Rorug05G0320200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016145
Physical Location & Seq
Reverse (-)
37975917 .. 37977083
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0320200.1

Sequence Viewer

Length: 1167 bp
ATGGCTTCTTCTTCAATTTCTTGTTTCATGAGCCTGGAAGACCTTGATGTGGGGGTTGTGAAAACATTCCACCCCACTGATTCTGATTTAGTGGGAAGCTATCTCTACAACAGAATCAAATCCCCAACCCCAATTGGAGGAAAACAAACATTCCCTGAGATTGAAATATATGGCACCACAGGTTTACCCCTGTGGGATATATGGAGAATTTATGAGCCTTCCAAATTTCCACATCAAGATTATATCTATTTCTTCTCCCCGGTTAAGAAGTTGGGTTCTCGTTGTTTTCGCAGAATTGGCTGCGATGGGGGCACCTGGAGCGAGACTGAATCTGCTAAACCTATCTATGTCAGTGGAATTGAAGAGCCTTATGGGAAACTAAGGAAATTTAGATACAAAAACAACAAGGACAAAGGCTGTGAACACCATGTGGCTTGGTTGATGGATGAGTTTACCATCAACCAAGCACCCGATTTGGCTTTGTGCCGACTCAAACTCAATGACAGAGGAGGAGGAAGAAAAAAGAGGAAGAAGAGTTCTGATGAGACTAATGAGGATGAGAATCATAGAAAGACAATGTCTTTCAAAAACCGAAAACTTGAACCGAAAAGAGTTCAAGTTCAAAACAACATGTGTGAGCAACAAAAGGAAAGTGCCTCATTTAGTAGTACTAGCACTACACAGCAACTACCCCCACAATGTGATGATCATGATTACTGTGTGGATGAGAACCTAGTGTTCTCTCCAACTGGCTTGGTTGATGATTATCATGATTACTGTGTGGATGAGAACCTATTATTCTCTCCAACTGGCTTGGTTGATGATTATCATGACATTTTGAATAGTGATCAGTTTATGGCTTCTCTTGATCAATGGTATGAGGAACAACAACAACAGTTTCCGGATTCTTCACTACTAGTGCCGCAACAACAAGTAGAACCTAACAACAGTTGTGAGGAACAACAACAGCAACAAGATGAGCAGAAATTGCCGCCTTCTCCCTCTCTTGTTCACGAGCAGCAGCTCTGTGGTGGTTTTGATCTGATGCTTTATGGTTATCAGGACCCTGATATTGCACTCGATACTCCCTACTTACAGTCTGACGAATTTAATGGATTTGATCAAGATCAGCCTAAAGCACTGTATCAGTATTCTGACGTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

44.69

Weight (kDa)

4.72

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 22 - 152 1.9e-14 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28410
fragaria_vesca FvH4_3g32270
malus_domestica MD03G1117800.v1.1 MD11G1136100.v1.1
prunus_persica Prupe.6G101500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0059071
rosa_laevigata RLG00000035278
rosa_multiflora Rmu_sc0002983.1_g000041 Rmu_sc0034401.1_g000001
rosa_roxburghii Rroxscaffold_1G00021340
rosa_rugosa Rorug05G0320200
rosa_samantha Rh5BG397100 Rh5CG420800 Rh5DG413200
rosa_wichuraiana Rw5G036300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 173, 311
AccIII TCCGGA 1 cut(s) 901
AciI CCGC 2 cut(s) 923, 992
AcsI RAATTY 4 cut(s) 207, 224, 386, 1106
AdeI CACNNNGTG 2 cut(s) 430, 701
AfaI GTAC 1 cut(s) 670
AfiI CCNNNNNNNGG 2 cut(s) 49, 137
AflIII ACRYGT 1 cut(s) 630
AgsI TTSAA 8 cut(s) 15, 164, 362, 586, 602, 617, 623, 841
AhlI ACTAGT 1 cut(s) 916
AjnI CCWGG 2 cut(s) 33, 314
AloI GAACNNNNNNTCC 2 cut(s) 520, 552
AluBI AGCT 2 cut(s) 99, 1024
AluI AGCT 2 cut(s) 99, 1024
