AT2G28940

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014119
Physical Location & Seq
Reverse (-)
12426710 .. 12428737
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28940.2

Sequence Viewer

Length: 1032 bp
ATGTTTCAGACTCTAATGGTTTTGATTCGAAGATTAATGTTGCTGTTAAACAGCTTAATCGTCAAGGTTTACAGTGTTCAGGGGCATAAGGAATGGATCAATGAGGTGAATTTTCTAGGAGTAGTGAATCATCCAAATCTTGTGAAGTTAGTTGGGTATTGTGCTGATGATGATGAAAGAGGGATGCAAAGGCTTCTAGTCTATGAACTTATGTGTAATAAGAGCTTGGAGGATCATCTCGTAGGCCGAGTTGTGTCGGTATCTCTACCGTGGATGATGAGGTTGAAGATTGCGCAAGATGCTGCTCAAGGCTTAGCTTATCTTCATGAAGAAATGGATTTTCAGTTGATATTTCGAGATTTCAAGTCTTCAAACATCTTGCTTGATGAGAGATTCGGTGCAAAGCTCTCGGATTTTGGATTAGCTAGGCAAGGACCTCCTGAAGGACTTGGTCATGTCTCAACTTCAGTTGTAGGTACGGTTGGTTACGCAGCTCCTGAGTATGTACAAACCGGGAAATTGACGGCAAAGAGTGATGTATGGAGCTTTGGGGTAGTGTTGTATGAACTGATCACGGGAAGACGAGCAGTGGATAGAAATCGACCTCGAGGTGAACAGAAGCTTTTAGAATGGGTGAAGCCTTATGTATCAGACTCGAAGAAGTTCCATCTGATTGTCGATCCACGGCTCGAAGGCCAGTACTACTGTATGAAGTCTGTTCAAAGAGTAGCTGCTTTAGCAAACAAATGTCTAATGAAGCAACCGAAATCTCGGCCTAAAATGAGCGAAGTCGTATCACTACTTGGACGCATCATCGATGAAGAAGCGGAAAACGTTCCTCCGCCAGTTGCTGATGAAACAGAAGAGATAATCAAAGCTGAGCTCAATGGAGAGAGTGAGCCTGAGCTAAAGAAGCAAGGTAGTAGTTATCGTAAGAAGGTTCTTGATCTTAGGGATAAGATGAACTTAAACAAGTCGCTTTCGAAGCTAGACTGGCGAAACTGGACACCAGGACTGGTCAGAACATGGTAG

Protein Analysis

343

Amino Acids

39.12

Weight (kDa)

8.84

Isoelectric Point (pI)

