Rroxscaffold_7G00156310

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000670
Physical Location & Seq
Forward (+)
130772 .. 137732
6961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00156310.1

Sequence Viewer

Length: 2295 bp
ATGTCTCAGACTAACTGGGAAGCTGATAAAATGTTAGATGTCTATATCCATGATTATCTAGTGAAAAGAGACTTAAAGGCTTCTGCTCAAGCTTTCCAAGCTGAAGGGAAGGTGTCGTCTGATCCCGTTGCTATTGATGCACCGGGAGGTTTTCTATTCGAATGGTGGTCAGTTTTCTGGGATATATTTATTGCTAGGACGAATGAGAAGCATTCAGAGGTTGCTGCATCTTACATCGAGACTCAGTTCATTAAAGCAAGGGAGCAGCACCAGCAACAACAACAACAACAACAGCAGCAACAATCCCAGCAACCCCAACACTCGCAACAACAGCAGCAGCAGCAACAGCAACAGCAACACATGCAAATGCAGCAGATTATGATGCAAAGACATCAGCAGCAACAACAACAACAGCAACAACAGCAGCAACAGCAGCAACAACAACAGCAGCCACAGCAACAACAACAGCCACAGCAACAACAACAGCCACAACAGAGAAGAGATGGGGCCCATCTCTTAAATGGAAATACAAATGGGCTTGTTGGAAATGATCCTCTCATGCGACAAAATCCTGGAACAGCAAATGCTATGGCTACAAAGATGTACGAGGAAAGATTAAAACTCCCTCAGAGAGATTCTTTGGATGATGCATCTCTAAAGAGATTTGGTGAGAATGTGGGCCAGCTTTTGGATCAAAATCATGCTTCAATATTAAAGTCAGCTGCAGCAGCTGGTCAGCCTTCAGGGCAAGTTTTGCATGGTACAGCCGGTGGGATGACTCAACAAGTCCAAGCTCGAAATCAGCAACTGCCAGGATCTACGCCGGGTCTGGATCAACTTCGCTCTGGACTTCTTCAGCAACAAAAACCTTTTATACAAGCTCCCCAGCCCTATCATCAGCTTCAAATGCTGACACCACAACACCAGCAACTTATGCTTGCCCAGCAAAATTTGACATCCCCATCTGCCAGTGATGATAGTAGAAGACTAAGAATGCTATTGAATAATCGAAGTATGGGGCTTGGAAAGGATGGCCTTTCAAATTCCGTTGGCGATGTAGTGCCAAATGTAGGATCACCTCTTCAAGCTGCAGGCTCTATGATGCCTCGTGGAGATACAGATATGCTGATGAAGTTAAAATTGGCTCAACTACAGCAACAGCAGAATAGTAATCCACAACAACAGCTTCAGCAGCATGCTCTTTCTGCTCAGCAGTTGCAAAGTTCAAATCATAATCCTCATCAGCAGGATAAAATGGGGGTGCTGGCAGCATCACAATGGATGCTAGCATGTCGAACTCTTTTCGAGGAAACGATCAGGTCTGTCCTTTTGGTCGCAAAAAACCAGCCTGGGAGGAAGAGAAAGCAGCCAGTGTCATCTTCAGGCCCTGCCAATAGCACGGGAACAGCAAACACAGCTGGACCTTCCCCGAGTTCAGCCCCTTCCACTCCTTCAACCCACACTCCTGGTGATGTAATATCAATGCCTGCCTTACCCCATAGTGGTGGTTCCTCTAAGCCTCTGATGATGTTTGGTGCTGATGGTACTGGTACGCTCACCTCACCCTCAAATCCACTGTGGGATGATAAAGATCTTGAATTGCAGGCTGATATGGATCGATTTGTGGAGGATGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCTCATGATGATGCAGACCCTAGAGATGCTGTTGGTCGAGGTATGGATGTCAGCAAAGGTACAGCTGTATTATGGTACACTGATACTCTGAAGTCAAAATCTACACTTGAAGAACATTCAGCTTTGATAACTGATGTTCGGTTCAGTCCGAGCATTCCACGTCTTGCAACATCTTCATTCGACAAAACTGTCAGAGTCTGGGATGCTGATAATCCTGGTTATTCACTTCGTACATTCATGGGACATACTGCATCAGTGATGTCAGTAGATTTCCACCCGAACAAGGATGACCTTATATGTTCTTGTGATGGGGATGGTGAGATACGCTACTGGAGTATTAACAATGGCAGCTGTGCAAGAGTGTTCAAGGGTGGGACGACTCAGGTGAGATTCCAACCTCGTCTTGGAAGATATCTTGCTGCAGCAGCTGAGAATGTTGTATCTATACTGGATGTGGAGTCACAGGCTTGTCGGCATTCATTACAGTCTTTGGAGCTATGGAACATGCAAGAGAACAAGACAATGACTCTATCAGCACATGAAGGTCTTATTGCTTCGTTGGCTGTGTCAACCGTAACGGGTTTGGTTGCTTCAGCTAGTCATGATAAGTGGGTTAAGCTCTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

