MD00G1137500.v1.1

Inner membrane protein PPF-1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
29811937 .. 29818247
6311 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1137500.v1.1.491

Sequence Viewer

Length: 1338 bp
ATGGCGAAGACTCTCATCTCATCCACACCGTTCGTCGGCACATCTCTGCCGTCTGTCTCCCTCCGTGGGTCCTACACTCTCCCCTACCGCAGCAACGGACTCGCCACCACCAGAATCAGGTTCAGCCTCCACGACTCCGTTCCTCCGATTAATCCCTTCGACCACTCCCCCGTCGACGTCGCCTCGCTTTTGAGCCGCGCCGAGGGGCTTCTTTACACGATTGCCGACGCCGCCGTCGCCGTCGACCCGAGCTCCGCCGATGCTGCAGCTCAGAAGAATGGCGGGTGGTTCGGCTTCATCTCCGACGCCATGGAGTTCGTGCTCAAGATTTTGAAAGGCGGGCTCGATGCCGTGCACGTTCCGTATTCATACGGTTTTGCAATTATACTGCTTACGGTTATCGTTAAACTTGCCACACTGCCTCTCACAAAGCAACAGGTGGAATCGACGTTAGCGATGCAAAACCTTCAACCAAAACTTAAAGCCATACAAAAAAGATATGAGGGCAATACGGAAAGAATACAACTTGAGACATCACGGCTGTATCGGCAGGCAGGGATTAATCCATTGGCAGGGTGTTTACCAACTTTGGCCACAATACCGGTTTGGATAGGTCTATATCAAGCTCTTTCAAATGTGGCAAATGAGGGATTGTTGACAGAAGGTTTCTTTTGGATCCCCTCTTTGGGTGGCCCAACATCAATTGCTGCTCGACAAAGTGGTTCTGGCATTTCGTGGCTGTTTCCATTTGTGGATGGACATCCACCATTGGGCTGGTCTGACACTGCAGCATACCTTGTTTTGCCTGTCCTCCTTGTTGCTTCTCAGTATGTTTCAATGGAGATCATGAAGCCTCCACAGACTGATGATCCAGCTCAAAAAAACACACTTCTTGTATTCAAGTTTCTTCCCCTCATGATTGGTTACTTCTCCTTGTCTGTTCCTTCAGGATTGTCAATTTACTGGTTCACAAACAATATCCTCAGCACAGCACAACAAGTATGGCTGCGCAGATTAGGAGGTGCAAAGCCTGCTGTGAATGAGAATGCAAGTGGAATCATTACAGCAGGACGTGCAAAGCGATCAGATTCTCAGCCAGTAGAGGCTGGCAGTAGATTTAGGAAGTTAAGAGAAGAAGAGAGAAAGAAACAATTGAGCAAGGCGTTAACAAATGAAGAGGTTCAGACTTCTGATTCTGAAGTTGGTCCAAATGAAGAAAGCAATGACAAGGGTGAGGAGGTTCTAGAAGAGGTGTATGGTTCTGGTGTTGGAAAGGAGCTTCCAAATGATCCTCGACCAAGGAGAAGCAAGCGATCTAAAAGGAAGCGTGCTGTATAA

Protein Analysis

446

Amino Acids

48.49

Weight (kDa)

