Rw6G045010

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000670
Physical Location & Seq
Reverse (-)
68135472 .. 68142059
6588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G045010.1

Sequence Viewer

Length: 2700 bp
ATGTCTCAGACTAACTGGGAAGCTGATAAAATGTTAGATGTCTATATCCATGATTATCTAGTGAAAAGAGACTTAAAGGCTTCTGCTCAAGCTTTCCAAGCTGAAGGGAAGGTGTCATCTGATCCCGTTGCTATTGATGCACCGGGAGGTTTTCTATTTGAATGGTGGTCAGTTTTCTGGGATATATTTATTGCTAGGACCAATGAGAAGCATTCAGAAGTTGCTGCATCTTACATCGAGACACAGTTCATTAAAGCAAGGGAGCACCACCAGCAACAACAACAACAGCAACAACAACAACAACAACAGCAACAATCCCAACAACCCCAACACTCACAACAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACACATGCAAATGCAGCAGATTCTGATGCAAAGACATCAGCAGCAACAACAACAGCAACAACAGCAGCAACAACAACAGCAGCCACAGCAACAACAACAGCCACAGCAACAACAACAGCCACAACAGAGAAGAGATGGGGCCCATCTCTTAAATGGAAATACAAATGGGCTTGTTGGAAATGATCCTCTCATGCGACAAAATCCTGGAACAGCAAATGCTATGGCTACAAAGATGTACGAGGAAAGATTAAAACTCCCTCAGAGAGATTCTTTGGATGATTCATCTCTAAAGAGATTTGGTGAGAATGTGGGCCAGCTTTTGGATCAAAATCATGCTTCAATATTAAAGTCAGCTGCAGCAGCTGGTCAGCCTTCAGGGCAAGTTTTGCATGGTACAGCCGGTGGGATGACTCAACAAGTCCAAGCTCGAAATCAGCAACTGCCAGGATCTACGCCGGATATAAAGACAGAAATTAATCCTGTATTGAATCCAAGAGCTCCCGAGGGATCATTGATGGGAATTCCAGGGTCTAATCAGGGTGGTAACAATCTGACTTTGAAAGGATGGCCACTCACAGGTCTGGATCAACTTCGCTCTGGACTTCTTCAGCAACAAAAACCTTTTATACAAGCTCCCCAGCCCTTTCATCAGCTTCAAATGCTGACACCACAACACCAGCAACAACTTATGCTTGCCCAGCAAAATTTGACATCCCCATCTGCCAGTGATGATAGTAGAAGACTAAGAATGCTATTGAATAATCGAAGTATGGGGCTTGGAAAGGATGGCCTTTCAAATTCCGTTGGCGATGTAGTGCCAAATGTAGGATCACCTCTTCAAGCTGCAGGCTCTATGATGCCTCGTGGAGATACAGATATGCTGATGAAGTTAAAAATGGCTCAACTACAGCAACAGCAGAATAGTAATCCACAACAACAGCTTCAGCAGCATGCTCTTTCTGCTCAGCAGTTGCAAAGTTCAAATCATAATCCTCATCAGCAAGATAAAATGGGGGGTGCTGGCAGCATCACAATGGATGCTAGCATGTCGAACTCTTTTCGAGGAAATGATCAGGTCACAAAAAACCAGCCTGGGAGGAAGAGAAAGCAGCCAGTGTCATCTTCAGGCCCTGCCAATAGCACGGGAACAGCAAACACAGCTGGACCTTCCCCGAGTTCAGCTCCTTCCACTCCTTCAACCCACACTCCTGGTGATGTAATATCAATGCCTGCCTTACCCCATAGTGGTGGTTCCTCTAAGCCTCTGATGATGTTTGGTGCTGATGGTACTGGTACGCTCACCTCACCCTCAAATCCACTGGCTGATATGGATCGATTTGTGGAGGATGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCTCATGATGATGCAGACCCTAGAGATGCTGTTGGTCGAGGTATGGATGTCAGCAAAGGGTTCACATTTACGGAAGTAAACTCTGTTAAAGCAAGCCCAAGCAAAGTTACTAGTTGTCACTTCTCATCAGATGGAAAACTTCTTACTAGTGGCGGACATGATAAAAAGGCTGTATTATGGTACACTGATACTCTGAAGTCAAAATCTACACTTGAAGAACATTCAGCTTTGATAACTGATGTTCGGTTCAGTCCGAGCATTCCACGTCTTGCAACATCTTCATTCGACAAAACTGTCAGAGTCTGGGATGCTGATAATCCTGGTTATTCACTTCGTACATTCATGGGACATAATGCATCAGTGATGTCAGTAGATTTCCACCCGAACAAGGACGACCTTATATGTTCTTGTGATGGGGACGGTGAGATACGCTACTGGAGTATTAACAATGGCAGCTGTGCAAGAGTGTTCAAGGGTGGGACGACTCAGGTGAGGTTCCAACCTCGTCTTGGAAGATATCTTGCTGCAGCAGCTGAGAATGTTGTATCTATACTGGATGTGGAGTCACAGGTTTGTCGGCATTCATTAAAGGGACATACAAAGCCTATTAATTCTGTGTGCTGGGATCCTTCTGGTGAGTTCCTTGCATCCCTGAGTGAGGACTTTGTCAGAGTTTGGACTTTCGGATCAGGAAATGAAGGGGAATGTGTTCATGAATTGAGCTGTAATGGCAATAAATTTCATTCCTGTGTTTTCCATCCAACATATACTTCACTGCTGGTCGTTGGTTGTTACCAGTCTTTGGAGCTATGGAACATGCAAGAGAACAAGACAATGACTCTACCAGCACATGAAGGTCTTATTGCTTCGTTGGCTGTGTCAACCGTAACGGGTTTGGTTGCTTCAGCTAGTCATGATAAGTGGGTTAAGCTCTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

899

Amino Acids

98.94

Weight (kDa)

6.58

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 10 - 36 1.8e-06 LisH
Beta-prop_THOC3 PF25174 608 - 671 1.5e-07 THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 608 - 812 1.8e-11 MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd PF25172 611 - 813 1.1e-16 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 617 - 749 1.9e-19 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 618 - 750 1.5e-26 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 618 - 738 1.7e-14 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 618 - 734 1.9e-20 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 619 - 719 2.1e-06 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 620 - 692 5e-09 WDHD1 first WD40 domain
WD40_Gbeta PF25391 621 - 724 6.8e-08 G protein beta WD-40 repeat protein
EIF3I PF24805 621 - 691 2.2e-06 EIF3I
Beta-prop_CAF1B_HIR1 PF24105 621 - 692 1.9e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 649 - 749 2.8e-07 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 650 - 812 8.4e-17 CDC20/Fizzy WD40 domain
WD40 PF00400 653 - 689 1.9e-07 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 660 - 899 1.4e-36 THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 674 - 739 7.4e-06 WDR90/POC16, second beta-propeller
WD40 PF00400 695 - 733 5.6e-06 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 697 - 745 6.1e-07 WDHD1 first WD40 domain
WDR55 PF24796 704 - 865 8e-07 WDR55
WD40_Gbeta PF25391 717 - 898 2.9e-10 G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st PF25173 719 - 858 2.1e-15 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 746 - 898 1.3e-24 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 746 - 899 1.9e-13 WDHD1 first WD40 domain
WD40_Prp19 PF24814 748 - 898 8.6e-17 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 757 - 898 3.2e-07 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 758 - 892 1.9e-07 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_2nd PF25172 759 - 899 1.2e-07 WDR3 second beta-propeller domain
