RLG00000010283

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000670
Physical Location & Seq
Forward (+)
148452 .. 154648
6197 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010283

Sequence Viewer

Length: 2709 bp
ATGTCTCAGACTAACTGGGAAGCTGATAAAATGTTAGATGTCTATATCCATGATTATCTAGTGAAAAGAGACTTAAAGGCTTCTGCTCAAGCTTTCCAAGCGGAAGGGAAGGTGTCGTCTGATCCCGTTGCTATTGATGCACCGGGAGGTTTTCTATTTGAATGGTGGTCAGTTTTCTGGGATATATTTATTGCTAGGACCAATGAGAAGCATTCAGAGGTTGCTGCATCTTACATCGAGACACAGTTCATTAAAGCAAGGGAGCAGCACCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAACAATCCCAGCAACCCCAACACTCACAACAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACACATGCAAATGCAGCAGATTCTGATGCAAAGACATCAGCAGCAACAACAACAGCAACAACAGCAGCAACAGCAGCAACAACAACAGCAGCCACAGCAACAACAACAGCCACAGCAACAACAGCAGCCACAACAGAGAAGAGATGGGGCCCATCTCTTAAATGGAAATACAAATGGGCTTGTTGGAAATGATCCTCTCATGCGACAAAATCCTGGAACAGCAAATGCTATGGCTACAAAGATGTACGAGGAAAGATTAAAACTCCCTCAGAGAGATTCTTTGGATGATGCATCTCTAAAGAGATTTGGTGAGAATGTGGGCCAGCTTTTGGATCAAAATCATGCTTCAATATTAAAGTCAGCTGCAGCAGCTGGTCAGCCTTCAGGGCAAGTTTTGCATGGTACAGCCGGTGGGATGACTCAACAAGTCCAAGCTCGAAATCAGCAACTGCCAGGATCTACGCCGGATATAAAGACAGAAATTAATCCTGTATTGAATCCAAGAGCTCCCGAGGGATCATTGATGGGAATTCCAGGTTCTAATCAGGGTGGTAACAATCTGACTTTGAAAGGATGGCCACTCACAGGTCTGGATCAACTTCGCTCTGGACTTCTTCAGCAACAAAAACCTTTTATACAAGCTCCCCAGCCCTTTCATCAGCTTCAAATGCTGACACCACAACACCAGCAACAACTTATGCTTGCCCAGCAAAATTTGACATCCCCATCTGCCAGTGATGATAGTAGAAGACTAAGAATGCTATTGAATAATCGAAGTATGGGCCTTGGAAAGGATGGCCTTTCAAATTCCGTTGGCGATGTAGTGCCAAATGTAGGATCACCTCTTCAAGCTGCAGGCTCTATGATGCCTCGTGGAGATACAGATATGCTGATGAAGTTAAAATTGGCTCAACTACAGCAACAGCAGAATAGTAATCCACAACAACAGCTTCAGCAGCATGCTCTTTCTGCTCAGCAGTTGCAAAGTTCAAATCATAATCCTCATCAGCAAGATAAAATGGGGGGTGCTGGCAGCATCACAATGGATGCTAGCATGTCGAACTCTTTTCGAGGAAATGATCAGGTCTCAAAAAACCAGCCTGGGAGGAAGAGAAAGCAGCCAGTGTCATCTTCAGGCCCTGCCAATAGCACGGGAACAGCAAACACAGCTGGACCTTCCCCGAGTTCAGCCCCTTCCACTCCTTCAACCCACACTCCTGGTGATGTAATATCAATGCCTGCCTTACCCCATAGTGGTGGTTCCTCTAAGCCTCTGATGATGTTTGGTGCTGATGGTACTGGTACGCTCACCTCACCCTCAAATCCACTGGCTGATATGGATCGATTTGTGGAGGATGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCTCATGATGATGCAGACCCTAGAGATGCTGTTGGTCGAGGTATGGATGTCAGCAAAGGGTTCACATTTACGGAAGTAAACTCTGTTAAAGCAAGCCCAAGCAAAGTTACTAGTTGTCACTTCTCATCGGATGGAAAACTTCTTACTAGTGGCGGCCATGATAAAAAGGCTGTATTATGGTACACTGATACTCTGAAGTCAAAATCTACACTTGAAGAACATTCAGCTTTGATAACTGATGTTCGGTTCAGTCCGAGCATTCCACGTCTTGCAACATCTTCATTCGACAAAACTGTCAGAGTCTGGGATGCTGATAATCCTGGTTATTCACTTCGTACATTCATGGGACATACTGCATCAGTGATGTCAGTAGATTTCCACCCGAACAAGGACGACCTTATATGTTCTTGTGATGGGGATGGTGAGATACGCTACTGGAGTATTAACAATGGCAGCTGTGCAAGAGTGTTCAAGGGCGGGACGACTCAGGTGAGATTCCAACCTCGTCTTGGAAGATATCTTGCTGTAGCAGCTGAGAATGTTGTATCTATACTGGATGTGGAGTCACAGGCTTGTCGGCATTCATTACAGGGACATACAAAGCCTATTAATTCTGTGTGCTGGGATCCTTCTGGTGAGTTCCTTGCATCCCTGAGTGAGGACTCGGTCAGAGTTTGGACTTTCGGATCAGGAAATGAAGGGGAATGTGTTCATGACTTGAGCTGTAATGGCAATAAATTTCATTCCTGTGTTTTCCATCCAACATATACTTCACTGCTGGTCATTGGTTGTTACCAGTCTTTGGAGCTATGGAACATGCAAGAGAACAAGACAATGACTCTATCAGCACATGAAGGTCTTATTGCTTCGTTGGCTGTGTCAACCGTAACGGGTTTGGTTGCTTCGGCTAGTCATGATAAGTTGGTTAAGCTCTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

903

Amino Acids

99.11

Weight (kDa)

6.49

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 10 - 36 1.8e-06 LisH
Beta-prop_THOC3 PF25174 611 - 674 1.6e-07 THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 611 - 815 2.2e-12 MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd PF25172 615 - 816 2.1e-17 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 620 - 815 1.2e-29 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 621 - 737 2.4e-20 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 621 - 741 1.7e-14 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 621 - 750 1e-26 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 622 - 722 3e-06 WDR36/Utp21 second beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 623 - 695 2.1e-06 CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st PF24817 623 - 695 6e-09 WDHD1 first WD40 domain
EIF3I PF24805 624 - 694 1.9e-06 EIF3I
WD40_Gbeta PF25391 624 - 901 5.2e-17 G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd PF25047 652 - 751 4.4e-07 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 653 - 746 5.6e-12 CDC20/Fizzy WD40 domain
WD40 PF00400 656 - 692 1.9e-07 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 663 - 902 2.6e-38 THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 677 - 742 1e-05 WDR90/POC16, second beta-propeller
WD40 PF00400 698 - 736 2.9e-06 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 700 - 777 8.2e-09 WDHD1 first WD40 domain
WDR55 PF24796 707 - 872 6.5e-07 WDR55
Beta-prop_WDR3_1st PF25173 727 - 861 7.5e-14 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 728 - 821 1.7e-06 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5 PF25175 749 - 901 7.6e-25 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 751 - 828 1.8e-09 WDHD1 first WD40 domain
