Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0014191

Physical Location & Seq

Genomic Coordinates Forward (+)

59880443 .. 59881902

Gene Structure 1460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G034730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGGTCAGATCCAGTACTCTGAGAAATACTTCGATGATACTTACGAGTACAGGCATGTGGTTCTTCCTCCAGAAGTGTCCAAACTGCTTCCAAAGAATAGGCTTCTTTCTGAGAATGAATGGCGTGCTATTGGGGTTCAGCAGAGCCGTGGTTGGGTCCACTATGCAATTCATCGCCCTGAGCCACACATCATGCTCTTCCGGAGGCCATTGAACTATCAGCAGCAGCAGGAGAACCAGGCTGTGCTGTCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000151 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007346 GO:0008047 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019005 GO:0019207 GO:0019209 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0019899 GO:0019900 GO:0019901 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031461 GO:0032147 GO:0032182 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0042393 GO:0043085 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043539 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061575 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04111 ko05200 ko05222 map04111 map05200 map05222

Pfam Domains

Protein Families

CKS

Protein Analysis

85

Amino Acids

10.28

Weight (kDa)

9.05

Isoelectric Point (pI)

66.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CKS	PF01111	4 - 70	3.5e-37	Cyclin-dependent kinase regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27960 AT2G27970
fragaria_vesca	FvH4_3g30520 FvH4_3g30520
malus_domestica	MD03G1128000.v1.1 MD11G1149400.v1.1
prunus_persica	Prupe.6G113800_v2.0.a1 Prupe.6G113800_v2.0.a1
pyrus_communis	pycom11g12220
rosa_chinensis	RchiOBHm_Chr5g0056481
rosa_multiflora	Rmu_sc0000850.1_g000012 Rmu_sc0002761.1_g000014
rosa_roxburghii	Rroxscaffold_1G00023840
rosa_rugosa	Rorug05G0300300
rosa_samantha	Rh5AG370800 Rh5CG405200
rosa_wichuraiana	Rw5G034730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	201
AclWI	GGATC	1 cut(s)	4
AfaI	GTAC	2 cut(s)	17, 50
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	237
AlwI	GGATC	1 cut(s)	4
Aor13HI	TCCGGA	1 cut(s)	201
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	223, 226
Asp700I	GAANNNNTTC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	235, 238
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	239
BisI	GCNGC	2 cut(s)	224, 227
BlsI	GCNGC	2 cut(s)	225, 228
BmcAI	AGTACT	1 cut(s)	17
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	54
Bpu10I	CCTNAGC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	148
BsaWI	WCCGGW	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	13
BseAI	TCCGGA	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	3 cut(s)	12, 102, 171
BseNI	ACTGG	1 cut(s)	13
BseXI	GCAGC	2 cut(s)	235, 238
BshFI	GGCC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	154
BsnI	GGCC	1 cut(s)	208
Bsp13I	TCCGGA	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	3 cut(s)	13, 103, 172
BspEI	TCCGGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	4
BspQI	GCTCTTC	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	3 cut(s)	21, 111, 180
BstDSI	CCRYGG	1 cut(s)	148
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	235, 238
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	208
BtgI	CCRYGG	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	16, 49
CviAII	CATG	2 cut(s)	56, 193
CviJI	RGCY	5 cut(s)	103, 147, 184, 208, 242
CviKI_1	RGCY	5 cut(s)	103, 147, 184, 208, 242
CviQI	GTAC	2 cut(s)	16, 49
DdeI	CTNAG	3 cut(s)	21, 111, 180
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	237
FaeI	CATG	2 cut(s)	59, 196
FaiI	YATR	3 cut(s)	57, 165, 194
FatI	CATG	2 cut(s)	55, 192
Fnu4HI	GCNGC	2 cut(s)	224, 227
Fsp4HI	GCNGC	2 cut(s)	224, 227
GluI	GCNGC	2 cut(s)	224, 227
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	1 cut(s)	202
Hin1II	CATG	2 cut(s)	59, 196
HpaII	CCGG	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	3 cut(s)	9, 22, 112
Hpy188III	TCNNGA	2 cut(s)	71, 202
Hpy8I	GTNNAC	1 cut(s)	160
HpyCH4V	TGCA	1 cut(s)	167
HpyF3I	CTNAG	3 cut(s)	21, 111, 180
Hsp92II	CATG	2 cut(s)	59, 196
Kpn2I	TCCGGA	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	9
LguI	GCTCTTC	1 cut(s)	203
LpnPI	CCDG	8 cut(s)	26, 37, 84, 192, 215, 215, 224, 251
Lsp1109I	GCAGC	2 cut(s)	235, 238
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	2 cut(s)	56, 190
MflI	RGATCY	1 cut(s)	9
MluCI	AATT	1 cut(s)	168
MnlI	CCTC	2 cut(s)	78, 198
MroI	TCCGGA	1 cut(s)	201
MroXI	GAANNNNTTC	1 cut(s)	29
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	2 cut(s)	59, 196
NlaIV	GGNNCC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	225, 228
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	9
RsaI	GTAC	2 cut(s)	17, 50
RsaNI	GTAC	2 cut(s)	16, 49
SapI	GCTCTTC	1 cut(s)	203
SatI	GCNGC	2 cut(s)	224, 227
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	157
ScaI	AGTACT	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	239
SinI	GGWCC	1 cut(s)	157
Sse9I	AATT	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	237
TaqI	TCGA	1 cut(s)	33
TasI	AATT	1 cut(s)	168
TatI	WGTACW	2 cut(s)	15, 48
TseI	GCWGC	2 cut(s)	223, 226
TspDTI	ATGAA	2 cut(s)	132, 161
VpaK11BI	GGWCC	1 cut(s)	157
XceI	RCATGY	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	29
ZrmI	AGTACT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.