Beta-prop_EIPR1 PF23609 768 - 870 6.7e-06 EIPR1 beta-propeller
WD40 PF00400 777 - 812 4.7e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000670)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32551 AT4G32551
fragaria_vesca FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_1g04170 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940 FvH4_2g29940
malus_domestica MD02G1040200.v1.1 MD08G1139100.v1.1 MD15G1117100.v1.1 MD15G1145100.v1.1
prunus_persica Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.1G468400_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1 Prupe.7G235500_v2.0.a1
pyrus_communis pycom02g03350 pycom08g11750 pycom15g10550 pycom15g16250
rosa_chinensis RchiOBHm_Chr2g0089671 RchiOBHm_Chr3g0465211 RchiOBHm_Chr6g0312941
rosa_laevigata RLG00000010283 RLG00000016050
rosa_multiflora Rmu_sc0000665.1_g000023 Rmu_sc0008049.1_g000043 Rmu_sc0008049.1_g000044
rosa_roxburghii Rroxscaffold_2G00151660 Rroxscaffold_7G00156310
rosa_rugosa Rorug02G0002500 Rorug02G0002500 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400700 Rorug06G0400800.1 Rorug06G0400900.1
rosa_samantha Rh2AG047900 Rh2BG046500 Rh2CG048500 Rh2DG047900 Rh6AG517700 Rh6BG529400 Rh6CG533900 Rh6DG520500
rosa_wichuraiana Rw2G004260 Rw5G017770 Rw6G045010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2051
AccB7I CCANNNNNTGG 2 cut(s) 697, 2560
AciI CCGC 1 cut(s) 1911
AcoI YGGCCR 1 cut(s) 944
AcsI RAATTY 4 cut(s) 897, 1081, 1174, 2495
AcuI CTGAAG 7 cut(s) 123, 735, 968, 1304, 1485, 1973, 2646
AfaI GTAC 6 cut(s) 614, 772, 1666, 1672, 1940, 2095
AfiI CCNNNNNNNGG 8 cut(s) 697, 953, 1202, 1622, 2146, 2267, 2416, 2560
AhlI ACTAGT 2 cut(s) 1868, 1904
AjiI CACGTC 1 cut(s) 2024
AjnI CCWGG 6 cut(s) 580, 820, 901, 1468, 1585, 2077
AjuI GAANNNNNNNTTGG 2 cut(s) 2512, 2544
Alw21I GWGCWC 2 cut(s) 267, 877
Alw26I GTCTC 3 cut(s) 9, 63, 233
AlwNI CAGNNNCTG 6 cut(s) 400, 740, 817, 1508, 2061, 2291
Ama87I CYCGRG 2 cut(s) 878, 1549
AoxI GGCC 5 cut(s) 516, 688, 944, 1165, 1504
ApaI GGGCCC 1 cut(s) 520
ApoI RAATTY 4 cut(s) 897, 1081, 1174, 2495
AseI ATTAAT 2 cut(s) 852, 2367
Asp700I GAANNNNTTC 1 cut(s) 2466
AspS9I GGNCC 6 cut(s) 198, 516, 517, 688, 1505, 1541
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 8 cut(s) 689, 1200, 1601, 1669, 1674, 2192, 2260, 2405
AsuNHI GCTAGC 1 cut(s) 1418
AvaI CYCGRG 2 cut(s) 878, 1549