WD40_Prp19 PF24814 751 - 901 9.5e-17 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 761 - 895 1.7e-07 WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz PF24807 762 - 901 9.5e-09 CDC20/Fizzy WD40 domain
Beta-prop_EIPR1 PF23609 764 - 872 3.2e-06 EIPR1 beta-propeller
WD40 PF00400 781 - 815 1.7e-07 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 811 - 901 6e-06 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2060
AccB7I CCANNNNNTGG 2 cut(s) 706, 2569
AciI CCGC 3 cut(s) 101, 1920, 2244
AcoI YGGCCR 2 cut(s) 953, 1921
AcsI RAATTY 4 cut(s) 906, 1090, 1183, 2504
AcuI CTGAAG 5 cut(s) 744, 977, 1313, 1494, 1982
AfaI GTAC 6 cut(s) 623, 781, 1675, 1681, 1949, 2104
AfiI CCNNNNNNNGG 9 cut(s) 706, 962, 1168, 1211, 1631, 2155, 2276, 2425, 2569
AhlI ACTAGT 2 cut(s) 1877, 1913
AjiI CACGTC 1 cut(s) 2033
AjnI CCWGG 6 cut(s) 589, 829, 910, 1477, 1594, 2086
AjuI GAANNNNNNNTTGG 4 cut(s) 1265, 1297, 2521, 2553
Alw21I GWGCWC 1 cut(s) 886
Alw26I GTCTC 4 cut(s) 9, 63, 233, 1468
AlwNI CAGNNNCTG 5 cut(s) 400, 749, 826, 1517, 2070
Ama87I CYCGRG 2 cut(s) 887, 1558
AoxI GGCC 7 cut(s) 525, 697, 953, 1159, 1174, 1513, 1921
ApaI GGGCCC 1 cut(s) 529
ApoI RAATTY 4 cut(s) 906, 1090, 1183, 2504
AseI ATTAAT 2 cut(s) 861, 2376
Asp700I GAANNNNTTC 1 cut(s) 2475
AspS9I GGNCC 7 cut(s) 198, 525, 526, 697, 1159, 1514, 1550
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 8 cut(s) 698, 1209, 1610, 1678, 1683, 2201, 2269, 2414
AsuNHI GCTAGC 1 cut(s) 1427
AvaI CYCGRG 2 cut(s) 887, 1558
AvaII GGWCC 2 cut(s) 198, 1550
BaeGI GKGCMC 1 cut(s) 529
BalI TGGCCA 1 cut(s) 955
BamHI GGATCC 1 cut(s) 2392
BanII GRGCYC 2 cut(s) 529, 886
BauI CACGAG 1 cut(s) 1248
BbsI GAAGAC 1 cut(s) 1132
Bbv12I GWGCWC 1 cut(s) 886
BciT130I CCWGG 6 cut(s) 591, 831, 912, 1479, 1596, 2088
BclI TGATCA 1 cut(s) 1456
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 4 cut(s) 9, 63, 233, 1468
BcuI ACTAGT 2 cut(s) 1877, 1913
BfaI CTAG 7 cut(s) 59, 195, 1428, 1788, 1878, 1914, 2676
BfmI CTRYAG 4 cut(s) 741, 1230, 1292, 2292
BglI GCCNNNNNGGC 1 cut(s) 763
BlpI GCTNAGC 1 cut(s) 1350
Bme1390I CCNGG 7 cut(s) 144, 591, 831, 912, 1479, 1596, 2088
Bme18I GGWCC 2 cut(s) 198, 1550
BmeT110I CYCGRG 2 cut(s) 887, 1558
BmgBI CACGTC 1 cut(s) 2033
