Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0014191

Physical Location & Seq

Genomic Coordinates Reverse (-)

34914983 .. 34916177

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0300300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTGTTTTTGGTACCAGAGCTTCCCTTCTTTACAGACACCAGAGCTTCTGTACAAGTCACTTGCAGCAAAACTTGTCGTGGGCATGCCATTTAAGGATCTGGCAACAGTTGACTCGATCTTATTGAGACAACTACCACCTGTTGACGACGATGATTCTCGTCTGGCTCTCAAAAGGTTGATAGATGTAAGTATGGGTGTTATAACGCCATTGTCAGAGCAGCTTACGAAACCATTACCAAATGCCATGGTTATGGTAAATTCAAAGGAATTATCAACTAGTGCATACAAGCTTTTTCCAGAAGGTACACGCTTGGTTGTCTCGGTCCGTGGTGATGAACCCTATGAAGATATGGATCTTCTCAAAGGCCTTGATGTTACAATGCTTTTTTATGACCTGCCATTCAGTGAAGAGAAAATAAGCCGAGTGCATGCAGCAAGGAGGCTTTATGAGTATCTGGGAGACAATGATCTAAACTTTCCTGTAATACACCATATTCAGTTTCCAAGTGGAATTCATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000151 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007346 GO:0008047 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019005 GO:0019207 GO:0019209 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0019899 GO:0019900 GO:0019901 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031461 GO:0032147 GO:0032182 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0042393 GO:0043085 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043539 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061575 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04111 ko05200 ko05222 map04111 map05200 map05222

Pfam Domains

Protein Families

CKS

Protein Analysis

174

Amino Acids

19.8

Weight (kDa)