Alw26I GTCTC 2 cut(s) 317, 539
Aor13HI TCCGGA 1 cut(s) 901
ApeKI GCWGC 3 cut(s) 300, 1018, 1021
ApoI RAATTY 4 cut(s) 207, 224, 386, 1106
Asp700I GAANNNNTTC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 1063
AsuC2I CCSGG 1 cut(s) 260
AvaII GGWCC 1 cut(s) 1063
BaeGI GKGCMC 1 cut(s) 314
BanI GGYRCC 2 cut(s) 173, 311
BauI CACGAG 1 cut(s) 1013
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 3 cut(s) 287, 1030, 1033
BccI CCATC 3 cut(s) 299, 436, 464
BciT130I CCWGG 2 cut(s) 35, 316
BclI TGATCA 4 cut(s) 706, 847, 868, 1120
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 2 cut(s) 317, 539
BcuI ACTAGT 1 cut(s) 916
BfaI CTAG 3 cut(s) 672, 734, 917
BisI GCNGC 5 cut(s) 301, 923, 992, 1019, 1022
BlsI GCNGC 5 cut(s) 302, 924, 993, 1020, 1023
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 3 cut(s) 35, 260, 316
Bme18I GGWCC 1 cut(s) 1063
BmgT120I GGNCC 1 cut(s) 1063
BmiI GGNNCC 3 cut(s) 175, 313, 1065
BmrFI CCNGG 3 cut(s) 35, 260, 316
BmsI GCATC 1 cut(s) 1035
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 337
BpuMI CCSGG 1 cut(s) 260
BsaBI GATNNNNATC 4 cut(s) 561, 765, 825, 1125
BsaJI CCNNGG 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 901
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 137
Bse1I ACTGG 2 cut(s) 754, 814
Bse8I GATNNNNATC 4 cut(s) 561, 765, 825, 1125
BseAI TCCGGA 1 cut(s) 901
BseBI CCWGG 2 cut(s) 35, 316
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 4 cut(s) 451, 562, 730, 790
BseJI GATNNNNATC 4 cut(s) 561, 765, 825, 1125
BseLI CCNNNNNNNGG 2 cut(s) 49, 137
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 2 cut(s) 754, 814
BseRI GAGGAG 2 cut(s) 522, 525
BseSI GKGCMC 1 cut(s) 314
BseXI GCAGC 3 cut(s) 287, 1030, 1033
BshNI GGYRCC 2 cut(s) 173, 311
BsiSI CCGG 2 cut(s) 260, 902
BslI CCNNNNNNNGG 2 cut(s) 49, 137
BsmAI GTCTC 2 cut(s) 317, 539
Bsp1286I GDGCHC 1 cut(s) 314
Bsp13I TCCGGA 1 cut(s) 901
Bsp143I GATC 6 cut(s) 706, 847, 868, 1039, 1120, 1126
BspACI CCGC 2 cut(s) 923, 992
BspCNI CTCAG 1 cut(s) 148
BspEI TCCGGA 1 cut(s) 901
BspHI TCATGA 4 cut(s) 27, 709, 769, 829
BspLI GGNNCC 3 cut(s) 175, 313, 1065
BspQI GCTCTTC 1 cut(s) 357
BspT107I GGYRCC 2 cut(s) 173, 311
BsrI ACTGG 2 cut(s) 754, 814
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 6 cut(s) 706, 847, 868, 1039, 1120, 1126
BssSI CACGAG 1 cut(s) 1013
Bst2BI CACGAG 1 cut(s) 1013
Bst2UI CCWGG 2 cut(s) 35, 316
Bst4CI ACNGT 6 cut(s) 719, 779, 897, 950, 1098, 1143
Bst6I CTCTTC 2 cut(s) 357, 527
BstAPI GCANNNNNTGC 1 cut(s) 988
