Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009627

Physical Location & Seq

Genomic Coordinates Reverse (-)

12356321 .. 12359568

Gene Structure 3248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGCGAGAGTTCTAGTCTCGTCTCCATCTTCATTCTTCGGTTCACCGTTGATTAAACCGTCGTCATCTCTCCGTCACAGTGGAGTAGGAGGAGGAGGAACCGCTCAATTTCTTCCATACCGGAGTAATAATAACAAACTCTTCACTACTTCAACCACCGTACGATTCAGCTTAAACGAGATTCCTCCTTTCCATGGCTTGGATTCATCTGTAGACATCGGAGCGATTTTCACCAGAGCTGAATCTCTTCTCTATACAATAGCTGACGCCGCCGTTGTTGGTGCTGATTCCGTCGTAACTACTGATTCATCCGCCGTGCAGAAGAGTGGTGGTTGGTTTGGTTTTATCTCCGATGCTATGGAATTGGTTCTTAAGATTTTGAAGGATGGATTATCAGCGGTTCATGTACCTTATGCTTATGGATTTGCGATTATCTTGCTTACGATTATCGTCAAAGCAGCGACGTATCCTTTGACTAAGCAACAGGTTGAATCAACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGATTCAACAACGTTACGCAGGAAATCAGGAGAGGATACAACTAGAGACATCGCGATTGTATAAACAAGCTGGTGTTAATCCGTTGGCAGGTTGCTTACCAACTTTAGCAACCATACCAGTTTGGATTGGTTTATACCAAGCTCTCTCTAACGTGGCCAACGAGGGATTGTTTACAGAAGGTTTCTTTTGGATTCCATCTCTGGGTGGACCAACATCTATAGCTGCTCGGCAGAGTGGATCCGGCATTTCGTGGCTTTTTCCGTTTGTGGACGGGCATCCACCATTGGGATGGTATGACACTGTAGCTTATCTTGTTCTACCTGTTCTACTTATTGCCTCCCAGTATGTGTCAATGGAAATTATGAAGCCTCCTCAAACTGATGATCCTGCACAGAAGAATACGCTTCTTGTTTTCAAGTTTCTTCCACTCATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGGCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACTAGGTGGTGCAAAGCCAAATATGGATGAAAACGCAAGCAAAATAATAAGTGCGGGACGAGCAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAGATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGAACAAGGCGGTTGCGAAAGATACAGTTGAATTGGTAGAAGAATCTCAGTCTGAATCAGAAGAAGGGTCTGATGATGAGGAAGAAGAGGCTCGTGAAGGAGCGTTAGCTTCGAGCACAACAAGCAAGCCGCTTCCTGAGGTTGGCCAACGAAGAAGCAAAAGATCGAAGCGGAAACGCACTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019904 GO:0022607 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0050789 GO:0050793 GO:0050794 GO:0051179 GO:0051234 GO:0051259 GO:0051291 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0061024 GO:0065002 GO:0065003 GO:0065007 GO:0070206 GO:0070208 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0090150 GO:0090342

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

462

Amino Acids

50.24

Weight (kDa)

