AT2G31085

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017540
Physical Location & Seq
Forward (+)
13254152 .. 13254859
708 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31085.1

Sequence Viewer

Length: 246 bp
ATGGCGAATTTGATCCTTAAGCAATCTCTAATCATACTCCTAATCATATATTCAACACCAATCTTGAGTTCTCAAGCTCGAATCCTCCGTACATATCGCCCCACAACCATGGGCGATATGGATAGTCAGGTTCTCCTACGTGAACTCGGGATTGATCTCTCTAAGTTCAAAGGTCAAGACGAGAGACGGTTTTTAGTGGATTCCGAAAGGGTTTCTCCGGGGGGTCCTGATCCACAACACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.19

Weight (kDa)

8.18

Isoelectric Point (pI)

58.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31083 AT2G31083 AT2G31085
prunus_persica Prupe.4G060400_v2.0.a1 Prupe.4G170800_v2.0.a1
rosa_roxburghii Rroxscaffold_1G00048800 Rroxscaffold_1G00066050
rosa_samantha Rh5AG080200 Rh5CG088300 Rh5DG075600
rosa_wichuraiana Rw5G007420 Rw5G020020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 7, 224
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 1 cut(s) 91
AflII CTTAAG 1 cut(s) 17
AgsI TTSAA 2 cut(s) 54, 169
AjuI GAANNNNNNNTTGG 2 cut(s) 52, 84
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 2 cut(s) 7, 224
Ama87I CYCGRG 1 cut(s) 146
ApoI RAATTY 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 219
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 224
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 178
BfrI CTTAAG 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 219
BpuEI CTTGAG 2 cut(s) 57, 85
BpuMI CCSGG 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 108, 218
BseDI CCNNGG 2 cut(s) 108, 218
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 178
BsmBI CGTCTC 1 cut(s) 178
BsoBI CYCGRG 1 cut(s) 146
Bsp143I GATC 3 cut(s) 12, 154, 229
Bsp19I CCATGG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 2 cut(s) 7, 224
BspTI CTTAAG 1 cut(s) 17
BssECI CCNNGG 2 cut(s) 108, 218
BssMI GATC 3 cut(s) 12, 154, 229
BssT1I CCWWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 189
BstAFI CTTAAG 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 108
BstKTI GATC 3 cut(s) 15, 157, 232
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 3 cut(s) 12, 154, 229
BstSCI CCNGG 1 cut(s) 217
BstXI CCANNNNNNTGG 1 cut(s) 109
BtgI CCRYGG 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 90
CviAII CATG 1 cut(s) 109
CviJI RGCY 1 cut(s) 77
CviKI_1 RGCY 1 cut(s) 77
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 162
DpnI GATC 3 cut(s) 14, 156, 231
DpnII GATC 3 cut(s) 12, 154, 229
Eco130I CCWWGG 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 1 cut(s) 112
FaiI YATR 6 cut(s) 35, 47, 49, 94, 110, 119
FatI CATG 1 cut(s) 108
HapII CCGG 1 cut(s) 218
Hin1II CATG 1 cut(s) 112
HinfI GANTC 2 cut(s) 81, 200
HpaII CCGG 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 4 cut(s) 64, 148, 176, 227
Hpy8I GTNNAC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 139
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 1 cut(s) 112
Kzo9I GATC 3 cut(s) 12, 154, 229
LpnPI CCDG 3 cut(s) 113, 231, 240
MaeII ACGT 1 cut(s) 139
MalI GATC 3 cut(s) 14, 156, 231
MboI GATC 3 cut(s) 12, 154, 229
MluCI AATT 1 cut(s) 7
MnlI CCTC 1 cut(s) 95
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 107
MspCI CTTAAG 1 cut(s) 17
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 219
NciI CCSGG 1 cut(s) 219
NcoI CCATGG 1 cut(s) 108
NdeII GATC 3 cut(s) 12, 154, 229
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 85
PfeI GAWTC 2 cut(s) 81, 200
Ppu21I YACGTR 1 cut(s) 140
PpuMI RGGWCCY 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 224
PspPPI RGGWCCY 1 cut(s) 224
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 1 cut(s) 18
Sau3AI GATC 3 cut(s) 12, 154, 229
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 219
SetI ASST 4 cut(s) 79, 132, 142, 175
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 3 cut(s) 17, 64, 72
SmoI CTYRAG 3 cut(s) 17, 64, 72
Sse9I AATT 1 cut(s) 7
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 189
TaiI ACGT 1 cut(s) 142
TaqI TCGA 1 cut(s) 79
TasI AATT 1 cut(s) 7
TfiI GAWTC 2 cut(s) 81, 200
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TspGWI ACGGA 1 cut(s) 77
Vha464I CTTAAG 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.