Rh5AG080200

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0017540
Physical Location & Seq
Forward (+)
6860759 .. 6861256
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG080200.1

Sequence Viewer

Length: 498 bp
ATGAGATCTTGTAATGTGCATACAACTTGGCATATTTGCAGTACTATAAATTTGAGCTTGTTATCCAAGGAATTACACTACTGCAAAAGTACTGCTAAGCTTAAGCACCAGCAACCTTTATTAGAACTGTTGCTTCTGCATTCCAAAATGGCTGCAAATTACTATACTCTACTCATTCGAGTCTCAATGCTGATCATGTTACTTATCTGGTCATTGCATGTTGCCACTGGTTTGGAAGCAAAAGGTTATGGTGGGCGCAAGACCATGCAGAGGAGGATCAATAGCAAGACTATCTTGAGTGAATTAATAGCTGATTTGTCTAAGATGGAGAAGCAGCATTACAAAACGAGGAGCACATCGTCTGGAGACAGAGTTTCACCAGGAGGGCCAGATCCACAGCACAACTCATGCCCACCAGCATTACTCTGCAAAGCTCTTAGAAAGAATAAGTGCCGGAATAGCTCCACCACCACTACTACTAATGCTTGTAGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.54

Weight (kDa)

9.85

Isoelectric Point (pI)