9.08

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
60KD_IMP	PF02096	140 - 354	5.9e-52	60Kd inner membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28800 AT2G28800 AT2G28800 AT2G28800
fragaria_vesca	FvH4_3g35720 FvH4_3g35720 FvH4_3g35720
malus_domestica	MD00G1137500.v1.1 MD11G1111800.v1.1
prunus_persica	Prupe.6G080200_v2.0.a1
pyrus_communis	pycom03g07940 pycom11g09240
rosa_chinensis	RchiOBHm_Chr5g0063871
rosa_laevigata	RLG00000035687
rosa_multiflora	Rmu_sc0000552.1_g000018
rosa_roxburghii	Rroxscaffold_1G00016910
rosa_rugosa	Rorug05G0360900
rosa_samantha	Rh5AG419300 Rh5BG435300 Rh5CG458400 Rh5DG448200
rosa_wichuraiana	Rw5G039400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	611
AccB7I	CCANNNNNTGG	1 cut(s)	199
AccBSI	CCGCTC	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	586
AciI	CCGC	9 cut(s)	102, 270, 312, 398, 1038, 1115, 1211, 1331, 1372
AclI	AACGTT	1 cut(s)	544
AclWI	GGATC	3 cut(s)	765, 778, 911
AcoI	YGGCCR	2 cut(s)	687, 1345
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	4 cut(s)	162, 408, 1029, 1036
AfiI	CCNNNNNNNGG	6 cut(s)	194, 199, 620, 734, 818, 1343
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	7 cut(s)	153, 382, 491, 518, 539, 949, 1232
AluBI	AGCT	8 cut(s)	171, 239, 263, 602, 674, 755, 839, 1310
AluI	AGCT	8 cut(s)	171, 239, 263, 602, 674, 755, 839, 1310
Alw21I	GWGCWC	1 cut(s)	1319
Alw26I	GTCTC	3 cut(s)	22, 27, 572
AlwI	GGATC	3 cut(s)	765, 778, 911
AoxI	GGCC	2 cut(s)	687, 1345
ApeKI	GCWGC	3 cut(s)	458, 755, 1194
ArsI	GACNNNNNNTTYG	2 cut(s)	454, 486
Asp700I	GAANNNNTTC	2 cut(s)	246, 366
AspLEI	GCGC	1 cut(s)	1194
AspS9I	GGNCC	1 cut(s)	740
AsuHPI	GGTGA	2 cut(s)	36, 223
AvaII	GGWCC	1 cut(s)	740
AxyI	CCTNAGG	1 cut(s)	1338
BalI	TGGCCA	2 cut(s)	689, 1347
BamHI	GGATCC	1 cut(s)	770
BauI	CACGAG	1 cut(s)	1293
Bbv12I	GWGCWC	1 cut(s)	1319
BbvI	GCAGC	3 cut(s)	470, 742, 1206
BccI	CCATC	5 cut(s)	34, 380, 736, 816, 1000
BceAI	ACGGC	2 cut(s)	257, 299
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BciVI	GTATCC	2 cut(s)	477, 561
BcoDI	GTCTC	3 cut(s)	22, 27, 572
BfaI	CTAG	4 cut(s)	14, 500, 575, 1064
BfmI	CTRYAG	3 cut(s)	210, 750, 834
BfrI	CTTAAG	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	611
BfuI	GTATCC	2 cut(s)	477, 561
BglII	AGATCT	1 cut(s)	1130
BisI	GCNGC	5 cut(s)	270, 459, 756, 1195, 1331
BlpI	GCTNAGC	1 cut(s)	1140
BlsI	GCNGC	5 cut(s)	271, 460, 757, 1196, 1332
Bme18I	GGWCC	1 cut(s)	740
BmgT120I	GGNCC	1 cut(s)	740
BmiI	GGNNCC	2 cut(s)	100, 772
BmrI	ACTGGG	1 cut(s)	868
BmsI	GCATC	4 cut(s)	343, 495, 817, 1141
BmuI	ACTGGG	1 cut(s)	868
Bpu1102I	GCTNAGC	1 cut(s)	1140
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	193
