Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014191

Physical Location & Seq

Genomic Coordinates Reverse (-)

11912151 .. 11913425

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G27970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGGTCAGATCCAGTACTCCGACAAATATTTCGATGATACTTTCGAATACAGGCACGTTGTACTTCCTCCGGAAGTTGCTAAGCTTTTACCTAAGAATCGTATTCTTTCGGAAAGTGAATGGAGAGCCATCGGAGTGCAGCAAAGTCGTGGATGGGTTCATTACGCGATTCATCGTCCTGAGCCACATATCATGCTCTTTAGGAGGCCTCTTAACTACCAGCAGGAGCACCAAGCTCAGATTGCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000151 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007346 GO:0008047 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019005 GO:0019207 GO:0019209 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0019899 GO:0019900 GO:0019901 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031461 GO:0032147 GO:0032182 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0042393 GO:0043085 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043539 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061575 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04111 ko05200 ko05222 map04111 map05200 map05222

Pfam Domains

Protein Families

CKS

Protein Analysis

83

Amino Acids

9.99

Weight (kDa)

9.1

Isoelectric Point (pI)

68.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CKS	PF01111	4 - 70	8.4e-37	Cyclin-dependent kinase regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27960 AT2G27970
fragaria_vesca	FvH4_3g30520 FvH4_3g30520
malus_domestica	MD03G1128000.v1.1 MD11G1149400.v1.1
prunus_persica	Prupe.6G113800_v2.0.a1 Prupe.6G113800_v2.0.a1
pyrus_communis	pycom11g12220
rosa_chinensis	RchiOBHm_Chr5g0056481
rosa_multiflora	Rmu_sc0000850.1_g000012 Rmu_sc0002761.1_g000014
rosa_roxburghii	Rroxscaffold_1G00023840
rosa_rugosa	Rorug05G0300300
rosa_samantha	Rh5AG370800 Rh5CG405200
rosa_wichuraiana	Rw5G034730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	167
AccIII	TCCGGA	1 cut(s)	70
AclWI	GGATC	1 cut(s)	4
AfaI	GTAC	2 cut(s)	17, 63
AluBI	AGCT	2 cut(s)	85, 236
AluI	AGCT	2 cut(s)	85, 236
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	4
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	139
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
AsuII	TTCGAA	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	2 cut(s)	137, 147
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BisI	GCNGC	1 cut(s)	140
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	141
BmcAI	AGTACT	1 cut(s)	17
Bpu10I	CCTNAGC	1 cut(s)	180
Bpu1102I	GCTNAGC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	13
BseAI	TCCGGA	1 cut(s)	70
BseGI	GGATG	1 cut(s)	158
BseMII	CTCAG	2 cut(s)	171, 251
BseNI	ACTGG	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	71
BsnI	GGCC	1 cut(s)	208
Bsp119I	TTCGAA	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	9
Bsp1720I	GCTNAGC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	2 cut(s)	172, 250
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	167
BspPI	GGATC	1 cut(s)	4
BspT104I	TTCGAA	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	13
BssMI	GATC	1 cut(s)	9
BstBI	TTCGAA	1 cut(s)	45
BstDEI	CTNAG	5 cut(s)	81, 93, 180, 237, 246
BstF5I	GGATG	1 cut(s)	158
BstFNI	CGCG	1 cut(s)	167
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	16, 62
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	5 cut(s)	85, 128, 184, 208, 236
CviKI_1	RGCY	5 cut(s)	85, 128, 184, 208, 236
CviQI	GTAC	2 cut(s)	16, 62
DdeI	CTNAG	5 cut(s)	81, 93, 180, 237, 246
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eco147I	AGGCCT	1 cut(s)	208
FaeI	CATG	1 cut(s)	196
FaiI	YATR	2 cut(s)	189, 194
FatI	CATG	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	2 cut(s)	97, 169
HpaII	CCGG	1 cut(s)	71
Hpy188I	TCNGA	5 cut(s)	9, 22, 112, 134, 240
Hpy188III	TCNNGA	2 cut(s)	71, 179
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	5 cut(s)	81, 93, 180, 237, 246
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	196
Kpn2I	TCCGGA	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	6 cut(s)	26, 37, 84, 192, 209, 233
Lsp1109I	GCAGC	1 cut(s)	151
MaeII	ACGT	1 cut(s)	57
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	3 cut(s)	78, 198, 219
MroI	TCCGGA	1 cut(s)	70
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	134
MspI	CCGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	1 cut(s)	196
NspV	TTCGAA	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	97, 169
PkrI	GCNGC	1 cut(s)	141
PsuI	RGATCY	1 cut(s)	9
RsaI	GTAC	2 cut(s)	17, 63
RsaNI	GTAC	2 cut(s)	16, 62
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	9
ScaI	AGTACT	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	4 cut(s)	60, 87, 94, 238
SfuI	TTCGAA	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	134
SseBI	AGGCCT	1 cut(s)	208
SspI	AATATT	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	33, 45
TatI	WGTACW	2 cut(s)	15, 61
TfiI	GAWTC	2 cut(s)	97, 169
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseI	GCWGC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	149, 161
ZrmI	AGTACT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.