AvaII GGWCC 2 cut(s) 198, 1541
BaeGI GKGCMC 1 cut(s) 520
BalI TGGCCA 1 cut(s) 946
BamHI GGATCC 1 cut(s) 2383
BanII GRGCYC 2 cut(s) 520, 877
BauI CACGAG 1 cut(s) 1239
BbsI GAAGAC 1 cut(s) 1123
Bbv12I GWGCWC 2 cut(s) 267, 877
BciT130I CCWGG 6 cut(s) 582, 822, 903, 1470, 1587, 2079
BclI TGATCA 1 cut(s) 1447
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 3 cut(s) 9, 63, 233
BcuI ACTAGT 2 cut(s) 1868, 1904
BfaI CTAG 7 cut(s) 59, 195, 1419, 1779, 1869, 1905, 2667
BfmI CTRYAG 4 cut(s) 732, 1221, 1283, 2283
BglI GCCNNNNNGGC 1 cut(s) 754
BlpI GCTNAGC 1 cut(s) 1341
Bme1390I CCNGG 7 cut(s) 144, 582, 822, 903, 1470, 1587, 2079
Bme18I GGWCC 2 cut(s) 198, 1541
BmeT110I CYCGRG 2 cut(s) 878, 1549
BmgBI CACGTC 1 cut(s) 2024
BmgT120I GGNCC 6 cut(s) 198, 516, 517, 688, 1505, 1541
BmiI GGNNCC 5 cut(s) 517, 518, 1630, 2255, 2385
BmrFI CCNGG 7 cut(s) 144, 582, 822, 903, 1470, 1587, 2079
BmrI ACTGGG 1 cut(s) 25
BmtI GCTAGC 1 cut(s) 1422
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 1123
BplI GAGNNNNNCTC 2 cut(s) 1543, 1575
BpmI CTGGAG 1 cut(s) 2215
Bpu1102I GCTNAGC 1 cut(s) 1341
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 144
Bsa29I ATCGAT 1 cut(s) 1711
BsaBI GATNNNNATC 2 cut(s) 705, 1707
BsaJI CCNNGG 3 cut(s) 879, 902, 1469
BsaXI ACNNNNNCTCC 2 cut(s) 1567, 1597
Bsc4I CCNNNNNNNGG 8 cut(s) 697, 953, 1202, 1622, 2146, 2267, 2416, 2560
Bse118I RCCGGY 1 cut(s) 776
Bse1I ACTGG 8 cut(s) 20, 1101, 1490, 1672, 1701, 2198, 2316, 2554
Bse8I GATNNNNATC 2 cut(s) 705, 1707
BseBI CCWGG 6 cut(s) 582, 822, 903, 1470, 1587, 2079
BseCI ATCGAT 1 cut(s) 1711
BseDI CCNNGG 3 cut(s) 879, 902, 1469
BseJI GATNNNNATC 2 cut(s) 705, 1707
BseLI CCNNNNNNNGG 8 cut(s) 697, 953, 1202, 1622, 2146, 2267, 2416, 2560
BseMII CTCAG 6 cut(s) 20, 650, 1355, 2258, 2283, 2402
BseNI ACTGG 8 cut(s) 20, 1101, 1490, 1672, 1701, 2198, 2316, 2554
BseSI GKGCMC 1 cut(s) 520
BseYI CCCAGC 3 cut(s) 1014, 1074, 2379
BshFI GGCC 5 cut(s) 518, 690, 946, 1167, 1506
BshVI ATCGAT 1 cut(s) 1711
BsiHKAI GWGCWC 2 cut(s) 267, 877
BsiHKCI CYCGRG 2 cut(s) 878, 1549
BsiSI CCGG 3 cut(s) 143, 777, 833
BslFI GGGAC 4 cut(s) 2118, 2189, 2251, 2364
BslI CCNNNNNNNGG 8 cut(s) 697, 953, 1202, 1622, 2146, 2267, 2416, 2560
BsmAI GTCTC 3 cut(s) 9, 63, 233
BsmFI GGGAC 4 cut(s) 2118, 2189, 2251, 2364
BsmI GAATGC 4 cut(s) 211, 1131, 2016, 2338
BsnI GGCC 5 cut(s) 518, 690, 946, 1167, 1506
BsoBI CYCGRG 2 cut(s) 878, 1549
Bsp120I GGGCCC 1 cut(s) 516
Bsp1286I GDGCHC 3 cut(s) 267, 520, 877