BsaWI	WCCGGW	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	6 cut(s)	194, 199, 620, 734, 818, 1343
Bse1I	ACTGG	3 cut(s)	650, 874, 1016
Bse21I	CCTNAGG	1 cut(s)	1338
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	5 cut(s)	308, 391, 808, 827, 1093
BseLI	CCNNNNNNNGG	6 cut(s)	194, 199, 620, 734, 818, 1343
BseMII	CTCAG	3 cut(s)	1154, 1262, 1329
BseNI	ACTGG	3 cut(s)	650, 874, 1016
BseRI	GAGGAG	3 cut(s)	105, 108, 894
BseXI	GCAGC	3 cut(s)	470, 742, 1206
BsgI	GTGCAG	2 cut(s)	338, 906
Bsh1236I	CGCG	1 cut(s)	586
BshFI	GGCC	2 cut(s)	689, 1347
BsiHKAI	GWGCWC	1 cut(s)	1319
BsiSI	CCGG	2 cut(s)	121, 774
BsiWI	CGTACG	1 cut(s)	160
BslFI	GGGAC	2 cut(s)	974, 1131
BslI	CCNNNNNNNGG	6 cut(s)	194, 199, 620, 734, 818, 1343
BsmAI	GTCTC	3 cut(s)	22, 27, 572
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	2 cut(s)	974, 1131
BsnI	GGCC	2 cut(s)	689, 1347
Bsp1286I	GDGCHC	1 cut(s)	1319
Bsp143I	GATC	5 cut(s)	770, 916, 966, 1130, 1364
Bsp1720I	GCTNAGC	1 cut(s)	1140
Bsp19I	CCATGG	1 cut(s)	193
Bsp68I	TCGCGA	1 cut(s)	586
BspACI	CCGC	9 cut(s)	102, 270, 312, 398, 1038, 1115, 1211, 1331, 1372
BspANI	GGCC	2 cut(s)	689, 1347
BspCNI	CTCAG	3 cut(s)	1153, 1261, 1330
BspFNI	CGCG	1 cut(s)	586
BspHI	TCATGA	1 cut(s)	963
BspLI	GGNNCC	2 cut(s)	100, 772
BspMI	ACCTGC	1 cut(s)	611
BspPI	GGATC	3 cut(s)	765, 778, 911
BspTI	CTTAAG	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	104
BsrI	ACTGG	3 cut(s)	650, 874, 1016
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	5 cut(s)	770, 916, 966, 1130, 1364
BssNI	GRCGYC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	1293
BssT1I	CCWWGG	1 cut(s)	193
Bst2BI	CACGAG	1 cut(s)	1293
Bst4CI	ACNGT	7 cut(s)	48, 60, 80, 160, 835, 1228, 1384
Bst6I	CTCTTC	4 cut(s)	146, 252, 317, 1281
BstACI	GRCGYC	1 cut(s)	267
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	3 cut(s)	1099, 1156, 1328
BstDEI	CTNAG	5 cut(s)	477, 1031, 1140, 1248, 1338
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	5 cut(s)	308, 391, 808, 827, 1093
BstFNI	CGCG	1 cut(s)	586
BstHHI	GCGC	1 cut(s)	1194
BstKTI	GATC	5 cut(s)	773, 919, 969, 1133, 1367
BstMAI	GTCTC	3 cut(s)	22, 27, 572
BstMBI	GATC	5 cut(s)	770, 916, 966, 1130, 1364
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 1121, 1189, 1323
BstSFI	CTRYAG	3 cut(s)	210, 750, 834
BstUI	CGCG	1 cut(s)	586
BstV1I	GCAGC	3 cut(s)	470, 742, 1206
BstX2I	RGATCY	2 cut(s)	770, 1130
BstXI	CCANNNNNNTGG	1 cut(s)	822
BstYI	RGATCY	2 cut(s)	770, 1130
Bsu36I	CCTNAGG	1 cut(s)	1338
BsuI	GTATCC	2 cut(s)	477, 561
BsuRI	GGCC	2 cut(s)	689, 1347
BtgI	CCRYGG	1 cut(s)	193
BtgZI	GCGATG	2 cut(s)	518, 567
BtsCI	GGATG	5 cut(s)	308, 391, 808, 827, 1093