9.24

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
60KD_IMP PF02096 124 - 338 2.4e-51 60Kd inner membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009627)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AatII GACGTC 1 cut(s) 180
Acc16I TGCGCA 1 cut(s) 1010
AccI GTMKAC 2 cut(s) 174, 243
AccII CGCG 1 cut(s) 198
AciI CCGC 6 cut(s) 88, 196, 231, 255, 282, 339
AclWI GGATC 4 cut(s) 670, 683, 863, 1283
AcoI YGGCCR 1 cut(s) 591
AcuI CTGAAG 2 cut(s) 930, 1218
AcyI GRCGYC 3 cut(s) 177, 228, 306
AfiI CCNNNNNNNGG 8 cut(s) 35, 66, 117, 202, 572, 685, 686, 770
AgeI ACCGGT 1 cut(s) 601
AgsI TTSAA 5 cut(s) 334, 470, 633, 837, 901
AjiI CACGTC 1 cut(s) 1073
AluBI AGCT 5 cut(s) 252, 269, 626, 875, 1279
AluI AGCT 5 cut(s) 252, 269, 626, 875, 1279
Alw21I GWGCWC 3 cut(s) 254, 324, 357
Alw26I GTCTC 2 cut(s) 61, 524
Alw44I GTGCAC 1 cut(s) 353
AlwI GGATC 4 cut(s) 670, 683, 863, 1283
Ama87I CYCGRG 1 cut(s) 247
AoxI GGCC 2 cut(s) 591, 691
ApaLI GTGCAC 1 cut(s) 353
ApeKI GCWGC 6 cut(s) 90, 263, 266, 707, 788, 1006
AseI ATTAAT 2 cut(s) 150, 561
AsiGI ACCGGT 1 cut(s) 601
Asp700I GAANNNNTTC 1 cut(s) 1179
AspLEI GCGC 2 cut(s) 200, 1011
AspS9I GGNCC 3 cut(s) 69, 692, 1205
AsuHPI GGTGA 1 cut(s) 1244
AvaI CYCGRG 1 cut(s) 247
AvaII GGWCC 2 cut(s) 69, 1205
BaeGI GKGCMC 1 cut(s) 357
BaeI ACNNNNGTAYC 2 cut(s) 527, 560
BalI TGGCCA 1 cut(s) 593
BamHI GGATCC 1 cut(s) 675
BanII GRGCYC 2 cut(s) 254, 345
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 3 cut(s) 254, 324, 357
BbvCI CCTCAGC 1 cut(s) 983
BbvI GCAGC 6 cut(s) 102, 250, 278, 694, 800, 993
BccI CCATC 1 cut(s) 749
BceAI ACGGC 5 cut(s) 34, 218, 224, 335, 554
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BcoDI GTCTC 2 cut(s) 61, 524
BfaI CTAG 1 cut(s) 1244
BfmI CTRYAG 2 cut(s) 264, 786
BisI GCNGC 8 cut(s) 91, 196, 231, 264, 267, 708, 789, 1007
BlsI GCNGC 8 cut(s) 92, 197, 232, 265, 268, 709, 790, 1008
Bme18I GGWCC 2 cut(s) 69, 1205
BmeT110I CYCGRG 1 cut(s) 247
BmgBI CACGTC 1 cut(s) 1073
BmgT120I GGNCC 3 cut(s) 69, 692, 1205
BmiI GGNNCC 2 cut(s) 70, 677
BmsI GCATC 3 cut(s) 250, 337, 447
BpiI GAAGAC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 983
BpuEI CTTGAG 2 cut(s) 308, 548
BsaBI GATNNNNATC 1 cut(s) 759
BsaHI GRCGYC 3 cut(s) 177, 228, 306
BsaJI CCNNGG 4 cut(s) 64, 201, 309, 1298
BsaWI WCCGGW 1 cut(s) 601
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 8 cut(s) 35, 66, 117, 202, 572, 685, 686, 770
Bse118I RCCGGY 1 cut(s) 601
Bse1I ACTGG 2 cut(s) 968, 1097
Bse3DI GCAATG 1 cut(s) 1228
Bse8I GATNNNNATC 1 cut(s) 759
BseDI CCNNGG 4 cut(s) 64, 201, 309, 1298
BseGI GGATG 3 cut(s) 20, 760, 760
BseJI GATNNNNATC 1 cut(s) 759
BseLI CCNNNNNNNGG 8 cut(s) 35, 66, 117, 202, 572, 685, 686, 770
BseMI GCAATG 1 cut(s) 1228
BseMII CTCAG 4 cut(s) 284, 839, 997, 1106