Bsp1720I GCTNAGC 1 cut(s) 1341
BspACI CCGC 1 cut(s) 1911
BspANI GGCC 5 cut(s) 518, 690, 946, 1167, 1506
BspCNI CTCAG 6 cut(s) 19, 649, 1354, 2257, 2284, 2403
BspDI ATCGAT 1 cut(s) 1711
BspHI TCATGA 3 cut(s) 1762, 2470, 2671
BspLI GGNNCC 5 cut(s) 517, 518, 1630, 2255, 2385
BspMAI CTGCAG 3 cut(s) 736, 1225, 2287
BspOI GCTAGC 1 cut(s) 1422
BsrFI RCCGGY 1 cut(s) 776
BsrI ACTGG 8 cut(s) 20, 1101, 1490, 1672, 1701, 2198, 2316, 2554
BssAI RCCGGY 1 cut(s) 776
BssECI CCNNGG 3 cut(s) 879, 902, 1469
BssSI CACGAG 1 cut(s) 1239
Bst2BI CACGAG 1 cut(s) 1239
Bst2UI CCWGG 6 cut(s) 582, 822, 903, 1470, 1587, 2079
Bst4CI ACNGT 4 cut(s) 246, 2053, 2180, 2644
Bst6I CTCTTC 3 cut(s) 502, 1218, 1472
BstAPI GCANNNNNTGC 2 cut(s) 382, 763
BstC8I GCNNGC 8 cut(s) 692, 1071, 1225, 1329, 1399, 1420, 1608, 1852
BstDEI CTNAG 8 cut(s) 6, 636, 1121, 1341, 1635, 2244, 2292, 2411
BstENI CCTNNNNNAGG 1 cut(s) 2414
BstMAI GTCTC 3 cut(s) 9, 63, 233
BstNI CCWGG 6 cut(s) 582, 822, 903, 1470, 1587, 2079
BstNSI RCATGY 4 cut(s) 385, 1331, 1426, 2578
BstSCI CCNGG 7 cut(s) 142, 580, 820, 901, 1468, 1585, 2077
BstSFI CTRYAG 4 cut(s) 732, 1221, 1283, 2283
BstSLI GKGCMC 1 cut(s) 520
BstV2I GAAGAC 1 cut(s) 1123
BstX2I RGATCY 3 cut(s) 824, 1727, 2383
BstXI CCANNNNNNTGG 2 cut(s) 1586, 1625
BstYI RGATCY 3 cut(s) 824, 1727, 2383
Bsu15I ATCGAT 1 cut(s) 1711
BsuRI GGCC 5 cut(s) 518, 690, 946, 1167, 1506
BsuTUI ATCGAT 1 cut(s) 1711
BtgZI GCGATG 1 cut(s) 1200
BtrI CACGTC 1 cut(s) 2024
BtsI GCAGTG 1 cut(s) 2531
BtsIMutI CAGTG 6 cut(s) 1108, 1497, 1694, 1941, 2124, 2531
Cac8I GCNNGC 8 cut(s) 692, 1071, 1225, 1329, 1399, 1420, 1608, 1852
CaiI CAGNNNCTG 6 cut(s) 400, 740, 817, 1508, 2061, 2291
CciI TCATGA 3 cut(s) 1762, 2470, 2671
Cfr10I RCCGGY 1 cut(s) 776
Cfr13I GGNCC 6 cut(s) 198, 516, 517, 688, 1505, 1541
ClaI ATCGAT 1 cut(s) 1711
Csp6I GTAC 6 cut(s) 613, 771, 1665, 1671, 1939, 2094
CviQI GTAC 6 cut(s) 613, 771, 1665, 1671, 1939, 2094
DdeI CTNAG 8 cut(s) 6, 636, 1121, 1341, 1635, 2244, 2292, 2411
DrdI GACNNNNNNGTC 1 cut(s) 2051
DseDI GACNNNNNNGTC 1 cut(s) 2051
EaeI YGGCCR 1 cut(s) 944
Eam1104I CTCTTC 3 cut(s) 502, 1218, 1472
EarI CTCTTC 3 cut(s) 502, 1218, 1472
EciI GGCGGA 1 cut(s) 1926
Ecl136II GAGCTC 1 cut(s) 875
Eco24I GRGCYC 2 cut(s) 520, 877
Eco32I GATATC 1 cut(s) 2276
Eco47I GGWCC 2 cut(s) 198, 1541
Eco53kI GAGCTC 1 cut(s) 875
Eco57I CTGAAG 7 cut(s) 123, 735, 968, 1304, 1485, 1973, 2646
Eco88I CYCGRG 2 cut(s) 878, 1549
EcoICRI GAGCTC 1 cut(s) 875
EcoNI CCTNNNNNAGG 1 cut(s) 2414
