AT2G28410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016145
Physical Location & Seq
Forward (+)
12156022 .. 12156984
963 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28410.1

Sequence Viewer

Length: 348 bp
ATGACTTCGAAAACATGCCTCGTCTTCTTCTTCTCTTCTCTAATCTTAACAAACTTCGCCTTAGCGCAAGACCGAGCTCCTCACGGGTTGGCTTATGAGACCCCAGTGGCATTTTCACCTTCTGCATTTGACTTCTTTCACACACAACCAGAAAACCCGGATCCCACTTTCAACCCTTGCTCGGAATCCGGCTGCTCACCTCTTCCCGTTGCTGCAAAGGTCCAAGGAGCTTCTGCGAAAGCACAGGAAAGCGATATAGTATCAATTTCAACTGGTACAAGAAGCGGAATAGAAGAACATGGTGTGGTTGGAATCATCTTTGGACTTGCGTTTGCGGTGATGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.16

Weight (kDa)

4.87

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28410
fragaria_vesca FvH4_3g32270
malus_domestica MD03G1117800.v1.1 MD11G1136100.v1.1
prunus_persica Prupe.6G101500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0059071
rosa_laevigata RLG00000035278
rosa_multiflora Rmu_sc0002983.1_g000041 Rmu_sc0034401.1_g000001
rosa_roxburghii Rroxscaffold_1G00021340
rosa_rugosa Rorug05G0320200
rosa_samantha Rh5BG397100 Rh5CG420800 Rh5DG413200
rosa_wichuraiana Rw5G036300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 285, 335
AclWI GGATC 2 cut(s) 155, 168
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 2 cut(s) 172, 270
AluBI AGCT 2 cut(s) 77, 230
AluI AGCT 2 cut(s) 77, 230
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 2 cut(s) 155, 168
ApeKI GCWGC 2 cut(s) 192, 212
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 220
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 108, 189
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 1 cut(s) 220
BamHI GGATCC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 2 cut(s) 179, 199
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 92
BisI GCNGC 2 cut(s) 193, 213
BlsI GCNGC 2 cut(s) 194, 214
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 98
BmuI ACTGGG 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 16
Bpu10I CCTNAGC 1 cut(s) 61
Bpu14I TTCGAA 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 2 cut(s) 104, 277
BseDI CCNNGG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 181
BseNI ACTGG 2 cut(s) 104, 277
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 2 cut(s) 179, 199
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 2 cut(s) 158, 189
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 92
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 2 cut(s) 285, 335
BspLI GGNNCC 1 cut(s) 162
BspPI GGATC 2 cut(s) 155, 168
BspT104I TTCGAA 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 92
BsrI ACTGG 2 cut(s) 104, 277
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 223
Bst6I CTCTTC 2 cut(s) 40, 207
BstBI TTCGAA 1 cut(s) 8
BstDEI CTNAG 1 cut(s) 61
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 179, 199
BstV2I GAAGAC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 111
CfoI GCGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 276
CviAII CATG 2 cut(s) 15, 299
CviJI RGCY 4 cut(s) 77, 92, 192, 230
CviKI_1 RGCY 4 cut(s) 77, 92, 192, 230
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 1 cut(s) 61
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eam1104I CTCTTC 2 cut(s) 40, 207
EarI CTCTTC 2 cut(s) 40, 207
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 2 cut(s) 18, 302
FaiI YATR 4 cut(s) 16, 96, 257, 300
FatI CATG 2 cut(s) 14, 298
Fnu4HI GCNGC 2 cut(s) 193, 213
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 2 cut(s) 193, 213
GlaI GCGC 1 cut(s) 66
GluI GCNGC 2 cut(s) 193, 213
HapII CCGG 2 cut(s) 158, 189
HhaI GCGC 1 cut(s) 67
Hin1II CATG 2 cut(s) 18, 302
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 2 cut(s) 185, 312
HpaII CCGG 2 cut(s) 158, 189
HphI GGTGA 2 cut(s) 108, 189
Hpy188I TCNGA 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 129
HpyCH4V TGCA 2 cut(s) 125, 215
HpyF3I CTNAG 1 cut(s) 61
Hsp92II CATG 2 cut(s) 18, 302
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 2 cut(s) 82, 227
LpnPI CCDG 6 cut(s) 117, 162, 171, 202, 230, 258
Lsp1109I GCAGC 2 cut(s) 179, 199
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 6 cut(s) 16, 19, 22, 27, 194, 305
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 3 cut(s) 29, 90, 210
MseI TTAA 1 cut(s) 47
MspI CCGG 2 cut(s) 158, 189
MspR9I CCNGG 1 cut(s) 158
NciI CCSGG 1 cut(s) 158
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 18, 302
NlaIV GGNNCC 1 cut(s) 162
NspI RCATGY 1 cut(s) 18
NspV TTCGAA 1 cut(s) 8
PfeI GAWTC 2 cut(s) 185, 312
PkrI GCNGC 2 cut(s) 194, 214
Psp124BI GAGCTC 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 220
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SacI GAGCTC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 2 cut(s) 193, 213
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 1 cut(s) 79
SetI ASST 5 cut(s) 79, 121, 202, 222, 232
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 1 cut(s) 220
Sse9I AATT 1 cut(s) 264
SsiI CCGC 2 cut(s) 285, 335
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 223
TaqI TCGA 1 cut(s) 8
TaqII GACCGA 1 cut(s) 87
TasI AATT 1 cut(s) 264
TfiI GAWTC 2 cut(s) 185, 312
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 1 cut(s) 111
TseI GCWGC 2 cut(s) 192, 212
TspRI CASTG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 220
XceI RCATGY 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.