BseNI ACTGG 2 cut(s) 968, 1097
BseRI GAGGAG 1 cut(s) 1250
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 6 cut(s) 102, 250, 278, 694, 800, 993
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 2 cut(s) 593, 693
BshTI ACCGGT 1 cut(s) 601
BsiHKAI GWGCWC 3 cut(s) 254, 324, 357
BsiHKCI CYCGRG 1 cut(s) 247
BsiSI CCGG 1 cut(s) 602
BslI CCNNNNNNNGG 8 cut(s) 35, 66, 117, 202, 572, 685, 686, 770
BsmAI GTCTC 2 cut(s) 61, 524
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 2 cut(s) 593, 693
BsoBI CYCGRG 1 cut(s) 247
Bsp1286I GDGCHC 4 cut(s) 254, 324, 345, 357
Bsp143I GATC 6 cut(s) 675, 843, 868, 1082, 1288, 1313
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 6 cut(s) 88, 196, 231, 255, 282, 339
BspANI GGCC 2 cut(s) 593, 693
BspCNI CTCAG 4 cut(s) 283, 838, 996, 1105
BspFNI CGCG 1 cut(s) 198
BspHI TCATGA 2 cut(s) 846, 915
BspLI GGNNCC 2 cut(s) 70, 677
BspMAI CTGCAG 2 cut(s) 268, 790
BspPI GGATC 4 cut(s) 670, 683, 863, 1283
BsrDI GCAATG 1 cut(s) 1228
BsrFI RCCGGY 1 cut(s) 601
BsrI ACTGG 2 cut(s) 968, 1097
BssAI RCCGGY 1 cut(s) 601
BssECI CCNNGG 4 cut(s) 64, 201, 309, 1298
BssMI GATC 6 cut(s) 675, 843, 868, 1082, 1288, 1313
BssNI GRCGYC 3 cut(s) 177, 228, 306
BssT1I CCWWGG 2 cut(s) 309, 1298
Bst4CI ACNGT 3 cut(s) 30, 374, 397
Bst6I CTCTTC 3 cut(s) 1131, 1170, 1242
BstACI GRCGYC 3 cut(s) 177, 228, 306
BstAPI GCANNNNNTGC 2 cut(s) 1031, 1073
BstC8I GCNNGC 6 cut(s) 341, 552, 1032, 1108, 1310, 1329
BstDEI CTNAG 4 cut(s) 270, 825, 983, 1092
BstDSI CCRYGG 2 cut(s) 64, 309
BstF5I GGATG 3 cut(s) 20, 760, 760
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 2 cut(s) 200, 1011
BstKTI GATC 6 cut(s) 678, 846, 871, 1085, 1291, 1316
BstMAI GTCTC 2 cut(s) 61, 524
BstMBI GATC 6 cut(s) 675, 843, 868, 1082, 1288, 1313
BstMWI GCNNNNNNNGC 6 cut(s) 230, 236, 263, 547, 1031, 1073
BstSFI CTRYAG 2 cut(s) 264, 786
BstSLI GKGCMC 1 cut(s) 357
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 6 cut(s) 102, 250, 278, 694, 800, 993
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 675
BstXI CCANNNNNNTGG 1 cut(s) 774
BstYI RGATCY 1 cut(s) 675
BsuRI GGCC 2 cut(s) 593, 693
BtgI CCRYGG 2 cut(s) 64, 309
BtgZI GCGATG 1 cut(s) 470
BtrI CACGTC 1 cut(s) 1073
BtsCI GGATG 3 cut(s) 20, 760, 760
BtsI GCAGTG 2 cut(s) 416, 783
BtsIMutI CAGTG 2 cut(s) 416, 783
Cac8I GCNNGC 6 cut(s) 341, 552, 1032, 1108, 1310, 1329
CciI TCATGA 2 cut(s) 846, 915
CfoI GCGC 2 cut(s) 200, 1011
Cfr10I RCCGGY 1 cut(s) 601
Cfr13I GGNCC 3 cut(s) 69, 692, 1205
CseI GACGC 2 cut(s) 236, 314
CspAI ACCGGT 1 cut(s) 601
CviAII CATG 3 cut(s) 310, 847, 916
DdeI CTNAG 4 cut(s) 270, 825, 983, 1092
DpnI GATC 6 cut(s) 677, 845, 870, 1084, 1290, 1315
DpnII GATC 6 cut(s) 675, 843, 868, 1082, 1288, 1313
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 591