EcoO109I RGGNCCY 2 cut(s) 516, 1505
EcoRI GAATTC 1 cut(s) 897
EcoRII CCWGG 6 cut(s) 580, 820, 901, 1468, 1585, 2077
EcoRV GATATC 1 cut(s) 2276
EcoT22I ATGCAT 1 cut(s) 2116
EcoT38I GRGCYC 2 cut(s) 520, 877
FaqI GGGAC 4 cut(s) 2118, 2189, 2251, 2364
FbaI TGATCA 1 cut(s) 1447
FriOI GRGCYC 2 cut(s) 520, 877
FspBI CTAG 7 cut(s) 59, 195, 1419, 1779, 1869, 1905, 2667
GsaI CCCAGC 3 cut(s) 1018, 1078, 2383
GsuI CTGGAG 1 cut(s) 2215
HaeIII GGCC 5 cut(s) 518, 690, 946, 1167, 1506
HapII CCGG 3 cut(s) 143, 777, 833
HincII GTYRAC 1 cut(s) 2640
HindII GTYRAC 1 cut(s) 2640
HindIII AAGCTT 1 cut(s) 90
HpaII CCGG 3 cut(s) 143, 777, 833
HphI GGTGA 8 cut(s) 689, 1200, 1601, 1669, 1674, 2192, 2260, 2405
Hpy166II GTNNAC 4 cut(s) 1821, 1837, 1941, 2640
Hpy8I GTNNAC 4 cut(s) 1821, 1837, 1941, 2640
HpyAV CCTTC 9 cut(s) 98, 103, 759, 1554, 1572, 1581, 2397, 2450, 2606
HpyCH4III ACNGT 4 cut(s) 246, 2053, 2180, 2644
HpyCH4IV ACGT 1 cut(s) 2023
HpyF3I CTNAG 8 cut(s) 6, 636, 1121, 1341, 1635, 2244, 2292, 2411
HpySE526I ACGT 1 cut(s) 2023
Ksp22I TGATCA 1 cut(s) 1447
LmnI GCTCC 5 cut(s) 262, 880, 1015, 1564, 2563
MaeI CTAG 7 cut(s) 59, 195, 1419, 1779, 1869, 1905, 2667
MaeII ACGT 1 cut(s) 2023
MaeIII GTNAC 7 cut(s) 920, 1453, 1864, 1874, 2322, 2549, 2644
MboII GAAGA 9 cut(s) 519, 974, 1128, 1205, 1489, 1491, 1985, 2028, 2283
MflI RGATCY 3 cut(s) 824, 1727, 2383
MhlI GDGCHC 3 cut(s) 267, 520, 877
MlsI TGGCCA 1 cut(s) 946
MluCI AATT 7 cut(s) 849, 897, 1081, 1174, 2368, 2474, 2495
MluNI TGGCCA 1 cut(s) 946
MlyI GAGTC 6 cut(s) 781, 1757, 2067, 2236, 2330, 2590
MmeI TCCRAC 3 cut(s) 532, 2281, 2543
Mox20I TGGCCA 1 cut(s) 946
Mph1103I ATGCAT 1 cut(s) 2116
MroXI GAANNNNTTC 1 cut(s) 2466
MscI TGGCCA 1 cut(s) 946
MslI CAYNNNNRTG 5 cut(s) 386, 1409, 1623, 1767, 2505
Msp20I TGGCCA 1 cut(s) 946
MspA1I CMGCKG 5 cut(s) 731, 740, 1538, 2214, 2291
MspI CCGG 3 cut(s) 143, 777, 833
MspR9I CCNGG 7 cut(s) 144, 582, 822, 903, 1470, 1587, 2079
Mva1269I GAATGC 4 cut(s) 211, 1131, 2016, 2338
MvaI CCWGG 6 cut(s) 582, 822, 903, 1470, 1587, 2079
NciI CCSGG 1 cut(s) 144
NheI GCTAGC 1 cut(s) 1418
NlaIV GGNNCC 5 cut(s) 517, 518, 1630, 2255, 2385
NmuCI GTSAC 3 cut(s) 1453, 1874, 2322
NsiI ATGCAT 1 cut(s) 2116
NspI RCATGY 4 cut(s) 385, 1331, 1426, 2578
PaeI GCATGC 1 cut(s) 1331
PagI TCATGA 3 cut(s) 1762, 2470, 2671
PctI GAATGC 4 cut(s) 211, 1131, 2016, 2338
PdmI GAANNNNTTC 1 cut(s) 2466
PfeI GAWTC 4 cut(s) 397, 644, 656, 865
PflFI GACNNNGTC 1 cut(s) 2423
PflMI CCANNNNNTGG 2 cut(s) 697, 2560