BstDEI CTNAG 2 cut(s) 156, 380
BstF5I GGATG 4 cut(s) 451, 562, 730, 790
BstKTI GATC 6 cut(s) 709, 850, 871, 1042, 1123, 1129
BstMAI GTCTC 2 cut(s) 317, 539
BstMBI GATC 6 cut(s) 706, 847, 868, 1039, 1120, 1126
BstMWI GCNNNNNNNGC 4 cut(s) 297, 309, 318, 988
BstNI CCWGG 2 cut(s) 35, 316
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 3 cut(s) 33, 258, 314
BstSLI GKGCMC 1 cut(s) 314
BstV1I GCAGC 3 cut(s) 287, 1030, 1033
BstV2I GAAGAC 1 cut(s) 45
BtgZI GCGATG 1 cut(s) 318
BtsCI GGATG 4 cut(s) 451, 562, 730, 790
BtsIMutI CAGTG 3 cut(s) 75, 358, 1139
CciI TCATGA 4 cut(s) 27, 709, 769, 829
Cfr13I GGNCC 1 cut(s) 1063
Csp6I GTAC 1 cut(s) 669
CviAII CATG 6 cut(s) 28, 428, 631, 710, 770, 830
CviQI GTAC 1 cut(s) 669
DdeI CTNAG 2 cut(s) 156, 380
DpnI GATC 6 cut(s) 708, 849, 870, 1041, 1122, 1128
DpnII GATC 6 cut(s) 706, 847, 868, 1039, 1120, 1126
DraIII CACNNNGTG 2 cut(s) 430, 701
Eam1104I CTCTTC 2 cut(s) 357, 527
EarI CTCTTC 2 cut(s) 357, 527
Eco47I GGWCC 1 cut(s) 1063
EcoO109I RGGNCCY 1 cut(s) 1063
EcoRII CCWGG 2 cut(s) 33, 314
FaeI CATG 6 cut(s) 31, 431, 634, 713, 773, 833
FatI CATG 6 cut(s) 27, 427, 630, 709, 769, 829
FbaI TGATCA 4 cut(s) 706, 847, 868, 1120
Fnu4HI GCNGC 5 cut(s) 301, 923, 992, 1019, 1022
FokI GGATG 4 cut(s) 458, 569, 737, 797
Fsp4HI GCNGC 5 cut(s) 301, 923, 992, 1019, 1022
FspBI CTAG 3 cut(s) 672, 734, 917
GluI GCNGC 5 cut(s) 301, 923, 992, 1019, 1022
GsuI CTGGAG 1 cut(s) 337
HapII CCGG 2 cut(s) 260, 902
Hin1II CATG 6 cut(s) 31, 431, 634, 713, 773, 833
HinfI GANTC 6 cut(s) 80, 114, 329, 489, 562, 905
HpaII CCGG 2 cut(s) 260, 902
Hpy166II GTNNAC 4 cut(s) 185, 422, 453, 1012
Hpy188I TCNGA 5 cut(s) 85, 541, 1044, 1102, 1156
Hpy8I GTNNAC 4 cut(s) 185, 422, 453, 1012
HpyAV CCTTC 2 cut(s) 228, 1005
HpyCH4III ACNGT 6 cut(s) 719, 779, 897, 950, 1098, 1143
HpyCH4IV ACGT 1 cut(s) 1158
HpyCH4V TGCA 1 cut(s) 1076
HpyF10VI GCNNNNNNNGC 4 cut(s) 297, 309, 318, 988
HpyF3I CTNAG 2 cut(s) 156, 380
HpySE526I ACGT 1 cut(s) 1158
Hsp92II CATG 6 cut(s) 31, 431, 634, 713, 773, 833
Kpn2I TCCGGA 1 cut(s) 901
Ksp22I TGATCA 4 cut(s) 706, 847, 868, 1120
Kzo9I GATC 6 cut(s) 706, 847, 868, 1039, 1120, 1126
LguI GCTCTTC 1 cut(s) 357
LmnI GCTCC 1 cut(s) 318
Lsp1109I GCAGC 3 cut(s) 287, 1030, 1033
LweI GCATC 1 cut(s) 1035
MaeI CTAG 3 cut(s) 672, 734, 917
MaeII ACGT 1 cut(s) 1158
MalI GATC 6 cut(s) 708, 849, 870, 1041, 1122, 1128
MboI GATC 6 cut(s) 706, 847, 868, 1039, 1120, 1126
MboII GAAGA 8 cut(s) 3, 50, 244, 374, 528, 541, 544, 900