54.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31083 AT2G31083 AT2G31085
prunus_persica Prupe.4G060400_v2.0.a1 Prupe.4G170800_v2.0.a1
rosa_roxburghii Rroxscaffold_1G00048800 Rroxscaffold_1G00066050
rosa_samantha Rh5AG080200 Rh5CG088300 Rh5DG075600
rosa_wichuraiana Rw5G007420 Rw5G020020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 284, 386
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 2 cut(s) 43, 91
AfiI CCNNNNNNNGG 1 cut(s) 270
AflII CTTAAG 1 cut(s) 101
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 5 cut(s) 57, 100, 311, 434, 462
AluI AGCT 5 cut(s) 57, 100, 311, 434, 462
Alw21I GWGCWC 1 cut(s) 356
Alw26I GTCTC 2 cut(s) 187, 360
AlwI GGATC 2 cut(s) 284, 386
AoxI GGCC 1 cut(s) 386
ApeKI GCWGC 2 cut(s) 152, 334
ApoI RAATTY 1 cut(s) 49
AseI ATTAAT 1 cut(s) 305
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 369
BarI GAAGNNNNNNTAC 2 cut(s) 323, 355
Bbv12I GWGCWC 1 cut(s) 356
BbvI GCAGC 2 cut(s) 139, 346
BccI CCATC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 381
BclI TGATCA 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 187, 360
BfrI CTTAAG 1 cut(s) 101
BglII AGATCT 1 cut(s) 5
BisI GCNGC 2 cut(s) 153, 335
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 2 cut(s) 154, 336
BmcAI AGTACT 2 cut(s) 43, 91
Bme1390I CCNGG 1 cut(s) 381
BmgT120I GGNCC 1 cut(s) 386
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 1 cut(s) 482
BpmI CTGGAG 1 cut(s) 384
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 66
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 212
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 1 cut(s) 66
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMI GCAATG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 2 cut(s) 286, 364
BseXI GCAGC 2 cut(s) 139, 346
BshFI GGCC 1 cut(s) 388
BsiHKAI GWGCWC 1 cut(s) 356
BsiSI CCGG 1 cut(s) 454
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 2 cut(s) 187, 360
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 356
Bsp143I GATC 4 cut(s) 5, 192, 276, 391
Bsp1720I GCTNAGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 388
BspPI GGATC 2 cut(s) 284, 386
BspTI CTTAAG 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 212
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 4 cut(s) 5, 192, 276, 391
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 1 cut(s) 129
BstAFI CTTAAG 1 cut(s) 101
BstDEI CTNAG 3 cut(s) 96, 321, 437
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 4 cut(s) 8, 195, 279, 394
BstMAI GTCTC 2 cut(s) 187, 360
BstMBI GATC 4 cut(s) 5, 192, 276, 391
BstMWI GCNNNNNNNGC 1 cut(s) 459
BstNI CCWGG 1 cut(s) 381
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 139, 346
BstX2I RGATCY 2 cut(s) 5, 391
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 2 cut(s) 5, 391
BsuRI GGCC 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 225
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 386
Csp6I GTAC 2 cut(s) 42, 90
CviAII CATG 4 cut(s) 196, 218, 265, 408
CviJI RGCY 7 cut(s) 57, 100, 152, 311, 388, 434, 462
CviKI_1 RGCY 7 cut(s) 57, 100, 152, 311, 388, 434, 462
CviQI GTAC 2 cut(s) 42, 90
DdeI CTNAG 3 cut(s) 96, 321, 437
DpnI GATC 4 cut(s) 7, 194, 278, 393
DpnII GATC 4 cut(s) 5, 192, 276, 391
Eco130I CCWWGG 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 4 cut(s) 199, 221, 268, 411
FaiI YATR 9 cut(s) 21, 33, 47, 165, 197, 219, 249, 266, 409
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FatI CATG 4 cut(s) 195, 217, 264, 407
FbaI TGATCA 1 cut(s) 192
Fnu4HI GCNGC 2 cut(s) 153, 335
Fsp4HI GCNGC 2 cut(s) 153, 335
GlaI GCGC 1 cut(s) 257
GluI GCNGC 2 cut(s) 153, 335
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 1 cut(s) 388
HapII CCGG 1 cut(s) 454
HhaI GCGC 1 cut(s) 258
Hin1II CATG 4 cut(s) 199, 221, 268, 411
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 1 cut(s) 180
HpaII CCGG 1 cut(s) 454
HphI GGTGA 1 cut(s) 369
Hpy188III TCNNGA 2 cut(s) 295, 363
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4V TGCA 8 cut(s) 19, 39, 84, 139, 155, 217, 268, 429
HpyF10VI GCNNNNNNNGC 1 cut(s) 459
HpyF3I CTNAG 3 cut(s) 96, 321, 437
Hsp92II CATG 4 cut(s) 199, 221, 268, 411
HspAI GCGC 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 192
Kzo9I GATC 4 cut(s) 5, 192, 276, 391
LmnI GCTCC 2 cut(s) 351, 467
LpnPI CCDG 9 cut(s) 122, 193, 213, 348, 366, 393, 402, 429, 467
Lsp1109I GCAGC 2 cut(s) 139, 346
LweI GCATC 1 cut(s) 482
MaeIII GTNAC 1 cut(s) 198
MalI GATC 4 cut(s) 7, 194, 278, 393
MboI GATC 4 cut(s) 5, 192, 276, 391
MflI RGATCY 2 cut(s) 5, 391
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 4 cut(s) 49, 71, 157, 302
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 4 cut(s) 264, 267, 342, 377
MseI TTAA 2 cut(s) 102, 305
MspCI CTTAAG 1 cut(s) 101
MspI CCGG 1 cut(s) 454
MspR9I CCNGG 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 459
NdeII GATC 4 cut(s) 5, 192, 276, 391
NlaIII CATG 4 cut(s) 199, 221, 268, 411
NspI RCATGY 1 cut(s) 221
PctI GAATGC 1 cut(s) 139
PkrI GCNGC 2 cut(s) 154, 336
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PshBI ATTAAT 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspPI GGNCC 1 cut(s) 386
PsuI RGATCY 2 cut(s) 5, 391
RsaI GTAC 2 cut(s) 43, 91
RsaNI GTAC 2 cut(s) 42, 90
SaqAI TTAA 2 cut(s) 102, 305
SatI GCNGC 2 cut(s) 153, 335
Sau3AI GATC 4 cut(s) 5, 192, 276, 391
Sau96I GGNCC 1 cut(s) 386
ScaI AGTACT 2 cut(s) 43, 91
SchI GAGTC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 356
SetI ASST 7 cut(s) 59, 102, 118, 247, 313, 436, 464
SfaNI GCATC 1 cut(s) 482
SmlI CTYRAG 2 cut(s) 101, 295
SmoI CTYRAG 2 cut(s) 101, 295
Sse9I AATT 4 cut(s) 49, 71, 157, 302
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 178
TasI AATT 4 cut(s) 49, 71, 157, 302
TatI WGTACW 2 cut(s) 41, 89
Tru1I TTAA 2 cut(s) 102, 305
Tru9I TTAA 2 cut(s) 102, 305
TscAI CASTG 1 cut(s) 232
TseI GCWGC 2 cut(s) 152, 334
TspRI CASTG 1 cut(s) 232
Vha464I CTTAAG 1 cut(s) 101
VspI ATTAAT 1 cut(s) 305
XapI RAATTY 1 cut(s) 49
XceI RCATGY 1 cut(s) 221
ZrmI AGTACT 2 cut(s) 43, 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.