BmgT120I GGNCC 7 cut(s) 198, 525, 526, 697, 1159, 1514, 1550
BmiI GGNNCC 4 cut(s) 526, 527, 1639, 2394
BmrFI CCNGG 7 cut(s) 144, 591, 831, 912, 1479, 1596, 2088
BmrI ACTGGG 1 cut(s) 25
BmtI GCTAGC 1 cut(s) 1431
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 1132
BpmI CTGGAG 1 cut(s) 2224
Bpu1102I GCTNAGC 1 cut(s) 1350
BpuEI CTTGAG 2 cut(s) 72, 2506
BpuMI CCSGG 1 cut(s) 144
Bsa29I ATCGAT 1 cut(s) 1720
BsaBI GATNNNNATC 2 cut(s) 714, 1716
BsaI GGTCTC 1 cut(s) 1468
BsaJI CCNNGG 3 cut(s) 888, 1162, 1478
BsaXI ACNNNNNCTCC 2 cut(s) 1576, 1606
Bsc4I CCNNNNNNNGG 9 cut(s) 706, 962, 1168, 1211, 1631, 2155, 2276, 2425, 2569
Bse118I RCCGGY 1 cut(s) 785
Bse1I ACTGG 8 cut(s) 20, 1110, 1499, 1681, 1710, 2207, 2325, 2563
Bse8I GATNNNNATC 2 cut(s) 714, 1716
BseBI CCWGG 6 cut(s) 591, 831, 912, 1479, 1596, 2088
BseCI ATCGAT 1 cut(s) 1720
BseDI CCNNGG 3 cut(s) 888, 1162, 1478
BseJI GATNNNNATC 2 cut(s) 714, 1716
BseLI CCNNNNNNNGG 9 cut(s) 706, 962, 1168, 1211, 1631, 2155, 2276, 2425, 2569
BseMII CTCAG 6 cut(s) 20, 659, 1364, 2267, 2292, 2411
BseNI ACTGG 8 cut(s) 20, 1110, 1499, 1681, 1710, 2207, 2325, 2563
BseSI GKGCMC 1 cut(s) 529
BseYI CCCAGC 4 cut(s) 324, 1023, 1083, 2388
BshFI GGCC 7 cut(s) 527, 699, 955, 1161, 1176, 1515, 1923
BshVI ATCGAT 1 cut(s) 1720
BsiHKAI GWGCWC 1 cut(s) 886
BsiHKCI CYCGRG 2 cut(s) 887, 1558
BsiSI CCGG 3 cut(s) 143, 786, 842
BslFI GGGAC 3 cut(s) 2127, 2260, 2373
BslI CCNNNNNNNGG 9 cut(s) 706, 962, 1168, 1211, 1631, 2155, 2276, 2425, 2569
BsmAI GTCTC 4 cut(s) 9, 63, 233, 1468
BsmFI GGGAC 3 cut(s) 2127, 2260, 2373
BsmI GAATGC 4 cut(s) 211, 1140, 2025, 2347
BsnI GGCC 7 cut(s) 527, 699, 955, 1161, 1176, 1515, 1923
Bso31I GGTCTC 1 cut(s) 1468
BsoBI CYCGRG 2 cut(s) 887, 1558
Bsp120I GGGCCC 1 cut(s) 525
Bsp1286I GDGCHC 2 cut(s) 529, 886
Bsp1720I GCTNAGC 1 cut(s) 1350
BspACI CCGC 3 cut(s) 101, 1920, 2244
BspANI GGCC 7 cut(s) 527, 699, 955, 1161, 1176, 1515, 1923
BspCNI CTCAG 6 cut(s) 19, 658, 1363, 2266, 2293, 2412
BspDI ATCGAT 1 cut(s) 1720
BspHI TCATGA 3 cut(s) 1771, 2479, 2680
BspLI GGNNCC 4 cut(s) 526, 527, 1639, 2394
BspMAI CTGCAG 2 cut(s) 745, 1234
BspOI GCTAGC 1 cut(s) 1431
BspTNI GGTCTC 1 cut(s) 1468
BsrFI RCCGGY 1 cut(s) 785
BsrI ACTGG 8 cut(s) 20, 1110, 1499, 1681, 1710, 2207, 2325, 2563
BssAI RCCGGY 1 cut(s) 785
BssECI CCNNGG 3 cut(s) 888, 1162, 1478
BssSI CACGAG 1 cut(s) 1248
BssT1I CCWWGG 1 cut(s) 1162