764

Amino Acids

84.69

Weight (kDa)

6.37

Isoelectric Point (pI)

55.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 10 - 36 1.5e-06 LisH
Beta-prop_EML_2 PF23414 572 - 672 2.1e-10 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 573 - 684 5.8e-15 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 575 - 763 3.7e-20 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 577 - 674 9.3e-10 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 577 - 715 9.6e-22 WDR5 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 583 - 683 2.2e-07 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 584 - 763 1.7e-16 CDC20/Fizzy WD40 domain
WD40_MABP1-WDR62_2nd PF24782 585 - 712 7.3e-06 MABP1/WDR62 second WD40 domain
WD40 PF00400 587 - 623 1.5e-07 WD domain, G-beta repeat
WD40_Gbeta PF25391 589 - 683 1.2e-07 G protein beta WD-40 repeat protein
EIF3I PF24805 591 - 685 6.4e-08 EIF3I
Beta-prop_THOC3 PF25174 594 - 715 9.7e-21 THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 608 - 713 6.6e-07 WDR90/POC16, second beta-propeller
WD40 PF00400 629 - 667 2.3e-06 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 631 - 718 4.9e-09 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 631 - 717 2.3e-06 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1853
AccB7I CCANNNNNTGG 1 cut(s) 688
AclWI GGATC 8 cut(s) 116, 545, 699, 823, 840, 1081, 1623, 1642
AcsI RAATTY 2 cut(s) 949, 1042
AcuI CTGAAG 7 cut(s) 123, 726, 839, 1172, 1365, 1775, 2241
AfaI GTAC 7 cut(s) 605, 763, 1546, 1552, 1726, 1742, 1897
AfiI CCNNNNNNNGG 5 cut(s) 688, 1070, 1502, 1948, 2069
AjiI CACGTC 1 cut(s) 1826
AjnI CCWGG 5 cut(s) 571, 811, 1348, 1465, 1879
AjuI GAANNNNNNNTTGG 2 cut(s) 1124, 1156
Alw26I GTCTC 3 cut(s) 9, 63, 233
AlwI GGATC 8 cut(s) 116, 545, 699, 823, 840, 1081, 1623, 1642
AlwNI CAGNNNCTG 5 cut(s) 731, 808, 1388, 1863, 2093
Ama87I CYCGRG 1 cut(s) 1429
AoxI GGCC 4 cut(s) 507, 679, 1033, 1384
ApaI GGGCCC 1 cut(s) 511
ApoI RAATTY 2 cut(s) 949, 1042