BtsIMutI	CAGTG	3 cut(s)	85, 831, 1380
BtuMI	TCGCGA	1 cut(s)	586
BveI	ACCTGC	1 cut(s)	611
Cac8I	GCNNGC	3 cut(s)	1099, 1156, 1328
CciI	TCATGA	1 cut(s)	963
CfoI	GCGC	1 cut(s)	1194
Cfr13I	GGNCC	1 cut(s)	740
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	4 cut(s)	161, 407, 1028, 1035
CviAII	CATG	3 cut(s)	194, 404, 964
CviQI	GTAC	4 cut(s)	161, 407, 1028, 1035
DdeI	CTNAG	5 cut(s)	477, 1031, 1140, 1248, 1338
DpnI	GATC	5 cut(s)	772, 918, 968, 1132, 1366
DpnII	GATC	5 cut(s)	770, 916, 966, 1130, 1364
EaeI	YGGCCR	2 cut(s)	687, 1345
Eam1104I	CTCTTC	4 cut(s)	146, 252, 317, 1281
EarI	CTCTTC	4 cut(s)	146, 252, 317, 1281
EciI	GGCGGA	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	740
Eco81I	CCTNAGG	1 cut(s)	1338
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	3 cut(s)	197, 407, 967
FaqI	GGGAC	2 cut(s)	974, 1131
FatI	CATG	3 cut(s)	193, 403, 963
FauI	CCCGC	1 cut(s)	1108
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	5 cut(s)	270, 459, 756, 1195, 1331
FokI	GGATG	5 cut(s)	295, 398, 795, 834, 1100
Fsp4HI	GCNGC	5 cut(s)	270, 459, 756, 1195, 1331
FspBI	CTAG	4 cut(s)	14, 500, 575, 1064
GlaI	GCGC	1 cut(s)	1193
GluI	GCNGC	5 cut(s)	270, 459, 756, 1195, 1331
HaeIII	GGCC	2 cut(s)	689, 1347
HapII	CCGG	2 cut(s)	121, 774
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	1 cut(s)	1194
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	3 cut(s)	197, 407, 967
Hin6I	GCGC	1 cut(s)	1192
HinP1I	GCGC	1 cut(s)	1192
HpaII	CCGG	2 cut(s)	121, 774
HphI	GGTGA	2 cut(s)	36, 223
Hpy166II	GTNNAC	6 cut(s)	44, 214, 705, 740, 802, 1061
Hpy188I	TCNGA	5 cut(s)	221, 352, 1255, 1261, 1273
Hpy188III	TCNNGA	6 cut(s)	560, 585, 964, 996, 1295, 1337
Hpy8I	GTNNAC	6 cut(s)	44, 214, 705, 740, 802, 1061
Hpy99I	CGWCG	3 cut(s)	64, 296, 466
HpyAV	CCTTC	4 cut(s)	376, 704, 1259, 1292
HpyCH4III	ACNGT	7 cut(s)	48, 60, 80, 160, 835, 1228, 1384
HpyCH4IV	ACGT	3 cut(s)	464, 544, 684
HpyCH4V	TGCA	5 cut(s)	319, 508, 923, 980, 1073
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 1121, 1189, 1323
HpyF3I	CTNAG	5 cut(s)	477, 1031, 1140, 1248, 1338
HpySE526I	ACGT	3 cut(s)	464, 544, 684
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	3 cut(s)	197, 407, 967
HspAI	GCGC	1 cut(s)	1192
Kzo9I	GATC	5 cut(s)	770, 916, 966, 1130, 1364
LmnI	GCTCC	2 cut(s)	221, 1301
Lsp1109I	GCAGC	3 cut(s)	470, 742, 1206
LweI	GCATC	4 cut(s)	343, 495, 817, 1141
MaeI	CTAG	4 cut(s)	14, 500, 575, 1064
MaeII	ACGT	3 cut(s)	464, 544, 684
MaeIII	GTNAC	4 cut(s)	74, 295, 545, 971
MalI	GATC	5 cut(s)	772, 918, 968, 1132, 1366
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	5 cut(s)	770, 916, 966, 1130, 1364
MflI	RGATCY	2 cut(s)	770, 1130
MhlI	GDGCHC	1 cut(s)	1319
