Prupe.6G101500_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
7062625 .. 7063035
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G101500.1

Sequence Viewer

Length: 411 bp
ATGGTTTCTCTCTCTGTCATCTTCTTCTCTTCTCTGACCCTTCTCTCCATTGCCAGTGATGCAGAAGAAAGAGCCCCCCATGGCTTAGCCAGAGAAAACCCAATGGCTTTTCCACCATCAGCCTATAAATTTTTTCATCCAACCAACCAAAACCCTATTGCCAAAGACCCATGTAAGGCATCCAATTGCTCACCATTAATGCCTATAGCAGCCCAAGTGCAAGCAACTAAAGCACATGAAAGCAAAGTTTCTGCATCCCAGAATGGAAGGACCACATTGGGAGTTGGTGGAATTGCTGGCTTTGTGTTTGGTTTAGCATTTGCAGCCTTTGTGGCCATGGGTGTTTACTATGTACTTGTCTCACGTAGAGAAGATATGAGGAAAGCCAATACTGTTAAACCTGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.53

Weight (kDa)

9.3

Isoelectric Point (pI)

26.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28410
fragaria_vesca FvH4_3g32270
malus_domestica MD03G1117800.v1.1 MD11G1136100.v1.1
prunus_persica Prupe.6G101500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0059071
rosa_laevigata RLG00000035278
rosa_multiflora Rmu_sc0002983.1_g000041 Rmu_sc0034401.1_g000001
rosa_roxburghii Rroxscaffold_1G00021340
rosa_rugosa Rorug05G0320200
rosa_samantha Rh5BG397100 Rh5CG420800 Rh5DG413200
rosa_wichuraiana Rw5G036300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 1 cut(s) 128
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 364
AoxI GGCC 1 cut(s) 333
ApeKI GCWGC 2 cut(s) 209, 323
ApoI RAATTY 1 cut(s) 128
AseI ATTAAT 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 183
AvaII GGWCC 1 cut(s) 270
BalI TGGCCA 1 cut(s) 335
BanII GRGCYC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 221, 335
BccI CCATC 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 364
BfmI CTRYAG 1 cut(s) 204
BglI GCCNNNNNGGC 1 cut(s) 332
BisI GCNGC 2 cut(s) 210, 324
BlpI GCTNAGC 1 cut(s) 85
BlsI GCNGC 2 cut(s) 211, 325
Bme18I GGWCC 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 270
BmsI GCATC 3 cut(s) 49, 188, 263
Bpu1102I GCTNAGC 1 cut(s) 85
BsaAI YACGTR 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 79, 336
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 54
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 2 cut(s) 79, 336
BseGI GGATG 3 cut(s) 136, 179, 254
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMI GCAATG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 54
BseXI GCAGC 2 cut(s) 221, 335
BshFI GGCC 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 364
BsnI GGCC 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 76
Bsp1720I GCTNAGC 1 cut(s) 85
Bsp19I CCATGG 2 cut(s) 79, 336
BspANI GGCC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 2 cut(s) 79, 336
BssT1I CCWWGG 2 cut(s) 79, 336
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 34
BstBAI YACGTR 1 cut(s) 365
BstC8I GCNNGC 2 cut(s) 222, 298
BstDEI CTNAG 1 cut(s) 85
BstDSI CCRYGG 2 cut(s) 79, 336
BstF5I GGATG 3 cut(s) 136, 179, 254
BstMAI GTCTC 1 cut(s) 364
BstMWI GCNNNNNNNGC 4 cut(s) 59, 230, 323, 332
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 221, 335
BsuRI GGCC 1 cut(s) 335
BtgI CCRYGG 2 cut(s) 79, 336
BtsCI GGATG 3 cut(s) 136, 179, 254
BtsIMutI CAGTG 1 cut(s) 61
Cac8I GCNNGC 2 cut(s) 222, 298
Cfr13I GGNCC 1 cut(s) 270
Csp6I GTAC 1 cut(s) 353
CviAII CATG 4 cut(s) 80, 171, 236, 337
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 1 cut(s) 85
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Eco130I CCWWGG 2 cut(s) 79, 336
Eco24I GRGCYC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 270
EcoT14I CCWWGG 2 cut(s) 79, 336
EcoT38I GRGCYC 1 cut(s) 76
ErhI CCWWGG 2 cut(s) 79, 336
FaeI CATG 4 cut(s) 83, 174, 239, 340
FaiI YATR 9 cut(s) 81, 126, 172, 206, 237, 338, 351, 377, 409
FatI CATG 4 cut(s) 79, 170, 235, 336
Fnu4HI GCNGC 2 cut(s) 210, 324
FokI GGATG 3 cut(s) 123, 166, 241
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 2 cut(s) 210, 324
GluI GCNGC 2 cut(s) 210, 324
HaeIII GGCC 1 cut(s) 335
Hin1II CATG 4 cut(s) 83, 174, 239, 340
HphI GGTGA 1 cut(s) 183
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 1 cut(s) 36
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 50, 261
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 4 cut(s) 62, 220, 254, 323
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 230, 323, 332
HpyF3I CTNAG 1 cut(s) 85
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 4 cut(s) 83, 174, 239, 340
LpnPI CCDG 4 cut(s) 67, 103, 272, 282
Lsp1109I GCAGC 2 cut(s) 221, 335
LweI GCATC 3 cut(s) 49, 188, 263
MaeII ACGT 1 cut(s) 364
MboII GAAGA 5 cut(s) 13, 16, 21, 77, 383
MfeI CAATTG 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 76
MlsI TGGCCA 1 cut(s) 335
MluCI AATT 3 cut(s) 128, 184, 291
MluNI TGGCCA 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 1 cut(s) 372
Mox20I TGGCCA 1 cut(s) 335
MscI TGGCCA 1 cut(s) 335
MseI TTAA 2 cut(s) 197, 396
Msp20I TGGCCA 1 cut(s) 335
MunI CAATTG 1 cut(s) 184
MwoI GCNNNNNNNGC 4 cut(s) 59, 230, 323, 332
NcoI CCATGG 2 cut(s) 79, 336
NlaIII CATG 4 cut(s) 83, 174, 239, 340
PkrI GCNGC 2 cut(s) 211, 325
Ppu21I YACGTR 1 cut(s) 365
PshBI ATTAAT 1 cut(s) 197
PspPI GGNCC 1 cut(s) 270
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
SaqAI TTAA 2 cut(s) 197, 396
SatI GCNGC 2 cut(s) 210, 324
Sau96I GGNCC 1 cut(s) 270
SduI GDGCHC 1 cut(s) 76
SetI ASST 2 cut(s) 367, 403
SfaNI GCATC 3 cut(s) 49, 188, 263
SfcI CTRYAG 1 cut(s) 204
SinI GGWCC 1 cut(s) 270
Sse9I AATT 3 cut(s) 128, 184, 291
StyI CCWWGG 2 cut(s) 79, 336
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 1 cut(s) 367
TasI AATT 3 cut(s) 128, 184, 291
TatI WGTACW 1 cut(s) 352
Tru1I TTAA 2 cut(s) 197, 396
Tru9I TTAA 2 cut(s) 197, 396
TscAI CASTG 1 cut(s) 61
TseI GCWGC 2 cut(s) 209, 323
TspDTI ATGAA 2 cut(s) 125, 252
TspRI CASTG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 270
VspI ATTAAT 1 cut(s) 197
XapI RAATTY 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.