28.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 105 - 384 5.6e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 107 - 386 5.4e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28940 AT2G28940
fragaria_vesca FvH4_3g36210 FvH4_3g36210
malus_domestica MD00G1012400.v1.1 MD03G1092100.v1.1
prunus_persica Prupe.6G076100_v2.0.a1
pyrus_communis pycom03g07380 pycom11g08860
rosa_chinensis RchiOBHm_Chr5g0064981
rosa_laevigata RLG00000035746
rosa_multiflora Rmu_sc0003352.1_g000019
rosa_roxburghii Rroxscaffold_1G00016330
rosa_rugosa Rorug05G0367100
rosa_samantha Rh5BG440400 Rh5CG463000
rosa_wichuraiana Rw5G039980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 606
Acc16I TGCGCA 1 cut(s) 294
AciI CCGC 2 cut(s) 827, 842
AclI AACGTT 1 cut(s) 834
AclWI GGATC 3 cut(s) 104, 240, 674
AcsI RAATTY 1 cut(s) 109
AcuI CTGAAG 2 cut(s) 450, 462
AfaI GTAC 3 cut(s) 478, 507, 701
AfiI CCNNNNNNNGG 1 cut(s) 443
AgsI TTSAA 4 cut(s) 286, 364, 372, 722
AjnI CCWGG 1 cut(s) 1009
Alw21I GWGCWC 1 cut(s) 885
Alw26I GTCTC 1 cut(s) 463
AlwI GGATC 3 cut(s) 104, 240, 674
AlwNI CAGNNNCTG 2 cut(s) 497, 851
Ama87I CYCGRG 1 cut(s) 606
AoxI GGCC 3 cut(s) 244, 694, 773
ApeKI GCWGC 3 cut(s) 302, 491, 731
ApoI RAATTY 1 cut(s) 109
AseI ATTAAT 1 cut(s) 35
Asp700I GAANNNNTTC 2 cut(s) 662, 834
AspLEI GCGC 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 434
AsuC2I CCSGG 1 cut(s) 514
AsuHPI GGTGA 3 cut(s) 118, 623, 646
AsuII TTCGAA 2 cut(s) 28, 983
AvaI CYCGRG 1 cut(s) 606
AvaII GGWCC 1 cut(s) 434
BanII GRGCYC 1 cut(s) 885
BbsI GAAGAC 2 cut(s) 360, 586
Bbv12I GWGCWC 1 cut(s) 885
BbvI GCAGC 3 cut(s) 289, 503, 718
BccI CCATC 1 cut(s) 675
BceAI ACGGC 2 cut(s) 540, 701
BcgI CGANNNNNNTGC 2 cut(s) 390, 424
BciT130I CCWGG 1 cut(s) 1011
BclI TGATCA 1 cut(s) 570
BcnI CCSGG 1 cut(s) 514
BcoDI GTCTC 1 cut(s) 463
BfaI CTAG 4 cut(s) 116, 197, 426, 989
BisI GCNGC 3 cut(s) 303, 492, 732
BlpI GCTNAGC 2 cut(s) 313, 879
BlsI GCNGC 3 cut(s) 304, 493, 733
BmcAI AGTACT 1 cut(s) 701
Bme1390I CCNGG 2 cut(s) 514, 1011
Bme18I GGWCC 1 cut(s) 434
BmeT110I CYCGRG 1 cut(s) 606
BmgT120I GGNCC 1 cut(s) 434
BmrFI CCNGG 2 cut(s) 514, 1011
BmsI GCATC 3 cut(s) 174, 289, 819
BpiI GAAGAC 2 cut(s) 360, 586
Bpu10I CCTNAGC 1 cut(s) 903
Bpu1102I GCTNAGC 2 cut(s) 313, 879
Bpu14I TTCGAA 2 cut(s) 28, 983
BpuEI CTTGAG 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 514
Bsa29I ATCGAT 1 cut(s) 816
BsaBI GATNNNNATC 1 cut(s) 597
BsaJI CCNNGG 2 cut(s) 269, 683
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse1I ACTGG 5 cut(s) 697, 845, 998, 1007, 1020
Bse8I GATNNNNATC 1 cut(s) 597
BseBI CCWGG 1 cut(s) 1011
BseCI ATCGAT 1 cut(s) 816
BseDI CCNNGG 2 cut(s) 269, 683
BseGI GGATG 3 cut(s) 130, 189, 279
BseJI GATNNNNATC 1 cut(s) 597
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMII CTCAG 3 cut(s) 489, 870, 894
BseNI ACTGG 5 cut(s) 697, 845, 998, 1007, 1020
BseXI GCAGC 3 cut(s) 289, 503, 718
BshFI GGCC 3 cut(s) 246, 696, 775
BshVI ATCGAT 1 cut(s) 816
BsiHKAI GWGCWC 1 cut(s) 885
BsiHKCI CYCGRG 1 cut(s) 606
BsiSI CCGG 1 cut(s) 513
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 1 cut(s) 463
BsnI GGCC 3 cut(s) 246, 696, 775
BsoBI CYCGRG 1 cut(s) 606