Eam1104I CTCTTC 3 cut(s) 1131, 1170, 1242
EarI CTCTTC 3 cut(s) 1131, 1170, 1242
EciI GGCGGA 1 cut(s) 244
Ecl136II GAGCTC 1 cut(s) 252
Eco130I CCWWGG 2 cut(s) 309, 1298
Eco24I GRGCYC 2 cut(s) 254, 345
Eco47I GGWCC 2 cut(s) 69, 1205
Eco53kI GAGCTC 1 cut(s) 252
Eco57I CTGAAG 2 cut(s) 930, 1218
Eco88I CYCGRG 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 252
EcoO109I RGGNCCY 1 cut(s) 69
EcoT14I CCWWGG 2 cut(s) 309, 1298
EcoT38I GRGCYC 2 cut(s) 254, 345
ErhI CCWWGG 2 cut(s) 309, 1298
FaeI CATG 3 cut(s) 313, 850, 919
FatI CATG 3 cut(s) 309, 846, 915
FauI CCCGC 2 cut(s) 275, 332
FblI GTMKAC 2 cut(s) 174, 243
Fnu4HI GCNGC 8 cut(s) 91, 196, 231, 264, 267, 708, 789, 1007
FokI GGATG 3 cut(s) 7, 747, 767
FriOI GRGCYC 2 cut(s) 254, 345
Fsp4HI GCNGC 8 cut(s) 91, 196, 231, 264, 267, 708, 789, 1007
FspBI CTAG 1 cut(s) 1244
FspI TGCGCA 1 cut(s) 1010
GlaI GCGC 2 cut(s) 199, 1010
GluI GCNGC 8 cut(s) 91, 196, 231, 264, 267, 708, 789, 1007
HaeIII GGCC 2 cut(s) 593, 693
HapII CCGG 1 cut(s) 602
HgaI GACGC 2 cut(s) 236, 314
HhaI GCGC 2 cut(s) 200, 1011
Hin1I GRCGYC 3 cut(s) 177, 228, 306
Hin1II CATG 3 cut(s) 313, 850, 919
Hin6I GCGC 2 cut(s) 198, 1009
HinP1I GCGC 2 cut(s) 198, 1009
HincII GTYRAC 4 cut(s) 175, 244, 657, 1167
HindII GTYRAC 4 cut(s) 175, 244, 657, 1167
HinfI GANTC 8 cut(s) 10, 99, 114, 134, 443, 1056, 1088, 1193
HpaI GTTAAC 1 cut(s) 1167
HpaII CCGG 1 cut(s) 602
HphI GGTGA 1 cut(s) 1244
Hpy166II GTNNAC 7 cut(s) 175, 244, 355, 581, 657, 969, 1167
Hpy188I TCNGA 8 cut(s) 147, 273, 304, 781, 1087, 1185, 1192, 1198
Hpy188III TCNNGA 5 cut(s) 325, 847, 916, 948, 1244
Hpy8I GTNNAC 7 cut(s) 175, 244, 355, 581, 657, 969, 1167
Hpy99I CGWCG 9 cut(s) 38, 176, 179, 182, 230, 239, 245, 308, 451
HpyAV CCTTC 4 cut(s) 166, 476, 656, 954
HpyCH4III ACNGT 3 cut(s) 30, 374, 397
HpyCH4IV ACGT 4 cut(s) 177, 357, 449, 1072
HpyCH4V TGCA 8 cut(s) 266, 355, 380, 460, 788, 1025, 1049, 1076
HpyF10VI GCNNNNNNNGC 6 cut(s) 230, 236, 263, 547, 1031, 1073
HpyF3I CTNAG 4 cut(s) 270, 825, 983, 1092
HpySE526I ACGT 4 cut(s) 177, 357, 449, 1072
Hsp92I GRCGYC 3 cut(s) 177, 228, 306
Hsp92II CATG 3 cut(s) 313, 850, 919
HspAI GCGC 2 cut(s) 198, 1009
KspAI GTTAAC 1 cut(s) 1167
Kzo9I GATC 6 cut(s) 675, 843, 868, 1082, 1288, 1313
LmnI GCTCC 2 cut(s) 257, 1276
Lsp1109I GCAGC 6 cut(s) 102, 250, 278, 694, 800, 993
LweI GCATC 3 cut(s) 250, 337, 447
MaeI CTAG 1 cut(s) 1244
MaeII ACGT 4 cut(s) 177, 357, 449, 1072
MaeIII GTNAC 1 cut(s) 923
MalI GATC 6 cut(s) 677, 845, 870, 1084, 1290, 1315
MboI GATC 6 cut(s) 675, 843, 868, 1082, 1288, 1313
MboII GAAGA 8 cut(s) 19, 286, 899, 1145, 1148, 1187, 1226, 1259
MfeI CAATTG 2 cut(s) 702, 1151
MflI RGATCY 1 cut(s) 675
MhlI GDGCHC 4 cut(s) 254, 324, 345, 357
MlsI TGGCCA 1 cut(s) 593
