Rh5CG088300

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017540
Physical Location & Seq
Forward (+)
6918721 .. 6918996
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG088300.1

Sequence Viewer

Length: 276 bp
ATGGCTGCAAATTACTATACACTACTCATTCGAGTCTCAATGCTGATCATGTTACTTATCTGGTCATTGCATGTTGCCACTGGTTTGGAAGCAAAAGGTTATGGTGGGTGCAAGACCATGCAGAGGAGGATCAATAGCAAGACTATCTTACGTGAATTAATAGCTGATTTGTCTAAGATGGAGAAGCAGCATTACAAAACGAGGAGCACATCGTCTGGAGACAGAGTTTCACCAGGAGGGCCAGATCCACAGCACAACTCATGCCCACCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.11

Weight (kDa)

9.69

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31083 AT2G31083 AT2G31085
prunus_persica Prupe.4G060400_v2.0.a1 Prupe.4G170800_v2.0.a1
rosa_roxburghii Rroxscaffold_1G00048800 Rroxscaffold_1G00066050
rosa_samantha Rh5AG080200 Rh5CG088300 Rh5DG075600
rosa_wichuraiana Rw5G007420 Rw5G020020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 137, 239
AfiI CCNNNNNNNGG 1 cut(s) 123
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 2 cut(s) 40, 213
AlwI GGATC 2 cut(s) 137, 239
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 5, 187
AseI ATTAAT 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 222
BarI GAAGNNNNNNTAC 2 cut(s) 176, 208
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 234
BclI TGATCA 1 cut(s) 45
BcoDI GTCTC 2 cut(s) 40, 213
BisI GCNGC 2 cut(s) 6, 188
BlsI GCNGC 2 cut(s) 7, 189
Bme1390I CCNGG 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 237
BsaAI YACGTR 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 85
Bse3DI GCAATG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMI GCAATG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 2 cut(s) 139, 217
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 2 cut(s) 40, 213
BsnI GGCC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 3 cut(s) 45, 129, 244
BspANI GGCC 1 cut(s) 241
BspPI GGATC 2 cut(s) 137, 239
BsrDI GCAATG 1 cut(s) 65
BsrI ACTGG 1 cut(s) 85
BssMI GATC 3 cut(s) 45, 129, 244
Bst2UI CCWGG 1 cut(s) 234
BstBAI YACGTR 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 174
BstKTI GATC 3 cut(s) 48, 132, 247
BstMAI GTCTC 2 cut(s) 40, 213
BstMBI GATC 3 cut(s) 45, 129, 244
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 244
BstXI CCANNNNNNTGG 1 cut(s) 85
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 239
CviAII CATG 4 cut(s) 49, 71, 118, 261
CviJI RGCY 3 cut(s) 5, 164, 241
CviKI_1 RGCY 3 cut(s) 5, 164, 241
DdeI CTNAG 1 cut(s) 174
DpnI GATC 3 cut(s) 47, 131, 246
DpnII GATC 3 cut(s) 45, 129, 244
EcoRII CCWGG 1 cut(s) 232
FaeI CATG 4 cut(s) 52, 74, 121, 264
FaiI YATR 7 cut(s) 18, 50, 72, 102, 119, 262, 274
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FatI CATG 4 cut(s) 48, 70, 117, 260
FbaI TGATCA 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 6, 188
Fsp4HI GCNGC 2 cut(s) 6, 188
GluI GCNGC 2 cut(s) 6, 188
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 241
Hin1II CATG 4 cut(s) 52, 74, 121, 264
HinfI GANTC 1 cut(s) 33
HphI GGTGA 1 cut(s) 222
Hpy188III TCNNGA 1 cut(s) 216
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 4 cut(s) 8, 70, 111, 121
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 4 cut(s) 52, 74, 121, 264
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 3 cut(s) 45, 129, 244
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 6 cut(s) 46, 66, 201, 219, 246, 255
Lsp1109I GCAGC 1 cut(s) 199
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 51
MalI GATC 3 cut(s) 47, 131, 246
MboI GATC 3 cut(s) 45, 129, 244
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 2 cut(s) 10, 155
MlyI GAGTC 1 cut(s) 42
MnlI CCTC 4 cut(s) 117, 120, 195, 230
MseI TTAA 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
NdeII GATC 3 cut(s) 45, 129, 244
NlaIII CATG 4 cut(s) 52, 74, 121, 264
NspI RCATGY 1 cut(s) 74
PkrI GCNGC 2 cut(s) 7, 189
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
Ppu21I YACGTR 1 cut(s) 152
PshBI ATTAAT 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspPI GGNCC 1 cut(s) 239
PsuI RGATCY 1 cut(s) 244
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 2 cut(s) 6, 188
Sau3AI GATC 3 cut(s) 45, 129, 244
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 209
SetI ASST 3 cut(s) 100, 154, 166
Sse9I AATT 2 cut(s) 10, 155
StyD4I CCNGG 1 cut(s) 232
TaiI ACGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 31
TasI AATT 2 cut(s) 10, 155
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TscAI CASTG 1 cut(s) 85
TseI GCWGC 2 cut(s) 5, 187
TspRI CASTG 1 cut(s) 85
VspI ATTAAT 1 cut(s) 158
XceI RCATGY 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.