Bst2BI CACGAG 1 cut(s) 1248
Bst2UI CCWGG 6 cut(s) 591, 831, 912, 1479, 1596, 2088
Bst4CI ACNGT 3 cut(s) 246, 2062, 2653
Bst6I CTCTTC 3 cut(s) 511, 1227, 1481
BstAPI GCANNNNNTGC 2 cut(s) 382, 772
BstC8I GCNNGC 8 cut(s) 701, 1080, 1234, 1338, 1408, 1429, 1617, 1861
BstDEI CTNAG 8 cut(s) 6, 645, 1130, 1350, 1644, 2253, 2301, 2420
BstENI CCTNNNNNAGG 2 cut(s) 1166, 2423
BstMAI GTCTC 4 cut(s) 9, 63, 233, 1468
BstNI CCWGG 6 cut(s) 591, 831, 912, 1479, 1596, 2088
BstNSI RCATGY 4 cut(s) 385, 1340, 1435, 2587
BstSCI CCNGG 7 cut(s) 142, 589, 829, 910, 1477, 1594, 2086
BstSFI CTRYAG 4 cut(s) 741, 1230, 1292, 2292
BstSLI GKGCMC 1 cut(s) 529
BstV2I GAAGAC 1 cut(s) 1132
BstX2I RGATCY 3 cut(s) 833, 1736, 2392
BstXI CCANNNNNNTGG 2 cut(s) 1595, 1634
BstYI RGATCY 3 cut(s) 833, 1736, 2392
Bsu15I ATCGAT 1 cut(s) 1720
BsuRI GGCC 7 cut(s) 527, 699, 955, 1161, 1176, 1515, 1923
BsuTUI ATCGAT 1 cut(s) 1720
BtgZI GCGATG 1 cut(s) 1209
BtrI CACGTC 1 cut(s) 2033
BtsI GCAGTG 1 cut(s) 2540
BtsIMutI CAGTG 6 cut(s) 1117, 1506, 1703, 1950, 2133, 2540
Cac8I GCNNGC 8 cut(s) 701, 1080, 1234, 1338, 1408, 1429, 1617, 1861
CaiI CAGNNNCTG 5 cut(s) 400, 749, 826, 1517, 2070
CciI TCATGA 3 cut(s) 1771, 2479, 2680
Cfr10I RCCGGY 1 cut(s) 785
Cfr13I GGNCC 7 cut(s) 198, 525, 526, 697, 1159, 1514, 1550
ClaI ATCGAT 1 cut(s) 1720
Csp6I GTAC 6 cut(s) 622, 780, 1674, 1680, 1948, 2103
CviQI GTAC 6 cut(s) 622, 780, 1674, 1680, 1948, 2103
DdeI CTNAG 8 cut(s) 6, 645, 1130, 1350, 1644, 2253, 2301, 2420
DrdI GACNNNNNNGTC 1 cut(s) 2060
DseDI GACNNNNNNGTC 1 cut(s) 2060
EaeI YGGCCR 2 cut(s) 953, 1921
Eam1104I CTCTTC 3 cut(s) 511, 1227, 1481
EarI CTCTTC 3 cut(s) 511, 1227, 1481
Ecl136II GAGCTC 1 cut(s) 884
Eco130I CCWWGG 1 cut(s) 1162
Eco24I GRGCYC 2 cut(s) 529, 886
Eco31I GGTCTC 1 cut(s) 1468
Eco32I GATATC 1 cut(s) 2285
Eco47I GGWCC 2 cut(s) 198, 1550
Eco53kI GAGCTC 1 cut(s) 884
Eco57I CTGAAG 5 cut(s) 744, 977, 1313, 1494, 1982
Eco88I CYCGRG 2 cut(s) 887, 1558
EcoICRI GAGCTC 1 cut(s) 884
EcoNI CCTNNNNNAGG 2 cut(s) 1166, 2423
EcoO109I RGGNCCY 2 cut(s) 525, 1514
EcoRI GAATTC 1 cut(s) 906
EcoRII CCWGG 6 cut(s) 589, 829, 910, 1477, 1594, 2086
EcoRV GATATC 1 cut(s) 2285
EcoT14I CCWWGG 1 cut(s) 1162
EcoT22I ATGCAT 1 cut(s) 670
EcoT38I GRGCYC 2 cut(s) 529, 886
ErhI CCWWGG 1 cut(s) 1162
FaqI GGGAC 3 cut(s) 2127, 2260, 2373
FauI CCCGC 1 cut(s) 2237
FbaI TGATCA 1 cut(s) 1456
FriOI GRGCYC 2 cut(s) 529, 886