AspS9I GGNCC 5 cut(s) 507, 508, 679, 1385, 1421
AsuC2I CCSGG 2 cut(s) 144, 825
AsuHPI GGTGA 7 cut(s) 680, 1068, 1481, 1549, 1554, 1994, 2062
AsuII TTCGAA 1 cut(s) 159
AsuNHI GCTAGC 1 cut(s) 1285
AvaI CYCGRG 1 cut(s) 1429
AvaII GGWCC 1 cut(s) 1421
BaeGI GKGCMC 1 cut(s) 511
BaeI ACNNNNGTAYC 2 cut(s) 1716, 1749
BanII GRGCYC 1 cut(s) 511
BauI CACGAG 1 cut(s) 1107
BbsI GAAGAC 1 cut(s) 991
BccI CCATC 8 cut(s) 497, 519, 970, 1025, 1535, 1625, 1967, 1973
BciT130I CCWGG 5 cut(s) 573, 813, 1350, 1467, 1881
BcnI CCSGG 2 cut(s) 144, 825
BcoDI GTCTC 3 cut(s) 9, 63, 233
BfaI CTAG 5 cut(s) 59, 195, 1286, 1686, 2262
BfmI CTRYAG 4 cut(s) 723, 1089, 1151, 2085
BglI GCCNNNNNGGC 1 cut(s) 745
BglII AGATCT 1 cut(s) 1591
BlpI GCTNAGC 1 cut(s) 1209
Bme1390I CCNGG 7 cut(s) 144, 573, 813, 825, 1350, 1467, 1881
Bme18I GGWCC 1 cut(s) 1421
BmeT110I CYCGRG 1 cut(s) 1429
BmgBI CACGTC 1 cut(s) 1826
BmgT120I GGNCC 5 cut(s) 507, 508, 679, 1385, 1421
BmiI GGNNCC 3 cut(s) 508, 509, 1510
BmrFI CCNGG 7 cut(s) 144, 573, 813, 825, 1350, 1467, 1881
BmrI ACTGGG 1 cut(s) 25
BmtI GCTAGC 1 cut(s) 1289
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 991
BpmI CTGGAG 1 cut(s) 2017
Bpu1102I GCTNAGC 1 cut(s) 1209
Bpu14I TTCGAA 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 2 cut(s) 144, 825
Bsa29I ATCGAT 1 cut(s) 1618
BsaBI GATNNNNATC 3 cut(s) 696, 1590, 1614
BsaJI CCNNGG 1 cut(s) 1349
BsaXI ACNNNNNCTCC 2 cut(s) 1447, 1477
Bsc4I CCNNNNNNNGG 5 cut(s) 688, 1070, 1502, 1948, 2069
Bse118I RCCGGY 1 cut(s) 767
Bse1I ACTGG 6 cut(s) 20, 969, 1370, 1552, 2000, 2118
Bse8I GATNNNNATC 3 cut(s) 696, 1590, 1614
BseBI CCWGG 5 cut(s) 573, 813, 1350, 1467, 1881
BseCI ATCGAT 1 cut(s) 1618
BseDI CCNNGG 1 cut(s) 1349
BseJI GATNNNNATC 3 cut(s) 696, 1590, 1614
BseLI CCNNNNNNNGG 5 cut(s) 688, 1070, 1502, 1948, 2069
BseMII CTCAG 6 cut(s) 20, 257, 641, 1223, 2060, 2085
BseNI ACTGG 6 cut(s) 20, 969, 1370, 1552, 2000, 2118
BseSI GKGCMC 1 cut(s) 511
BseYI CCCAGC 3 cut(s) 306, 885, 942
BshFI GGCC 4 cut(s) 509, 681, 1035, 1386
BshVI ATCGAT 1 cut(s) 1618
BsiHKCI CYCGRG 1 cut(s) 1429
BsiSI CCGG 3 cut(s) 143, 768, 824
BslFI GGGAC 2 cut(s) 1920, 2053
BslI CCNNNNNNNGG 5 cut(s) 688, 1070, 1502, 1948, 2069
BsmAI GTCTC 3 cut(s) 9, 63, 233
BsmFI GGGAC 2 cut(s) 1920, 2053
BsmI GAATGC 4 cut(s) 211, 999, 1818, 2140
BsnI GGCC 4 cut(s) 509, 681, 1035, 1386
