Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0014119

Physical Location & Seq

Genomic Coordinates Forward (+)

5897383 .. 5899589

Gene Structure 2207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g07380.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAAGTGCTTCCATTTCACTAACGGGGAGCGGCGGGACGACGATGAACCCGGCGTCGTTCCCCGGACGACGTCGAAGGTGTCGTGGGTGCGGTCTCTCAGCGTGGCCTCCAGCAGGTACGACACTAGGCGGTCCGAGTTCGACTCGGACTCGAGGGACCTGTCCGATTCGTTGGCATTCCAGGAGCTGCTAAGTATGCGGCGGGCCAATGACCTGAGGGTGTTCACGTTCTCGGAGCTGAAGGCGGCGACCAGGGGATTCAGCAGGGCATTGCTGATTGGGGAAGGAGGGTTTGGGTGCGTTTACAGAGGAATCGTCAGCGGCTGCGACGGGAAATTGGACGTTGCTATCAAACAGTTGAGTCGCAATGGCTTCCAGGGGCATAAGGAGTGGATTAACGAAGTAAACTTGTTGGGCGTTGTCAGGCACCCAAATCTTGTTAAGCTAGTAGGATACTGTGCAGAAGACGATGAAAGGGGGATTCAACGCCTATTGGTTTATGAACTTATGCGTAATAAAAGCTTGGAGGACCATCTATTGGTTCGGTTTTCACCATCTCTCCCGTGGATGACAAGACTAAGAATTGCCCATGATGCAGCCCGCGGATTGGCATATCTACATGAAGAGATGGATTTTCAGCTAATTTTCCGCGACTTTAAACCATCAAACATTCTGCTAGACGAGGACTTCAATGCAAAGCTTTCAGACTTTGGACTCGCAAGGCAGGGACCTCCAGAGGGAACAAGTCATGTTTCAACAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

255

Amino Acids

28.83

Weight (kDa)