MluCI AATT 4 cut(s) 381, 702, 957, 1151
MluNI TGGCCA 1 cut(s) 593
MlyI GAGTC 3 cut(s) 4, 93, 128
MmeI TCCRAC 2 cut(s) 327, 1249
Mox20I TGGCCA 1 cut(s) 593
MroXI GAANNNNTTC 1 cut(s) 1179
MscI TGGCCA 1 cut(s) 593
MseI TTAA 6 cut(s) 150, 405, 480, 561, 1127, 1166
Msp20I TGGCCA 1 cut(s) 593
MspI CCGG 1 cut(s) 602
MunI CAATTG 2 cut(s) 702, 1151
Mva1269I GAATGC 1 cut(s) 1051
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 6 cut(s) 230, 236, 263, 547, 1031, 1073
NcoI CCATGG 1 cut(s) 309
NdeII GATC 6 cut(s) 675, 843, 868, 1082, 1288, 1313
NlaIII CATG 3 cut(s) 313, 850, 919
NlaIV GGNNCC 2 cut(s) 70, 677
NmeAIII GCCGAG 1 cut(s) 226
NsbI TGCGCA 1 cut(s) 1010
PagI TCATGA 2 cut(s) 846, 915
PcsI WCGNNNNNNNCGW 2 cut(s) 452, 1078
PctI GAATGC 1 cut(s) 1051
PdmI GAANNNNTTC 1 cut(s) 1179
PfeI GAWTC 5 cut(s) 114, 443, 1056, 1088, 1193
PinAI ACCGGT 1 cut(s) 601
PkrI GCNGC 8 cut(s) 92, 197, 232, 265, 268, 709, 790, 1008
PleI GAGTC 3 cut(s) 4, 93, 128
PpsI GAGTC 3 cut(s) 4, 93, 128
PpuMI RGGWCCY 1 cut(s) 69
PshBI ATTAAT 2 cut(s) 150, 561
Psp124BI GAGCTC 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 70, 677
PspPI GGNCC 3 cut(s) 69, 692, 1205
PspPPI RGGWCCY 1 cut(s) 69
PstI CTGCAG 2 cut(s) 268, 790
PsuI RGATCY 1 cut(s) 675
SacI GAGCTC 1 cut(s) 254
SalI GTCGAC 2 cut(s) 173, 242
SaqAI TTAA 6 cut(s) 150, 405, 480, 561, 1127, 1166
SatI GCNGC 8 cut(s) 91, 196, 231, 264, 267, 708, 789, 1007
Sau3AI GATC 6 cut(s) 675, 843, 868, 1082, 1288, 1313
Sau96I GGNCC 3 cut(s) 69, 692, 1205
SchI GAGTC 3 cut(s) 4, 93, 128
SduI GDGCHC 4 cut(s) 254, 324, 345, 357
SfaNI GCATC 3 cut(s) 250, 337, 447
SfcI CTRYAG 2 cut(s) 264, 786
SgrDI CGTCGACG 1 cut(s) 173
SinI GGWCC 2 cut(s) 69, 1205
SmlI CTYRAG 2 cut(s) 323, 527
SmoI CTYRAG 2 cut(s) 323, 527
Sse9I AATT 4 cut(s) 381, 702, 957, 1151
SsiI CCGC 6 cut(s) 88, 196, 231, 255, 282, 339
SspMI CTAG 1 cut(s) 1244
SstI GAGCTC 1 cut(s) 254
StyI CCWWGG 2 cut(s) 309, 1298
TaaI ACNGT 3 cut(s) 30, 374, 397
TaiI ACGT 4 cut(s) 180, 360, 452, 1075
TaqI TCGA 7 cut(s) 159, 174, 243, 345, 446, 712, 1294
TasI AATT 4 cut(s) 381, 702, 957, 1151
TauI GCSGC 2 cut(s) 198, 233
TfiI GAWTC 5 cut(s) 114, 443, 1056, 1088, 1193
Tru1I TTAA 6 cut(s) 150, 405, 480, 561, 1127, 1166
Tru9I TTAA 6 cut(s) 150, 405, 480, 561, 1127, 1166
TscAI CASTG 2 cut(s) 423, 790
TseI GCWGC 6 cut(s) 90, 263, 266, 707, 788, 1006
TspDTI ATGAA 5 cut(s) 286, 357, 863, 1188, 1227
TspGWI ACGGA 5 cut(s) 53, 111, 127, 351, 527
TspRI CASTG 2 cut(s) 423, 790
VneI GTGCAC 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 69, 1205
VspI ATTAAT 2 cut(s) 150, 561
XbaI TCTAGA 1 cut(s) 1243
XcmI CCANNNNNNNNNTGG 1 cut(s) 771
XmiI GTMKAC 2 cut(s) 174, 243
XmnI GAANNNNTTC 1 cut(s) 1179
XspI CTAG 1 cut(s) 1244
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.