5.33

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27960 AT2G27970
fragaria_vesca	FvH4_3g30520 FvH4_3g30520
malus_domestica	MD03G1128000.v1.1 MD11G1149400.v1.1
prunus_persica	Prupe.6G113800_v2.0.a1 Prupe.6G113800_v2.0.a1
pyrus_communis	pycom11g12220
rosa_chinensis	RchiOBHm_Chr5g0056481
rosa_multiflora	Rmu_sc0000850.1_g000012 Rmu_sc0002761.1_g000014
rosa_roxburghii	Rroxscaffold_1G00023840
rosa_rugosa	Rorug05G0300300
rosa_samantha	Rh5AG370800 Rh5CG405200
rosa_wichuraiana	Rw5G034730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
Acc36I	ACCTGC	1 cut(s)	405
Acc65I	GGTACC	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	12
AclWI	GGATC	2 cut(s)	105, 363
AcsI	RAATTY	2 cut(s)	259, 513
AfaI	GTAC	3 cut(s)	14, 53, 307
AgsI	TTSAA	1 cut(s)	264
AhlI	ACTAGT	1 cut(s)	278
AluBI	AGCT	4 cut(s)	21, 46, 223, 292
AluI	AGCT	4 cut(s)	21, 46, 223, 292
Alw26I	GTCTC	3 cut(s)	121, 325, 456
AlwI	GGATC	2 cut(s)	105, 363
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	3 cut(s)	65, 220, 434
ApoI	RAATTY	2 cut(s)	259, 513
Asp718I	GGTACC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	12
BarI	GAAGNNNNNNTAC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	77, 232, 446
BcoDI	GTCTC	3 cut(s)	121, 325, 456
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	405
BisI	GCNGC	3 cut(s)	66, 221, 435
BlsI	GCNGC	3 cut(s)	67, 222, 436
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	14
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	246, 328
Bse8I	GATNNNNATC	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	246, 328
BseJI	GATNNNNATC	1 cut(s)	354
BseXI	GCAGC	3 cut(s)	77, 232, 446
BshFI	GGCC	1 cut(s)	369
BshNI	GGYRCC	1 cut(s)	12
BsmAI	GTCTC	3 cut(s)	121, 325, 456
BsnI	GGCC	1 cut(s)	369
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	4 cut(s)	97, 117, 355, 469
Bsp19I	CCATGG	1 cut(s)	246
BspANI	GGCC	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	14
BspMI	ACCTGC	1 cut(s)	405
BspPI	GGATC	2 cut(s)	105, 363
BspT107I	GGYRCC	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	246, 328
BssMI	GATC	4 cut(s)	97, 117, 355, 469
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	405
BstAUI	TGTACA	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	86, 432
BstDSI	CCRYGG	2 cut(s)	246, 328
BstKTI	GATC	4 cut(s)	100, 120, 358, 472
BstMAI	GTCTC	3 cut(s)	121, 325, 456
BstMBI	GATC	4 cut(s)	97, 117, 355, 469
BstNSI	RCATGY	2 cut(s)	88, 434
BstV1I	GCAGC	3 cut(s)	77, 232, 446
BstX2I	RGATCY	2 cut(s)	97, 355
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	2 cut(s)	97, 355
BsuRI	GGCC	1 cut(s)	369
BtgI	CCRYGG	2 cut(s)	246, 328
BtsIMutI	CAGTG	1 cut(s)	412
BveI	ACCTGC	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	86, 432
Cfr13I	GGNCC	1 cut(s)	325
CpoI	CGGWCCG	1 cut(s)	325
Csp6I	GTAC	3 cut(s)	13, 52, 306
CspI	CGGWCCG	1 cut(s)	325
CviAII	CATG	3 cut(s)	85, 247, 431
CviJI	RGCY	8 cut(s)	21, 46, 167, 223, 292, 369, 423, 445
CviKI_1	RGCY	8 cut(s)	21, 46, 167, 223, 292, 369, 423, 445
CviQI	GTAC	3 cut(s)	13, 52, 306
DpnI	GATC	4 cut(s)	99, 119, 357, 471
DpnII	GATC	4 cut(s)	97, 117, 355, 469
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	246
Eco147I	AGGCCT	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	3 cut(s)	88, 250, 434
FatI	CATG	3 cut(s)	84, 246, 430
Fnu4HI	GCNGC	3 cut(s)	66, 221, 435
Fsp4HI	GCNGC	3 cut(s)	66, 221, 435
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	3 cut(s)	66, 221, 435
HaeIII	GGCC	1 cut(s)	369
Hin1II	CATG	3 cut(s)	88, 250, 434
HincII	GTYRAC	2 cut(s)	112, 145
HindII	GTYRAC	2 cut(s)	112, 145
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	2 cut(s)	113, 155
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	3 cut(s)	112, 145, 308
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	3 cut(s)	112, 145, 308
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	36, 296
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	4 cut(s)	65, 284, 430, 434
Hsp92II	CATG	3 cut(s)	88, 250, 434
KpnI	GGTACC	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	97, 117, 355, 469
LpnPI	CCDG	9 cut(s)	29, 54, 86, 149, 153, 312, 410, 443, 495
Lsp1109I	GCAGC	3 cut(s)	77, 232, 446
MaeI	CTAG	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	57, 376
MalI	GATC	4 cut(s)	99, 119, 357, 471
MboI	GATC	4 cut(s)	97, 117, 355, 469
MboII	GAAGA	3 cut(s)	350, 359, 422
MflI	RGATCY	2 cut(s)	97, 355
MluCI	AATT	3 cut(s)	259, 269, 513
MlyI	GAGTC	1 cut(s)	107
MnlI	CCTC	1 cut(s)	435
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	4 cut(s)	97, 117, 355, 469
NlaIII	CATG	3 cut(s)	88, 250, 434
NlaIV	GGNNCC	1 cut(s)	14
NmeAIII	GCCGAG	1 cut(s)	449
NmuCI	GTSAC	1 cut(s)	57
NspI	RCATGY	2 cut(s)	88, 434
PaeI	GCATGC	2 cut(s)	88, 434
PceI	AGGCCT	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	67, 222, 436
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	325
PsuI	RGATCY	2 cut(s)	97, 355
RsaI	GTAC	3 cut(s)	14, 53, 307
RsaNI	GTAC	3 cut(s)	13, 52, 306
RseI	CAYNNNNRTG	1 cut(s)	251
Rsr2I	CGGWCCG	1 cut(s)	325
RsrII	CGGWCCG	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	3 cut(s)	66, 221, 435
Sau3AI	GATC	4 cut(s)	97, 117, 355, 469
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	1 cut(s)	107
SetI	ASST	9 cut(s)	23, 48, 142, 179, 225, 294, 307, 399, 524
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	251
SpeI	ACTAGT	1 cut(s)	278
SphI	GCATGC	2 cut(s)	88, 434
Sse9I	AATT	3 cut(s)	259, 269, 513
SseBI	AGGCCT	1 cut(s)	369
SspMI	CTAG	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	116
TaqII	GACCGA	1 cut(s)	313
TasI	AATT	3 cut(s)	259, 269, 513
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	3 cut(s)	65, 220, 434
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	3 cut(s)	351, 360, 506
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	2 cut(s)	259, 513
XceI	RCATGY	2 cut(s)	88, 434
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.