FspBI CTAG 7 cut(s) 59, 195, 1428, 1788, 1878, 1914, 2676
GsaI CCCAGC 4 cut(s) 328, 1027, 1087, 2392
GsuI CTGGAG 1 cut(s) 2224
HaeIII GGCC 7 cut(s) 527, 699, 955, 1161, 1176, 1515, 1923
HapII CCGG 3 cut(s) 143, 786, 842
HincII GTYRAC 1 cut(s) 2649
HindII GTYRAC 1 cut(s) 2649
HindIII AAGCTT 1 cut(s) 90
HpaII CCGG 3 cut(s) 143, 786, 842
HphI GGTGA 8 cut(s) 698, 1209, 1610, 1678, 1683, 2201, 2269, 2414
Hpy166II GTNNAC 4 cut(s) 1830, 1846, 1950, 2649
Hpy8I GTNNAC 4 cut(s) 1830, 1846, 1950, 2649
HpyAV CCTTC 9 cut(s) 98, 103, 768, 1563, 1581, 1590, 2406, 2459, 2615
HpyCH4III ACNGT 3 cut(s) 246, 2062, 2653
HpyCH4IV ACGT 1 cut(s) 2032
HpyF3I CTNAG 8 cut(s) 6, 645, 1130, 1350, 1644, 2253, 2301, 2420
HpySE526I ACGT 1 cut(s) 2032
Ksp22I TGATCA 1 cut(s) 1456
LmnI GCTCC 4 cut(s) 262, 889, 1024, 2572
MaeI CTAG 7 cut(s) 59, 195, 1428, 1788, 1878, 1914, 2676
MaeII ACGT 1 cut(s) 2032
MaeIII GTNAC 6 cut(s) 929, 1873, 1883, 2331, 2558, 2653
MboII GAAGA 9 cut(s) 528, 983, 1137, 1214, 1498, 1500, 1994, 2037, 2292
MflI RGATCY 3 cut(s) 833, 1736, 2392
MhlI GDGCHC 2 cut(s) 529, 886
MlsI TGGCCA 1 cut(s) 955
MluCI AATT 7 cut(s) 858, 906, 1090, 1183, 1280, 2377, 2504
MluNI TGGCCA 1 cut(s) 955
MlyI GAGTC 7 cut(s) 790, 1766, 2076, 2245, 2339, 2423, 2599
MmeI TCCRAC 3 cut(s) 541, 2290, 2552
Mox20I TGGCCA 1 cut(s) 955
Mph1103I ATGCAT 1 cut(s) 670
MroXI GAANNNNTTC 1 cut(s) 2475
MscI TGGCCA 1 cut(s) 955
MslI CAYNNNNRTG 5 cut(s) 386, 1418, 1632, 1776, 2514
Msp20I TGGCCA 1 cut(s) 955
MspA1I CMGCKG 5 cut(s) 740, 749, 1547, 2223, 2300
MspI CCGG 3 cut(s) 143, 786, 842
MspR9I CCNGG 7 cut(s) 144, 591, 831, 912, 1479, 1596, 2088
Mva1269I GAATGC 4 cut(s) 211, 1140, 2025, 2347
MvaI CCWGG 6 cut(s) 591, 831, 912, 1479, 1596, 2088
NciI CCSGG 1 cut(s) 144
NheI GCTAGC 1 cut(s) 1427
NlaIV GGNNCC 4 cut(s) 526, 527, 1639, 2394
NmuCI GTSAC 2 cut(s) 1883, 2331
NsiI ATGCAT 1 cut(s) 670
NspI RCATGY 4 cut(s) 385, 1340, 1435, 2587
PaeI GCATGC 1 cut(s) 1340
PagI TCATGA 3 cut(s) 1771, 2479, 2680
PctI GAATGC 4 cut(s) 211, 1140, 2025, 2347
PdmI GAANNNNTTC 1 cut(s) 2475
PfeI GAWTC 4 cut(s) 397, 653, 874, 2262
PflFI GACNNNGTC 1 cut(s) 2432
PflMI CCANNNNNTGG 2 cut(s) 706, 2569
PfoI TCCNGGA 1 cut(s) 589
PleI GAGTC 7 cut(s) 790, 1765, 2075, 2245, 2338, 2423, 2599
PpsI GAGTC 7 cut(s) 790, 1765, 2075, 2245, 2338, 2423, 2599
PshBI ATTAAT 2 cut(s) 861, 2376
