AT2G27960

Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014191
Physical Location & Seq
Reverse (-)
11910569 .. 11911802
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27960.1

Sequence Viewer

Length: 264 bp
ATGGGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTACGCGGTTCATCGACCTGAGCCGCACATAATGCTATTCAGGAGGCCTCTTAACTATCAGCAGCAGCAGGAGAATCAAGCTCAGAACATGCTTGTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0000151 GO:0000278 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0007346 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019005 GO:0019207 GO:0019209 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031461 GO:0032147 GO:0032182 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042023 GO:0042325 GO:0042327 GO:0042393 GO:0043085 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043539 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061575 GO:0061695 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0090304 GO:0098772 GO:1901360 GO:1901576 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04111 ko05200 ko05222 map04111 map05200 map05222
Pfam Domains
Protein Families
CKS

Protein Analysis

87

Amino Acids

10.52

Weight (kDa)

9.1

Isoelectric Point (pI)

65.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CKS PF01111 4 - 70 8.5e-37 Cyclin-dependent kinase regulatory subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27960 AT2G27970
fragaria_vesca FvH4_3g30520 FvH4_3g30520
malus_domestica MD03G1128000.v1.1 MD11G1149400.v1.1
prunus_persica Prupe.6G113800_v2.0.a1 Prupe.6G113800_v2.0.a1
pyrus_communis pycom11g12220
rosa_chinensis RchiOBHm_Chr5g0056481
rosa_multiflora Rmu_sc0000850.1_g000012 Rmu_sc0002761.1_g000014
rosa_roxburghii Rroxscaffold_1G00023840
rosa_rugosa Rorug05G0300300
rosa_samantha Rh5AG370800 Rh5CG405200
rosa_wichuraiana Rw5G034730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 150, 167
AciI CCGC 4 cut(s) 148, 150, 167, 185
AclWI GGATC 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 154
AjiI CACGTC 1 cut(s) 58
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
AlwI GGATC 1 cut(s) 4
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 3 cut(s) 139, 223, 226
Asp700I GAANNNNTTC 1 cut(s) 29
AsuII TTCGAA 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 95
BbvI GCAGC 3 cut(s) 151, 235, 238
BccI CCATC 1 cut(s) 147
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BisI GCNGC 5 cut(s) 140, 148, 185, 224, 227
BlsI GCNGC 5 cut(s) 141, 149, 186, 225, 228
BmgBI CACGTC 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 95
Bpu10I CCTNAGC 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 171, 257
BseXI GCAGC 3 cut(s) 151, 235, 238
BsgI GTGCAG 1 cut(s) 158
Bsh1236I CGCG 2 cut(s) 150, 167
BshFI GGCC 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 154
BsnI GGCC 1 cut(s) 208
Bsp119I TTCGAA 1 cut(s) 45
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 4 cut(s) 148, 150, 167, 185
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 2 cut(s) 172, 256
BspFNI CGCG 2 cut(s) 150, 167
BspPI GGATC 1 cut(s) 4
BspT104I TTCGAA 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 193
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 180, 243
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 1 cut(s) 158
BstFNI CGCG 2 cut(s) 150, 167
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 253
BstUI CGCG 2 cut(s) 150, 167
BstV1I GCAGC 3 cut(s) 151, 235, 238
BstV2I GAAGAC 1 cut(s) 95
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BsuRI GGCC 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 148
BtrI CACGTC 1 cut(s) 58
BtsCI GGATG 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 126
Cfr42I CCGCGG 1 cut(s) 151
Csp6I GTAC 1 cut(s) 158
CviAII CATG 1 cut(s) 250
CviJI RGCY 4 cut(s) 147, 184, 208, 242
CviKI_1 RGCY 4 cut(s) 147, 184, 208, 242
CviQI GTAC 1 cut(s) 158
DdeI CTNAG 2 cut(s) 180, 243
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco147I AGGCCT 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 93
FaeI CATG 1 cut(s) 253
FaiI YATR 2 cut(s) 191, 251
FatI CATG 1 cut(s) 249
Fnu4HI GCNGC 5 cut(s) 140, 148, 185, 224, 227
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 5 cut(s) 140, 148, 185, 224, 227
GluI GCNGC 5 cut(s) 140, 148, 185, 224, 227
HaeIII GGCC 1 cut(s) 208
Hin1II CATG 1 cut(s) 253
HinfI GANTC 2 cut(s) 97, 235
Hpy188I TCNGA 4 cut(s) 9, 22, 112, 246
Hpy188III TCNNGA 2 cut(s) 71, 202
Hpy99I CGWCG 1 cut(s) 62
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 2 cut(s) 180, 243
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 1 cut(s) 253
KspI CCGCGG 1 cut(s) 151
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 37, 84, 187, 192, 215
Lsp1109I GCAGC 3 cut(s) 151, 235, 238
MaeII ACGT 1 cut(s) 57
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 3 cut(s) 56, 80, 95
MflI RGATCY 1 cut(s) 9
MnlI CCTC 3 cut(s) 78, 198, 219
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 2 cut(s) 213, 258
MspA1I CMGCKG 1 cut(s) 150
MvnI CGCG 2 cut(s) 150, 167
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeII GATC 1 cut(s) 9
NlaIII CATG 1 cut(s) 253
NspI RCATGY 1 cut(s) 253
NspV TTCGAA 1 cut(s) 45
PceI AGGCCT 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 97, 235
PkrI GCNGC 5 cut(s) 141, 149, 186, 225, 228
PsuI RGATCY 1 cut(s) 9
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
SacII CCGCGG 1 cut(s) 151
SaqAI TTAA 2 cut(s) 213, 258
SatI GCNGC 5 cut(s) 140, 148, 185, 224, 227
Sau3AI GATC 1 cut(s) 9
SetI ASST 3 cut(s) 60, 181, 244
Sfr303I CCGCGG 1 cut(s) 151
SfuI TTCGAA 1 cut(s) 45
SgrBI CCGCGG 1 cut(s) 151
SseBI AGGCCT 1 cut(s) 208
SsiI CCGC 4 cut(s) 148, 150, 167, 185
StuI AGGCCT 1 cut(s) 208
TaiI ACGT 1 cut(s) 60
TaqI TCGA 3 cut(s) 33, 45, 175
TauI GCSGC 2 cut(s) 150, 187
TfiI GAWTC 2 cut(s) 97, 235
Tru1I TTAA 2 cut(s) 213, 258
Tru9I TTAA 2 cut(s) 213, 258
TseI GCWGC 3 cut(s) 139, 223, 226
TspDTI ATGAA 1 cut(s) 161
XceI RCATGY 1 cut(s) 253
XmnI GAANNNNTTC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.