Prupe.4G170800_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
10077796 .. 10078041
246 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G170800.1

Sequence Viewer

Length: 246 bp
ATGCCTAGCTTTCCAAAGGCAAGCTTGTTGATAGCATTCTTAATCATTCTGTCAATGCTTGTAGTGAGTTCAGAGGCACGTCTTTCTCTTGTGTTCTCAACCCTGCCACATAAGACTGATAGCCGCCTTTTCTTGCGTAAACTGGGGTTTCATGTACCAAAAAATGAGTCTTATCAGAGAAGGTTTCTTCTGGGTGGAGATATAAAGAGAACCTCACCCGGAGGACCAGATCCCCAACATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.1

Weight (kDa)

10.59

Isoelectric Point (pI)

63.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017540)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 124
AclWI GGATC 1 cut(s) 224
AfaI GTAC 1 cut(s) 156
AjiI CACGTC 1 cut(s) 80
AluBI AGCT 2 cut(s) 9, 24
AluI AGCT 2 cut(s) 9, 24
AlwI GGATC 1 cut(s) 224
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 207
AvaII GGWCC 1 cut(s) 224
BcnI CCSGG 1 cut(s) 219
BfaI CTAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 224
BmgBI CACGTC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 219
BmrI ACTGGG 1 cut(s) 152
BmuI ACTGGG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 147
BsiSI CCGG 1 cut(s) 219
BsmI GAATGC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 1 cut(s) 124
BspPI GGATC 1 cut(s) 224
BsrI ACTGG 1 cut(s) 147
BssMI GATC 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 22
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BtrI CACGTC 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 155
CviAII CATG 1 cut(s) 152
CviJI RGCY 3 cut(s) 9, 24, 123
CviKI_1 RGCY 3 cut(s) 9, 24, 123
CviQI GTAC 1 cut(s) 155
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 224
FaeI CATG 1 cut(s) 155
FaiI YATR 3 cut(s) 111, 153, 203
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FatI CATG 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 124
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 124
HapII CCGG 1 cut(s) 219
Hin1II CATG 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 22
HinfI GANTC 1 cut(s) 167
HpaII CCGG 1 cut(s) 219
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 2 cut(s) 73, 177
Hpy8I GTNNAC 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 174
HpyCH4IV ACGT 1 cut(s) 79
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 1 cut(s) 155
Kzo9I GATC 1 cut(s) 229
LpnPI CCDG 5 cut(s) 116, 128, 176, 232, 240
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 79
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 1 cut(s) 179
MflI RGATCY 1 cut(s) 229
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 3 cut(s) 67, 215, 223
MseI TTAA 1 cut(s) 41
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 35
NciI CCSGG 1 cut(s) 219
NdeII GATC 1 cut(s) 229
NlaIII CATG 1 cut(s) 155
PctI GAATGC 1 cut(s) 35
PkrI GCNGC 1 cut(s) 125
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 224
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 1 cut(s) 124
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 219
SetI ASST 5 cut(s) 11, 26, 82, 185, 215
SinI GGWCC 1 cut(s) 224
SsiI CCGC 1 cut(s) 124
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 217
TaiI ACGT 1 cut(s) 82
TauI GCSGC 1 cut(s) 126
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 224
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.