Bsp119I TTCGAA 2 cut(s) 28, 983
Bsp1286I GDGCHC 1 cut(s) 885
Bsp1407I TGTACA 1 cut(s) 505
Bsp143I GATC 5 cut(s) 96, 232, 570, 679, 946
Bsp1720I GCTNAGC 2 cut(s) 313, 879
BspACI CCGC 2 cut(s) 827, 842
BspANI GGCC 3 cut(s) 246, 696, 775
BspCNI CTCAG 3 cut(s) 490, 871, 895
BspDI ATCGAT 1 cut(s) 816
BspHI TCATGA 1 cut(s) 325
BspPI GGATC 3 cut(s) 104, 240, 674
BspT104I TTCGAA 2 cut(s) 28, 983
BsrGI TGTACA 1 cut(s) 505
BsrI ACTGG 5 cut(s) 697, 845, 998, 1007, 1020
BssECI CCNNGG 2 cut(s) 269, 683
BssMI GATC 5 cut(s) 96, 232, 570, 679, 946
Bst2UI CCWGG 1 cut(s) 1011
Bst4CI ACNGT 4 cut(s) 74, 270, 481, 707
Bst6I CTCTTC 1 cut(s) 858
BstAUI TGTACA 1 cut(s) 505
BstBI TTCGAA 2 cut(s) 28, 983
BstDEI CTNAG 5 cut(s) 313, 498, 879, 903, 950
BstDSI CCRYGG 2 cut(s) 269, 683
BstENI CCTNNNNNAGG 1 cut(s) 441
BstF5I GGATG 3 cut(s) 130, 189, 279
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 5 cut(s) 99, 235, 573, 682, 949
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 5 cut(s) 96, 232, 570, 679, 946
BstMWI GCNNNNNNNGC 5 cut(s) 299, 737, 913, 985, 994
BstNI CCWGG 1 cut(s) 1011
BstSCI CCNGG 2 cut(s) 512, 1009
BstV1I GCAGC 3 cut(s) 289, 503, 718
BstV2I GAAGAC 2 cut(s) 360, 586
Bsu15I ATCGAT 1 cut(s) 816
BsuRI GGCC 3 cut(s) 246, 696, 775
BsuTUI ATCGAT 1 cut(s) 816
BtgI CCRYGG 2 cut(s) 269, 683
BtsCI GGATG 3 cut(s) 130, 189, 279
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 2 cut(s) 79, 594
CaiI CAGNNNCTG 2 cut(s) 497, 851
CciI TCATGA 1 cut(s) 325
CfoI GCGC 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 434
ClaI ATCGAT 1 cut(s) 816
CseI GACGC 1 cut(s) 816
Csp6I GTAC 3 cut(s) 477, 506, 700
CviAII CATG 3 cut(s) 326, 455, 1026
CviQI GTAC 3 cut(s) 477, 506, 700
DdeI CTNAG 5 cut(s) 313, 498, 879, 903, 950
DpnI GATC 5 cut(s) 98, 234, 572, 681, 948
DpnII GATC 5 cut(s) 96, 232, 570, 679, 946
Eam1104I CTCTTC 1 cut(s) 858
EarI CTCTTC 1 cut(s) 858
EciI GGCGGA 1 cut(s) 831
Ecl136II GAGCTC 1 cut(s) 883
Eco24I GRGCYC 1 cut(s) 885
Eco47I GGWCC 1 cut(s) 434
Eco53kI GAGCTC 1 cut(s) 883
Eco57I CTGAAG 2 cut(s) 450, 462
Eco88I CYCGRG 1 cut(s) 606
EcoICRI GAGCTC 1 cut(s) 883
EcoNI CCTNNNNNAGG 1 cut(s) 441
EcoO109I RGGNCCY 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 1009
EcoT38I GRGCYC 1 cut(s) 885
FaeI CATG 3 cut(s) 329, 458, 1029
FalI AAGNNNNNCTT 2 cut(s) 950, 982
FatI CATG 3 cut(s) 325, 454, 1025
FbaI TGATCA 1 cut(s) 570
Fnu4HI GCNGC 3 cut(s) 303, 492, 732
FokI GGATG 3 cut(s) 117, 196, 286
FriOI GRGCYC 1 cut(s) 885
Fsp4HI GCNGC 3 cut(s) 303, 492, 732
FspBI CTAG 4 cut(s) 116, 197, 426, 989
FspI TGCGCA 1 cut(s) 294
GlaI GCGC 1 cut(s) 294
GluI GCNGC 3 cut(s) 303, 492, 732
HaeIII GGCC 3 cut(s) 246, 696, 775
HapII CCGG 1 cut(s) 513
HgaI GACGC 1 cut(s) 816
HhaI GCGC 1 cut(s) 295
Hin1II CATG 3 cut(s) 329, 458, 1029
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 5 cut(s) 10, 25, 127, 393, 653
HpaII CCGG 1 cut(s) 513
HphI GGTGA 3 cut(s) 118, 623, 646
Hpy166II GTNNAC 2 cut(s) 70, 614
Hpy188I TCNGA 5 cut(s) 9, 412, 652, 672, 1022
Hpy188III TCNNGA 5 cut(s) 326, 356, 440, 497, 944
Hpy8I GTNNAC 2 cut(s) 70, 614
HpyAV CCTTC 3 cut(s) 437, 686, 931
HpyCH4III ACNGT 4 cut(s) 74, 270, 481, 707
HpyCH4IV ACGT 1 cut(s) 834