MlsI	TGGCCA	2 cut(s)	689, 1347
MluCI	AATT	5 cut(s)	107, 362, 891, 1172, 1232
MluNI	TGGCCA	2 cut(s)	689, 1347
Mox20I	TGGCCA	2 cut(s)	689, 1347
MroXI	GAANNNNTTC	2 cut(s)	246, 366
MscI	TGGCCA	2 cut(s)	689, 1347
MseI	TTAA	5 cut(s)	54, 173, 372, 609, 1175
MslI	CAYNNNNRTG	1 cut(s)	820
Msp20I	TGGCCA	2 cut(s)	689, 1347
MspA1I	CMGCKG	1 cut(s)	398
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	2 cut(s)	121, 774
MvnI	CGCG	1 cut(s)	586
MwoI	GCNNNNNNNGC	4 cut(s)	269, 1121, 1189, 1323
NcoI	CCATGG	1 cut(s)	193
NdeII	GATC	5 cut(s)	770, 916, 966, 1130, 1364
NlaIII	CATG	3 cut(s)	197, 407, 967
NlaIV	GGNNCC	2 cut(s)	100, 772
NmeAIII	GCCGAG	1 cut(s)	739
NmuCI	GTSAC	1 cut(s)	74
NruI	TCGCGA	1 cut(s)	586
PagI	TCATGA	1 cut(s)	963
PcsI	WCGNNNNNNNCGW	2 cut(s)	690, 1155
PdmI	GAANNNNTTC	2 cut(s)	246, 366
Pfl23II	CGTACG	1 cut(s)	160
PflMI	CCANNNNNTGG	1 cut(s)	199
PkrI	GCNGC	5 cut(s)	271, 460, 757, 1196, 1332
Psp1406I	AACGTT	1 cut(s)	544
PspLI	CGTACG	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	100, 772
PspPI	GGNCC	1 cut(s)	740
PsuI	RGATCY	2 cut(s)	770, 1130
RruI	TCGCGA	1 cut(s)	586
RsaI	GTAC	4 cut(s)	162, 408, 1029, 1036
RsaNI	GTAC	4 cut(s)	161, 407, 1028, 1035
RseI	CAYNNNNRTG	1 cut(s)	820
SaqAI	TTAA	5 cut(s)	54, 173, 372, 609, 1175
SatI	GCNGC	5 cut(s)	270, 459, 756, 1195, 1331
Sau3AI	GATC	5 cut(s)	770, 916, 966, 1130, 1364
Sau96I	GGNCC	1 cut(s)	740
SduI	GDGCHC	1 cut(s)	1319
SfaNI	GCATC	4 cut(s)	343, 495, 817, 1141
SfcI	CTRYAG	3 cut(s)	210, 750, 834
SinI	GGWCC	1 cut(s)	740
SmiMI	CAYNNNNRTG	1 cut(s)	820
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	5 cut(s)	107, 362, 891, 1172, 1232
SsiI	CCGC	9 cut(s)	102, 270, 312, 398, 1038, 1115, 1211, 1331, 1372
SspMI	CTAG	4 cut(s)	14, 500, 575, 1064
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	7 cut(s)	48, 60, 80, 160, 835, 1228, 1384
TaiI	ACGT	3 cut(s)	467, 547, 687
TaqI	TCGA	2 cut(s)	1313, 1367
TasI	AATT	5 cut(s)	107, 362, 891, 1172, 1232
TatI	WGTACW	1 cut(s)	1027
TauI	GCSGC	2 cut(s)	272, 1333
Tru1I	TTAA	5 cut(s)	54, 173, 372, 609, 1175
Tru9I	TTAA	5 cut(s)	54, 173, 372, 609, 1175
TscAI	CASTG	3 cut(s)	85, 838, 1387
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	3 cut(s)	458, 755, 1194
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	6 cut(s)	21, 195, 297, 392, 911, 1104
TspGWI	ACGGA	4 cut(s)	62, 280, 603, 783
TspRI	CASTG	3 cut(s)	85, 838, 1387
Van91I	CCANNNNNTGG	1 cut(s)	199
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	740
XcmI	CCANNNNNNNNNTGG	1 cut(s)	819
XmiI	GTMKAC	1 cut(s)	213
XmnI	GAANNNNTTC	2 cut(s)	246, 366
XspI	CTAG	4 cut(s)	14, 500, 575, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.