PfoI TCCNGGA 1 cut(s) 580
PleI GAGTC 6 cut(s) 781, 1756, 2066, 2236, 2329, 2590
PpsI GAGTC 6 cut(s) 781, 1756, 2066, 2236, 2329, 2590
PshBI ATTAAT 2 cut(s) 852, 2367
Psp124BI GAGCTC 1 cut(s) 877
Psp6I CCWGG 6 cut(s) 580, 820, 901, 1468, 1585, 2077
PspFI CCCAGC 3 cut(s) 1014, 1074, 2379
PspGI CCWGG 6 cut(s) 580, 820, 901, 1468, 1585, 2077
PspN4I GGNNCC 5 cut(s) 517, 518, 1630, 2255, 2385
PspOMI GGGCCC 1 cut(s) 516
PspPI GGNCC 6 cut(s) 198, 516, 517, 688, 1505, 1541
PstI CTGCAG 3 cut(s) 736, 1225, 2287
PstNI CAGNNNCTG 6 cut(s) 400, 740, 817, 1508, 2061, 2291
PsuI RGATCY 3 cut(s) 824, 1727, 2383
PsyI GACNNNGTC 1 cut(s) 2423
PvuII CAGCTG 5 cut(s) 731, 740, 1538, 2214, 2291
RsaI GTAC 6 cut(s) 614, 772, 1666, 1672, 1940, 2095
RsaNI GTAC 6 cut(s) 613, 771, 1665, 1671, 1939, 2094
RseI CAYNNNNRTG 5 cut(s) 386, 1409, 1623, 1767, 2505
SacI GAGCTC 1 cut(s) 877
Sau96I GGNCC 6 cut(s) 198, 516, 517, 688, 1505, 1541
SchI GAGTC 6 cut(s) 781, 1757, 2067, 2236, 2330, 2590
ScrFI CCNGG 7 cut(s) 144, 582, 822, 903, 1470, 1587, 2079
SduI GDGCHC 3 cut(s) 267, 520, 877
SfcI CTRYAG 4 cut(s) 732, 1221, 1283, 2283
SinI GGWCC 2 cut(s) 198, 1541
SmiMI CAYNNNNRTG 5 cut(s) 386, 1409, 1623, 1767, 2505
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
SpeI ACTAGT 2 cut(s) 1868, 1904
SphI GCATGC 1 cut(s) 1331
Sse9I AATT 7 cut(s) 849, 897, 1081, 1174, 2368, 2474, 2495
SsiI CCGC 1 cut(s) 1911
SspI AATATT 1 cut(s) 720
SspMI CTAG 7 cut(s) 59, 195, 1419, 1779, 1869, 1905, 2667
SstI GAGCTC 1 cut(s) 877
StyD4I CCNGG 7 cut(s) 142, 580, 820, 901, 1468, 1585, 2077
TaaI ACNGT 4 cut(s) 246, 2053, 2180, 2644
TaiI ACGT 1 cut(s) 2026
TaqI TCGA 8 cut(s) 237, 805, 1141, 1427, 1438, 1711, 1795, 2043
TasI AATT 7 cut(s) 849, 897, 1081, 1174, 2368, 2474, 2495
TfiI GAWTC 4 cut(s) 397, 644, 656, 865
TscAI CASTG 6 cut(s) 1108, 1497, 1701, 1948, 2124, 2538
TseFI GTSAC 3 cut(s) 1453, 1874, 2322
Tsp45I GTSAC 3 cut(s) 1453, 1874, 2322
TspGWI ACGGA 2 cut(s) 1168, 1844
TspRI CASTG 6 cut(s) 1108, 1497, 1701, 1948, 2124, 2538
Tth111I GACNNNGTC 1 cut(s) 2423
Van91I CCANNNNNTGG 2 cut(s) 697, 2560
VpaK11BI GGWCC 2 cut(s) 198, 1541
VspI ATTAAT 2 cut(s) 852, 2367
XagI CCTNNNNNAGG 1 cut(s) 2414
XapI RAATTY 4 cut(s) 897, 1081, 1174, 2495
XceI RCATGY 4 cut(s) 385, 1331, 1426, 2578
XcmI CCANNNNNNNNNTGG 2 cut(s) 527, 2264
XmnI GAANNNNTTC 1 cut(s) 2466
XspI CTAG 7 cut(s) 59, 195, 1419, 1779, 1869, 1905, 2667
Zsp2I ATGCAT 1 cut(s) 2116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.