6.67

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28940 AT2G28940
fragaria_vesca	FvH4_3g36210 FvH4_3g36210
malus_domestica	MD00G1012400.v1.1 MD03G1092100.v1.1
prunus_persica	Prupe.6G076100_v2.0.a1
pyrus_communis	pycom03g07380 pycom11g08860
rosa_chinensis	RchiOBHm_Chr5g0064981
rosa_laevigata	RLG00000035746
rosa_multiflora	Rmu_sc0003352.1_g000019
rosa_roxburghii	Rroxscaffold_1G00016330
rosa_rugosa	Rorug05G0367100
rosa_samantha	Rh5BG440400 Rh5CG463000
rosa_wichuraiana	Rw5G039980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	426
AccB7I	CCANNNNNTGG	1 cut(s)	538
AccBSI	CCGCTC	1 cut(s)	31
AccII	CGCG	2 cut(s)	603, 651
AcuI	CTGAAG	1 cut(s)	260
AcyI	GRCGYC	2 cut(s)	54, 71
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	4 cut(s)	114, 538, 607, 737
AgsI	TTSAA	3 cut(s)	485, 691, 756
AjnI	CCWGG	3 cut(s)	180, 251, 375
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AluBI	AGCT	6 cut(s)	187, 238, 445, 522, 640, 700
AluI	AGCT	6 cut(s)	187, 238, 445, 522, 640, 700
Alw26I	GTCTC	1 cut(s)	99
AlwNI	CAGNNNCTG	2 cut(s)	187, 324
Ama87I	CYCGRG	1 cut(s)	151
AoxI	GGCC	2 cut(s)	105, 204
ApeKI	GCWGC	3 cut(s)	187, 324, 596
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	5 cut(s)	132, 157, 204, 529, 728
AsuC2I	CCSGG	2 cut(s)	51, 64
AsuHPI	GGTGA	1 cut(s)	543
AvaI	CYCGRG	1 cut(s)	151
AvaII	GGWCC	4 cut(s)	132, 157, 529, 728
AxyI	CCTNAGG	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	471
BbvI	GCAGC	3 cut(s)	174, 311, 608
BccI	CCATC	4 cut(s)	540, 562, 622, 670
BciT130I	CCWGG	3 cut(s)	182, 253, 377
BciVI	GTATCC	1 cut(s)	446
BcnI	CCSGG	2 cut(s)	51, 64
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	3 cut(s)	126, 446, 677
BfuAI	ACCTGC	1 cut(s)	105
BfuI	GTATCC	1 cut(s)	446
BisI	GCNGC	7 cut(s)	32, 188, 200, 246, 322, 325, 597
BlsI	GCNGC	7 cut(s)	33, 189, 201, 247, 323, 326, 598
Bme1390I	CCNGG	5 cut(s)	51, 64, 182, 253, 377
Bme18I	GGWCC	4 cut(s)	132, 157, 529, 728
BmeT110I	CYCGRG	1 cut(s)	151
BmgT120I	GGNCC	5 cut(s)	132, 157, 204, 529, 728
BmiI	GGNNCC	3 cut(s)	158, 428, 729
BmrFI	CCNGG	5 cut(s)	51, 64, 182, 253, 377
BmsI	GCATC	1 cut(s)	583
BpiI	GAAGAC	1 cut(s)	471
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpmI	CTGGAG	2 cut(s)	94, 717
BpuMI	CCSGG	2 cut(s)	51, 64
BsaHI	GRCGYC	2 cut(s)	54, 71
BsaI	GGTCTC	1 cut(s)	99
BsaJI	CCNNGG	5 cut(s)	62, 252, 376, 563, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 538, 607, 737
Bse21I	CCTNAGG	1 cut(s)	215
Bse3DI	GCAATG	2 cut(s)	269, 373
BseBI	CCWGG	3 cut(s)	182, 253, 377
BseDI	CCNNGG	5 cut(s)	62, 252, 376, 563, 601
BseGI	GGATG	1 cut(s)	573
BseLI	CCNNNNNNNGG	4 cut(s)	114, 538, 607, 737
BseMI	GCAATG	2 cut(s)	269, 373
BseMII	CTCAG	2 cut(s)	112, 206
BseXI	GCAGC	3 cut(s)	174, 311, 608
BsgI	GTGCAG	1 cut(s)	480
Bsh1236I	CGCG	2 cut(s)	603, 651
BshFI	GGCC	2 cut(s)	107, 206
BshNI	GGYRCC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	51, 64
BslFI	GGGAC	3 cut(s)	50, 170, 741
BslI	CCNNNNNNNGG	4 cut(s)	114, 538, 607, 737
BsmAI	GTCTC	1 cut(s)	99
BsmFI	GGGAC	3 cut(s)	50, 170, 741
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	107, 206