Psp124BI GAGCTC 1 cut(s) 886
Psp6I CCWGG 6 cut(s) 589, 829, 910, 1477, 1594, 2086
PspFI CCCAGC 4 cut(s) 324, 1023, 1083, 2388
PspGI CCWGG 6 cut(s) 589, 829, 910, 1477, 1594, 2086
PspN4I GGNNCC 4 cut(s) 526, 527, 1639, 2394
PspOMI GGGCCC 1 cut(s) 525
PspPI GGNCC 7 cut(s) 198, 525, 526, 697, 1159, 1514, 1550
PstI CTGCAG 2 cut(s) 745, 1234
PstNI CAGNNNCTG 5 cut(s) 400, 749, 826, 1517, 2070
PsuI RGATCY 3 cut(s) 833, 1736, 2392
PsyI GACNNNGTC 1 cut(s) 2432
PvuII CAGCTG 5 cut(s) 740, 749, 1547, 2223, 2300
RsaI GTAC 6 cut(s) 623, 781, 1675, 1681, 1949, 2104
RsaNI GTAC 6 cut(s) 622, 780, 1674, 1680, 1948, 2103
RseI CAYNNNNRTG 5 cut(s) 386, 1418, 1632, 1776, 2514
SacI GAGCTC 1 cut(s) 886
Sau96I GGNCC 7 cut(s) 198, 525, 526, 697, 1159, 1514, 1550
SchI GAGTC 7 cut(s) 790, 1766, 2076, 2245, 2339, 2423, 2599
ScrFI CCNGG 7 cut(s) 144, 591, 831, 912, 1479, 1596, 2088
SduI GDGCHC 2 cut(s) 529, 886
SfcI CTRYAG 4 cut(s) 741, 1230, 1292, 2292
SinI GGWCC 2 cut(s) 198, 1550
SmiMI CAYNNNNRTG 5 cut(s) 386, 1418, 1632, 1776, 2514
SmlI CTYRAG 2 cut(s) 87, 2485
SmoI CTYRAG 2 cut(s) 87, 2485
SpeI ACTAGT 2 cut(s) 1877, 1913
SphI GCATGC 1 cut(s) 1340
Sse9I AATT 7 cut(s) 858, 906, 1090, 1183, 1280, 2377, 2504
SsiI CCGC 3 cut(s) 101, 1920, 2244
SspI AATATT 1 cut(s) 729
SspMI CTAG 7 cut(s) 59, 195, 1428, 1788, 1878, 1914, 2676
SstI GAGCTC 1 cut(s) 886
StyD4I CCNGG 7 cut(s) 142, 589, 829, 910, 1477, 1594, 2086
StyI CCWWGG 1 cut(s) 1162
TaaI ACNGT 3 cut(s) 246, 2062, 2653
TaiI ACGT 1 cut(s) 2035
TaqI TCGA 8 cut(s) 237, 814, 1150, 1436, 1447, 1720, 1804, 2052
TaqII GACCGA 1 cut(s) 2422
TasI AATT 7 cut(s) 858, 906, 1090, 1183, 1280, 2377, 2504
TauI GCSGC 1 cut(s) 1923
TfiI GAWTC 4 cut(s) 397, 653, 874, 2262
TscAI CASTG 6 cut(s) 1117, 1506, 1710, 1957, 2133, 2547
TseFI GTSAC 2 cut(s) 1883, 2331
Tsp45I GTSAC 2 cut(s) 1883, 2331
TspGWI ACGGA 2 cut(s) 1177, 1853
TspRI CASTG 6 cut(s) 1117, 1506, 1710, 1957, 2133, 2547
Tth111I GACNNNGTC 1 cut(s) 2432
Van91I CCANNNNNTGG 2 cut(s) 706, 2569
VpaK11BI GGWCC 2 cut(s) 198, 1550
VspI ATTAAT 2 cut(s) 861, 2376
XagI CCTNNNNNAGG 2 cut(s) 1166, 2423
XapI RAATTY 4 cut(s) 906, 1090, 1183, 2504
XceI RCATGY 4 cut(s) 385, 1340, 1435, 2587
XcmI CCANNNNNNNNNTGG 2 cut(s) 536, 2273
XmnI GAANNNNTTC 1 cut(s) 2475
XspI CTAG 7 cut(s) 59, 195, 1428, 1788, 1878, 1914, 2676
Zsp2I ATGCAT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.