cut(s) 74, 293, 423, 839, 1416, 1773, 1938, 2256
TscAI CASTG 6 cut(s) 679, 1068, 1272, 1519, 1695, 2109
TseFI GTSAC 2 cut(s) 1445, 1893
Tsp45I GTSAC 2 cut(s) 1445, 1893
TspGWI ACGGA 2 cut(s) 739, 1415
TspRI CASTG 6 cut(s) 679, 1068, 1272, 1519, 1695, 2109
Tth111I GACNNNGTC 1 cut(s) 1994
Van91I CCANNNNNTGG 2 cut(s) 268, 2131
VpaK11BI GGWCC 2 cut(s) 198, 1112
VspI ATTAAT 2 cut(s) 423, 1938
XagI CCTNNNNNAGG 1 cut(s) 1985
XapI RAATTY 4 cut(s) 468, 652, 745, 2066
XceI RCATGY 3 cut(s) 902, 997, 2149
XcmI CCANNNNNNNNNTGG 1 cut(s) 1835
XmnI GAANNNNTTC 1 cut(s) 2037
XspI CTAG 7 cut(s) 59, 195, 990, 1350, 1440, 1476, 2238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.