BsoBI CYCGRG 1 cut(s) 1429
Bsp119I TTCGAA 1 cut(s) 159
Bsp120I GGGCCC 1 cut(s) 507
Bsp1286I GDGCHC 1 cut(s) 511
Bsp1720I GCTNAGC 1 cut(s) 1209
BspANI GGCC 4 cut(s) 509, 681, 1035, 1386
BspCNI CTCAG 6 cut(s) 19, 256, 640, 1222, 2059, 2086
BspDI ATCGAT 1 cut(s) 1618
BspHI TCATGA 2 cut(s) 1669, 2266
BspLI GGNNCC 3 cut(s) 508, 509, 1510
BspMAI CTGCAG 3 cut(s) 727, 1093, 2089
BspOI GCTAGC 1 cut(s) 1289
BspPI GGATC 8 cut(s) 116, 545, 699, 823, 840, 1081, 1623, 1642
BspT104I TTCGAA 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 767
BsrI ACTGG 6 cut(s) 20, 969, 1370, 1552, 2000, 2118
BssAI RCCGGY 1 cut(s) 767
BssECI CCNNGG 1 cut(s) 1349
BssSI CACGAG 1 cut(s) 1107
Bst2BI CACGAG 1 cut(s) 1107
Bst2UI CCWGG 5 cut(s) 573, 813, 1350, 1467, 1881
Bst4CI ACNGT 4 cut(s) 1578, 1855, 2151, 2239
Bst6I CTCTTC 3 cut(s) 493, 1086, 1352
BstAPI GCANNNNNTGC 3 cut(s) 361, 754, 934
BstBI TTCGAA 1 cut(s) 159
BstC8I GCNNGC 8 cut(s) 683, 939, 1093, 1197, 1266, 1287, 1488, 1605
BstDEI CTNAG 8 cut(s) 6, 243, 627, 989, 1209, 1515, 2046, 2094
BstMAI GTCTC 3 cut(s) 9, 63, 233
BstNI CCWGG 5 cut(s) 573, 813, 1350, 1467, 1881
BstNSI RCATGY 4 cut(s) 364, 1199, 1293, 2173
BstSCI CCNGG 7 cut(s) 142, 571, 811, 823, 1348, 1465, 1879
BstSFI CTRYAG 4 cut(s) 723, 1089, 1151, 2085
BstSLI GKGCMC 1 cut(s) 511
BstV2I GAAGAC 1 cut(s) 991
BstX2I RGATCY 3 cut(s) 815, 1591, 1634
BstXI CCANNNNNNTGG 2 cut(s) 1466, 1505
BstYI RGATCY 3 cut(s) 815, 1591, 1634
Bsu15I ATCGAT 1 cut(s) 1618
BsuRI GGCC 4 cut(s) 509, 681, 1035, 1386
BsuTUI ATCGAT 1 cut(s) 1618
BtgZI GCGATG 1 cut(s) 1068
BtrI CACGTC 1 cut(s) 1826
BtsIMutI CAGTG 5 cut(s) 976, 1377, 1574, 1743, 1926
Cac8I GCNNGC 8 cut(s) 683, 939, 1093, 1197, 1266, 1287, 1488, 1605
CaiI CAGNNNCTG 5 cut(s) 731, 808, 1388, 1863, 2093
CciI TCATGA 2 cut(s) 1669, 2266
Cfr10I RCCGGY 1 cut(s) 767
Cfr13I GGNCC 5 cut(s) 507, 508, 679, 1385, 1421
ClaI ATCGAT 1 cut(s) 1618
Csp6I GTAC 7 cut(s) 604, 762, 1545, 1551, 1725, 1741, 1896
CviQI GTAC 7 cut(s) 604, 762, 1545, 1551, 1725, 1741, 1896
DdeI CTNAG 8 cut(s) 6, 243, 627, 989, 1209, 1515, 2046, 2094
DrdI GACNNNNNNGTC 1 cut(s) 1853
DseDI GACNNNNNNGTC 1 cut(s) 1853
Eam1104I CTCTTC 3 cut(s) 493, 1086, 1352
EarI CTCTTC 3 cut(s) 493, 1086, 1352
Eco24I GRGCYC 1 cut(s) 511
Eco32I GATATC 1 cut(s) 2078