Bso31I	GGTCTC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	151
BspANI	GGCC	2 cut(s)	107, 206
BspCNI	CTCAG	2 cut(s)	111, 207
BspFNI	CGCG	2 cut(s)	603, 651
BspLI	GGNNCC	3 cut(s)	158, 428, 729
BspMI	ACCTGC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	426
BspTNI	GGTCTC	1 cut(s)	99
BsrBI	CCGCTC	1 cut(s)	31
BsrDI	GCAATG	2 cut(s)	269, 373
BssECI	CCNNGG	5 cut(s)	62, 252, 376, 563, 601
BssNI	GRCGYC	2 cut(s)	54, 71
Bst2UI	CCWGG	3 cut(s)	182, 253, 377
Bst4CI	ACNGT	2 cut(s)	357, 458
Bst6I	CTCTTC	1 cut(s)	618
BstACI	GRCGYC	2 cut(s)	54, 71
BstC8I	GCNNGC	2 cut(s)	204, 601
BstDEI	CTNAG	4 cut(s)	98, 191, 215, 578
BstDSI	CCRYGG	2 cut(s)	563, 601
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	573
BstFNI	CGCG	2 cut(s)	603, 651
BstMAI	GTCTC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 593
BstNI	CCWGG	3 cut(s)	182, 253, 377
BstSCI	CCNGG	5 cut(s)	49, 62, 180, 251, 375
BstUI	CGCG	2 cut(s)	603, 651
BstV1I	GCAGC	3 cut(s)	174, 311, 608
BstV2I	GAAGAC	1 cut(s)	471
Bsu36I	CCTNAGG	1 cut(s)	215
BsuI	GTATCC	1 cut(s)	446
BsuRI	GGCC	2 cut(s)	107, 206
BtgI	CCRYGG	2 cut(s)	563, 601
BtsCI	GGATG	1 cut(s)	573
BveI	ACCTGC	1 cut(s)	105
Cac8I	GCNNGC	2 cut(s)	204, 601
CaiI	CAGNNNCTG	2 cut(s)	187, 324
Cfr13I	GGNCC	5 cut(s)	132, 157, 204, 529, 728
Cfr42I	CCGCGG	1 cut(s)	604
CpoI	CGGWCCG	1 cut(s)	132
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	118
CspI	CGGWCCG	1 cut(s)	132
CviAII	CATG	3 cut(s)	590, 620, 749
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	4 cut(s)	98, 191, 215, 578
DraI	TTTAAA	1 cut(s)	658
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Eco31I	GGTCTC	1 cut(s)	99
Eco47I	GGWCC	4 cut(s)	132, 157, 529, 728
Eco57I	CTGAAG	1 cut(s)	260
Eco81I	CCTNAGG	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	151
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoO109I	RGGNCCY	2 cut(s)	157, 728
EcoRII	CCWGG	3 cut(s)	180, 251, 375
FaeI	CATG	3 cut(s)	593, 623, 752
FaiI	YATR	9 cut(s)	197, 384, 501, 509, 591, 613, 621, 750, 763
FaqI	GGGAC	3 cut(s)	50, 170, 741
FatI	CATG	3 cut(s)	589, 619, 748
FauI	CCCGC	3 cut(s)	27, 195, 608
Fnu4HI	GCNGC	7 cut(s)	32, 188, 200, 246, 322, 325, 597
FokI	GGATG	1 cut(s)	580
Fsp4HI	GCNGC	7 cut(s)	32, 188, 200, 246, 322, 325, 597
FspBI	CTAG	3 cut(s)	126, 446, 677
GluI	GCNGC	7 cut(s)	32, 188, 200, 246, 322, 325, 597
GsuI	CTGGAG	2 cut(s)	94, 717
HaeIII	GGCC	2 cut(s)	107, 206
HapII	CCGG	2 cut(s)	51, 64
HgaI	GACGC	1 cut(s)	43
Hin1I	GRCGYC	2 cut(s)	54, 71
Hin1II	CATG	3 cut(s)	593, 623, 752
HindIII	AAGCTT	2 cut(s)	520, 698
HinfI	GANTC	8 cut(s)	143, 149, 167, 258, 312, 361, 481, 714
HpaII	CCGG	2 cut(s)	51, 64
HphI	GGTGA	1 cut(s)	543
Hpy166II	GTNNAC	3 cut(s)	225, 304, 406
Hpy188I	TCNGA	5 cut(s)	136, 148, 166, 235, 706
Hpy188III	TCNNGA	1 cut(s)	734
Hpy8I	GTNNAC	3 cut(s)	225, 304, 406
Hpy99I	CGWCG	5 cut(s)	44, 59, 73, 76, 332
HpyAV	CCTTC	3 cut(s)	70, 235, 278
HpyCH4III	ACNGT	2 cut(s)	357, 458
HpyCH4IV	ACGT	3 cut(s)	71, 227, 342
HpyCH4V	TGCA	3 cut(s)	461, 596, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 593