MfeI CAATTG 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 9 cut(s) 15, 132, 207, 224, 294, 357, 386, 986, 1106
MlyI GAGTC 1 cut(s) 483
MmeI TCCRAC 2 cut(s) 770, 830
MroI TCCGGA 1 cut(s) 901
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 2 cut(s) 264, 1110
MspI CCGG 2 cut(s) 260, 902
MspR9I CCNGG 3 cut(s) 35, 260, 316
MunI CAATTG 1 cut(s) 132
MvaI CCWGG 2 cut(s) 35, 316
MwoI GCNNNNNNNGC 4 cut(s) 297, 309, 318, 988
NciI CCSGG 1 cut(s) 260
NdeII GATC 6 cut(s) 706, 847, 868, 1039, 1120, 1126
NlaIII CATG 6 cut(s) 31, 431, 634, 713, 773, 833
NlaIV GGNNCC 3 cut(s) 175, 313, 1065
NspI RCATGY 1 cut(s) 634
PagI TCATGA 4 cut(s) 27, 709, 769, 829
PciI ACATGT 1 cut(s) 630
PciSI GCTCTTC 1 cut(s) 357
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 5 cut(s) 80, 114, 329, 562, 905
PflFI GACNNNGTC 1 cut(s) 577
PkrI GCNGC 5 cut(s) 302, 924, 993, 1020, 1023
PleI GAGTC 1 cut(s) 483
PpsI GAGTC 1 cut(s) 483
PpuMI RGGWCCY 1 cut(s) 1063
PscI ACATGT 1 cut(s) 630
Psp5II RGGWCCY 1 cut(s) 1063
Psp6I CCWGG 2 cut(s) 33, 314
PspGI CCWGG 2 cut(s) 33, 314
PspN4I GGNNCC 3 cut(s) 175, 313, 1065
PspPI GGNCC 1 cut(s) 1063
PspPPI RGGWCCY 1 cut(s) 1063
PsyI GACNNNGTC 1 cut(s) 577
RsaI GTAC 1 cut(s) 670
RsaNI GTAC 1 cut(s) 669
SapI GCTCTTC 1 cut(s) 357
SaqAI TTAA 2 cut(s) 264, 1110
SatI GCNGC 5 cut(s) 301, 923, 992, 1019, 1022
Sau3AI GATC 6 cut(s) 706, 847, 868, 1039, 1120, 1126
Sau96I GGNCC 1 cut(s) 1063
ScaI AGTACT 1 cut(s) 670
SchI GAGTC 1 cut(s) 483
ScrFI CCNGG 3 cut(s) 35, 260, 316
SduI GDGCHC 1 cut(s) 314
SfaNI GCATC 1 cut(s) 1035
SinI GGWCC 1 cut(s) 1063
SpeI ACTAGT 1 cut(s) 916
Sse9I AATT 9 cut(s) 15, 132, 207, 224, 294, 357, 386, 986, 1106
SsiI CCGC 2 cut(s) 923, 992
SspMI CTAG 3 cut(s) 672, 734, 917
StyD4I CCNGG 3 cut(s) 33, 258, 314
TaaI ACNGT 6 cut(s) 719, 779, 897, 950, 1098, 1143
TaiI ACGT 1 cut(s) 1161
TaqI TCGA 1 cut(s) 1080
TasI AATT 9 cut(s) 15, 132, 207, 224, 294, 357, 386, 986, 1106
TatI WGTACW 1 cut(s) 668
TauI GCSGC 2 cut(s) 925, 994
TfiI GAWTC 5 cut(s) 80, 114, 329, 562, 905
Tru1I TTAA 2 cut(s) 264, 1110
Tru9I TTAA 2 cut(s) 264, 1110
TscAI CASTG 3 cut(s) 82, 358, 1146
TseI GCWGC 3 cut(s) 300, 1018, 1021
TspDTI ATGAA 1 cut(s) 16
TspRI CASTG 3 cut(s) 82, 358, 1146
Tth111I GACNNNGTC 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 1063
XapI RAATTY 4 cut(s) 207, 224, 386, 1106
XceI RCATGY 1 cut(s) 634
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 3 cut(s) 672, 734, 917
ZrmI AGTACT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.