Eco47I GGWCC 1 cut(s) 1421
Eco57I CTGAAG 7 cut(s) 123, 726, 839, 1172, 1365, 1775, 2241
Eco88I CYCGRG 1 cut(s) 1429
EcoO109I RGGNCCY 2 cut(s) 507, 1385
EcoRII CCWGG 5 cut(s) 571, 811, 1348, 1465, 1879
EcoRV GATATC 1 cut(s) 2078
EcoT22I ATGCAT 1 cut(s) 652
EcoT38I GRGCYC 1 cut(s) 511
FaqI GGGAC 2 cut(s) 1920, 2053
FriOI GRGCYC 1 cut(s) 511
FspBI CTAG 5 cut(s) 59, 195, 1286, 1686, 2262
GsaI CCCAGC 3 cut(s) 310, 889, 946
GsuI CTGGAG 1 cut(s) 2017
HaeIII GGCC 4 cut(s) 509, 681, 1035, 1386
HapII CCGG 3 cut(s) 143, 768, 824
HincII GTYRAC 1 cut(s) 2235
HindII GTYRAC 1 cut(s) 2235
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 9 cut(s) 241, 635, 778, 1655, 1860, 2044, 2055, 2123, 2191
HpaII CCGG 3 cut(s) 143, 768, 824
HphI GGTGA 7 cut(s) 680, 1068, 1481, 1549, 1554, 1994, 2062
Hpy166II GTNNAC 2 cut(s) 1743, 2235
Hpy188I TCNGA 8 cut(s) 9, 121, 217, 630, 1524, 1755, 1815, 1859
Hpy188III TCNNGA 8 cut(s) 238, 830, 846, 1595, 1640, 1670, 2267, 2287
Hpy8I GTNNAC 2 cut(s) 1743, 2235
HpyAV CCTTC 7 cut(s) 98, 103, 750, 1434, 1452, 1461, 2201
HpyCH4III ACNGT 4 cut(s) 1578, 1855, 2151, 2239
HpyCH4IV ACGT 1 cut(s) 1825
HpyF3I CTNAG 8 cut(s) 6, 243, 627, 989, 1209, 1515, 2046, 2094
HpySE526I ACGT 1 cut(s) 1825
LmnI GCTCC 3 cut(s) 262, 886, 2158
MaeI CTAG 5 cut(s) 59, 195, 1286, 1686, 2262
MaeII ACGT 1 cut(s) 1825
MaeIII GTNAC 2 cut(s) 2124, 2239
MboII GAAGA 9 cut(s) 510, 845, 996, 1073, 1369, 1371, 1787, 1830, 2085
MflI RGATCY 3 cut(s) 815, 1591, 1634
MhlI GDGCHC 1 cut(s) 511
MluCI AATT 4 cut(s) 949, 1042, 1139, 1598
MlyI GAGTC 7 cut(s) 235, 772, 1664, 1869, 2038, 2132, 2185
MmeI TCCRAC 2 cut(s) 523, 2083
Mph1103I ATGCAT 1 cut(s) 652
MseI TTAA 8 cut(s) 74, 252, 518, 617, 713, 1136, 2004, 2280
MslI CAYNNNNRTG 4 cut(s) 365, 1276, 1503, 1674
MspA1I CMGCKG 6 cut(s) 722, 731, 1418, 1730, 2016, 2093
MspI CCGG 3 cut(s) 143, 768, 824
MspR9I CCNGG 7 cut(s) 144, 573, 813, 825, 1350, 1467, 1881
Mva1269I GAATGC 4 cut(s) 211, 999, 1818, 2140
MvaI CCWGG 5 cut(s) 573, 813, 1350, 1467, 1881
NciI CCSGG 2 cut(s) 144, 825
NheI GCTAGC 1 cut(s) 1285
NlaIV GGNNCC 3 cut(s) 508, 509, 1510
NmuCI GTSAC 1 cut(s) 2124
NsiI ATGCAT 1 cut(s) 652
NspI RCATGY 4 cut(s) 364, 1199, 1293, 2173
NspV TTCGAA 1 cut(s) 159
PaeI GCATGC 1 cut(s) 1199
PagI TCATGA 2 cut(s) 1669, 2266
PctI GAATGC 4 cut(s) 211, 999, 1818, 2140