HpyCH4V TGCA 2 cut(s) 187, 401
HpyF10VI GCNNNNNNNGC 5 cut(s) 299, 737, 913, 985, 994
HpyF3I CTNAG 5 cut(s) 313, 498, 879, 903, 950
HpySE526I ACGT 1 cut(s) 834
Hsp92II CATG 3 cut(s) 329, 458, 1029
HspAI GCGC 1 cut(s) 293
Ksp22I TGATCA 1 cut(s) 570
Kzo9I GATC 5 cut(s) 96, 232, 570, 679, 946
LmnI GCTCC 2 cut(s) 499, 543
Lsp1109I GCAGC 3 cut(s) 289, 503, 718
LweI GCATC 3 cut(s) 174, 289, 819
MaeI CTAG 4 cut(s) 116, 197, 426, 989
MaeII ACGT 1 cut(s) 834
MaeIII GTNAC 1 cut(s) 485
MalI GATC 5 cut(s) 98, 234, 572, 681, 948
MboI GATC 5 cut(s) 96, 232, 570, 679, 946
MboII GAAGA 9 cut(s) 42, 298, 314, 341, 360, 591, 670, 833, 875
MhlI GDGCHC 1 cut(s) 885
MluCI AATT 2 cut(s) 109, 518
MlyI GAGTC 2 cut(s) 4, 647
MnlI CCTC 8 cut(s) 97, 173, 223, 273, 447, 602, 615, 849
MroXI GAANNNNTTC 2 cut(s) 662, 834
MseI TTAA 4 cut(s) 35, 47, 56, 968
MspI CCGG 1 cut(s) 513
MspR9I CCNGG 2 cut(s) 514, 1011
MvaI CCWGG 1 cut(s) 1011
MwoI GCNNNNNNNGC 5 cut(s) 299, 737, 913, 985, 994
NciI CCSGG 1 cut(s) 514
NdeII GATC 5 cut(s) 96, 232, 570, 679, 946
NlaIII CATG 3 cut(s) 329, 458, 1029
NmeAIII GCCGAG 2 cut(s) 272, 751
NsbI TGCGCA 1 cut(s) 294
NspV TTCGAA 2 cut(s) 28, 983
PaeR7I CTCGAG 1 cut(s) 606
PagI TCATGA 1 cut(s) 325
PdmI GAANNNNTTC 2 cut(s) 662, 834
PfeI GAWTC 3 cut(s) 25, 127, 393
PflFI GACNNNGTC 1 cut(s) 450
PkrI GCNGC 3 cut(s) 304, 493, 733
PleI GAGTC 2 cut(s) 4, 647
PpsI GAGTC 2 cut(s) 4, 647
PpuMI RGGWCCY 1 cut(s) 434
PshBI ATTAAT 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 885
Psp1406I AACGTT 1 cut(s) 834
Psp5II RGGWCCY 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 1009
PspGI CCWGG 1 cut(s) 1009
PspPI GGNCC 1 cut(s) 434
PspPPI RGGWCCY 1 cut(s) 434
PspXI VCTCGAGB 1 cut(s) 606
PstNI CAGNNNCTG 2 cut(s) 497, 851
PsyI GACNNNGTC 1 cut(s) 450
RsaI GTAC 3 cut(s) 478, 507, 701
RsaNI GTAC 3 cut(s) 477, 506, 700
SacI GAGCTC 1 cut(s) 885
SaqAI TTAA 4 cut(s) 35, 47, 56, 968
SatI GCNGC 3 cut(s) 303, 492, 732
Sau3AI GATC 5 cut(s) 96, 232, 570, 679, 946
Sau96I GGNCC 1 cut(s) 434
ScaI AGTACT 1 cut(s) 701
SchI GAGTC 2 cut(s) 4, 647
ScrFI CCNGG 2 cut(s) 514, 1011
SduI GDGCHC 1 cut(s) 885
SfaNI GCATC 3 cut(s) 174, 289, 819
Sfr274I CTCGAG 1 cut(s) 606
SfuI TTCGAA 2 cut(s) 28, 983
SinI GGWCC 1 cut(s) 434
SlaI CTCGAG 1 cut(s) 606
SmlI CTYRAG 2 cut(s) 306, 606
SmoI CTYRAG 2 cut(s) 306, 606
Sse9I AATT 2 cut(s) 109, 518
SsiI CCGC 2 cut(s) 827, 842
SspMI CTAG 4 cut(s) 116, 197, 426, 989
SstI GAGCTC 1 cut(s) 885
StyD4I CCNGG 2 cut(s) 512, 1009
TaaI ACNGT 4 cut(s) 74, 270, 481, 707
TaiI ACGT 1 cut(s) 837
TaqI TCGA 9 cut(s) 28, 355, 601, 607, 656, 678, 690, 816, 983
TasI AATT 2 cut(s) 109, 518
TatI WGTACW 2 cut(s) 505, 699
TfiI GAWTC 3 cut(s) 25, 127, 393
Tru1I TTAA 4 cut(s) 35, 47, 56, 968
Tru9I TTAA 4 cut(s) 35, 47, 56, 968
TscAI CASTG 2 cut(s) 79, 594
TseI GCWGC 3 cut(s) 302, 491, 731
TspRI CASTG 2 cut(s) 79, 594
Tth111I GACNNNGTC 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 434
VspI ATTAAT 1 cut(s) 35
XagI CCTNNNNNAGG 1 cut(s) 441
XapI RAATTY 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 606
XmnI GAANNNNTTC 2 cut(s) 662, 834
XspI CTAG 4 cut(s) 116, 197, 426, 989
ZrmI AGTACT 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.