HpyF3I	CTNAG	4 cut(s)	98, 191, 215, 578
HpySE526I	ACGT	3 cut(s)	71, 227, 342
Hsp92I	GRCGYC	2 cut(s)	54, 71
Hsp92II	CATG	3 cut(s)	593, 623, 752
KspI	CCGCGG	1 cut(s)	604
LmnI	GCTCC	3 cut(s)	28, 184, 235
Lsp1109I	GCAGC	3 cut(s)	174, 311, 608
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	3 cut(s)	126, 446, 677
MaeII	ACGT	3 cut(s)	71, 227, 342
MbiI	CCGCTC	1 cut(s)	31
MboII	GAAGA	2 cut(s)	476, 635
MluCI	AATT	3 cut(s)	335, 582, 642
MlyI	GAGTC	4 cut(s)	137, 143, 370, 708
MnlI	CCTC	9 cut(s)	118, 147, 210, 281, 302, 520, 676, 730, 741
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	3 cut(s)	396, 441, 657
MspA1I	CMGCKG	2 cut(s)	321, 603
MspI	CCGG	2 cut(s)	51, 64
MspR9I	CCNGG	5 cut(s)	51, 64, 182, 253, 377
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	3 cut(s)	182, 253, 377
MvnI	CGCG	2 cut(s)	603, 651
MwoI	GCNNNNNNNGC	2 cut(s)	196, 593
NciI	CCSGG	2 cut(s)	51, 64
NlaIII	CATG	3 cut(s)	593, 623, 752
NlaIV	GGNNCC	3 cut(s)	158, 428, 729
PaeR7I	CTCGAG	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PctI	GAATGC	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	4 cut(s)	167, 258, 312, 481
PflFI	GACNNNGTC	1 cut(s)	70
PflMI	CCANNNNNTGG	1 cut(s)	538
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	7 cut(s)	33, 189, 201, 247, 323, 326, 598
PleI	GAGTC	4 cut(s)	137, 143, 369, 708
PpsI	GAGTC	4 cut(s)	137, 143, 369, 708
PpuMI	RGGWCCY	2 cut(s)	157, 728
Psp5II	RGGWCCY	2 cut(s)	157, 728
Psp6I	CCWGG	3 cut(s)	180, 251, 375
PspGI	CCWGG	3 cut(s)	180, 251, 375
PspN4I	GGNNCC	3 cut(s)	158, 428, 729
PspPI	GGNCC	5 cut(s)	132, 157, 204, 529, 728
PspPPI	RGGWCCY	2 cut(s)	157, 728
PspXI	VCTCGAGB	1 cut(s)	151
PstNI	CAGNNNCTG	2 cut(s)	187, 324
PsyI	GACNNNGTC	1 cut(s)	70
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
Rsr2I	CGGWCCG	1 cut(s)	132
RsrII	CGGWCCG	1 cut(s)	132
SacII	CCGCGG	1 cut(s)	604
SaqAI	TTAA	3 cut(s)	396, 441, 657
SatI	GCNGC	7 cut(s)	32, 188, 200, 246, 322, 325, 597
Sau96I	GGNCC	5 cut(s)	132, 157, 204, 529, 728
SchI	GAGTC	4 cut(s)	137, 143, 370, 708
ScrFI	CCNGG	5 cut(s)	51, 64, 182, 253, 377
SfaNI	GCATC	1 cut(s)	583
Sfr274I	CTCGAG	1 cut(s)	151
Sfr303I	CCGCGG	1 cut(s)	604
SgrBI	CCGCGG	1 cut(s)	604
SinI	GGWCC	4 cut(s)	132, 157, 529, 728
SlaI	CTCGAG	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
Sse9I	AATT	3 cut(s)	335, 582, 642
SspMI	CTAG	3 cut(s)	126, 446, 677
StyD4I	CCNGG	5 cut(s)	49, 62, 180, 251, 375
TaaI	ACNGT	2 cut(s)	357, 458
TaiI	ACGT	3 cut(s)	74, 230, 345
TaqI	TCGA	3 cut(s)	74, 141, 152
TasI	AATT	3 cut(s)	335, 582, 642
TauI	GCSGC	4 cut(s)	34, 202, 248, 324
TfiI	GAWTC	4 cut(s)	167, 258, 312, 481
Tru1I	TTAA	3 cut(s)	396, 441, 657
Tru9I	TTAA	3 cut(s)	396, 441, 657
TseI	GCWGC	3 cut(s)	187, 324, 596
TspDTI	ATGAA	5 cut(s)	17, 60, 486, 516, 636
Tth111I	GACNNNGTC	1 cut(s)	70
Van91I	CCANNNNNTGG	1 cut(s)	538
VpaK11BI	GGWCC	4 cut(s)	132, 157, 529, 728
XagI	CCTNNNNNAGG	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	561
XhoI	CTCGAG	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	126, 446, 677
ZraI	GACGTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.