PfeI GAWTC 2 cut(s) 635, 2055
PflMI CCANNNNNTGG 1 cut(s) 688
PfoI TCCNGGA 1 cut(s) 571
PleI GAGTC 7 cut(s) 235, 772, 1663, 1868, 2038, 2131, 2185
PpsI GAGTC 7 cut(s) 235, 772, 1663, 1868, 2038, 2131, 2185
Psp6I CCWGG 5 cut(s) 571, 811, 1348, 1465, 1879
PspFI CCCAGC 3 cut(s) 306, 885, 942
PspGI CCWGG 5 cut(s) 571, 811, 1348, 1465, 1879
PspN4I GGNNCC 3 cut(s) 508, 509, 1510
PspOMI GGGCCC 1 cut(s) 507
PspPI GGNCC 5 cut(s) 507, 508, 679, 1385, 1421
PstI CTGCAG 3 cut(s) 727, 1093, 2089
PstNI CAGNNNCTG 5 cut(s) 731, 808, 1388, 1863, 2093
PsuI RGATCY 3 cut(s) 815, 1591, 1634
PvuII CAGCTG 6 cut(s) 722, 731, 1418, 1730, 2016, 2093
RsaI GTAC 7 cut(s) 605, 763, 1546, 1552, 1726, 1742, 1897
RsaNI GTAC 7 cut(s) 604, 762, 1545, 1551, 1725, 1741, 1896
RseI CAYNNNNRTG 4 cut(s) 365, 1276, 1503, 1674
SaqAI TTAA 8 cut(s) 74, 252, 518, 617, 713, 1136, 2004, 2280
Sau96I GGNCC 5 cut(s) 507, 508, 679, 1385, 1421
SchI GAGTC 7 cut(s) 235, 772, 1664, 1869, 2038, 2132, 2185
ScrFI CCNGG 7 cut(s) 144, 573, 813, 825, 1350, 1467, 1881
SduI GDGCHC 1 cut(s) 511
SfcI CTRYAG 4 cut(s) 723, 1089, 1151, 2085
SfuI TTCGAA 1 cut(s) 159
SinI GGWCC 1 cut(s) 1421
SmiMI CAYNNNNRTG 4 cut(s) 365, 1276, 1503, 1674
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
SphI GCATGC 1 cut(s) 1199
Sse9I AATT 4 cut(s) 949, 1042, 1139, 1598
SspI AATATT 1 cut(s) 711
SspMI CTAG 5 cut(s) 59, 195, 1286, 1686, 2262
StyD4I CCNGG 7 cut(s) 142, 571, 811, 823, 1348, 1465, 1879
TaaI ACNGT 4 cut(s) 1578, 1855, 2151, 2239
TaiI ACGT 1 cut(s) 1828
TaqI TCGA 9 cut(s) 159, 237, 796, 1009, 1294, 1305, 1618, 1702, 1845
TasI AATT 4 cut(s) 949, 1042, 1139, 1598
TfiI GAWTC 2 cut(s) 635, 2055
Tru1I TTAA 8 cut(s) 74, 252, 518, 617, 713, 1136, 2004, 2280
Tru9I TTAA 8 cut(s) 74, 252, 518, 617, 713, 1136, 2004, 2280
TscAI CASTG 5 cut(s) 976, 1377, 1581, 1750, 1926
TseFI GTSAC 1 cut(s) 2124
Tsp45I GTSAC 1 cut(s) 2124
TspDTI ATGAA 6 cut(s) 238, 1145, 1830, 1891, 2133, 2220
TspGWI ACGGA 1 cut(s) 1036
TspRI CASTG 5 cut(s) 976, 1377, 1581, 1750, 1926
Van91I CCANNNNNTGG 1 cut(s) 688
VpaK11BI GGWCC 1 cut(s) 1421
XapI RAATTY 2 cut(s) 949, 1042
XceI RCATGY 4 cut(s) 364, 1199, 1293, 2173
XcmI CCANNNNNNNNNTGG 2 cut(s) 518, 2066
XspI CTAG 5 cut(s) 59, 195, 1286, 1686, 2262
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.