Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0017540

Physical Location & Seq

Genomic Coordinates Forward (+)

7880640 .. 7880990

Gene Structure 351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G007420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCTGCAAATTACTATACTCTACTCATTCGAGTCTCAATGCTGATCATGTTACTTATCTGGTCATTGCATGTTGCCACTGGTTTGGAAGCAAAAGGTTATGGTGGGCGCAAGACCATGCAGAGGAGGATCAATAGCAAGACTATCTTGAGTGAATTAATAGCTGATTTGTCTAAGATGGAGAAGCAGCATTACAAAACGAGGAGCACATCGTCTGGAGACAGAGTTTCACCAGGAGGGCCAGATCCACAGCACAACTCATGCCCACCAGCATTACTCTGCAAAGCTCTTAGAAAGAATAAGTGCCGGAATAGCTCCACCACCACTACTACTAATGCTTGTAGATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.86

Weight (kDa)

9.98

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31083 AT2G31083 AT2G31085
prunus_persica	Prupe.4G060400_v2.0.a1 Prupe.4G170800_v2.0.a1
rosa_roxburghii	Rroxscaffold_1G00048800 Rroxscaffold_1G00066050
rosa_samantha	Rh5AG080200 Rh5CG088300 Rh5DG075600
rosa_wichuraiana	Rw5G007420 Rw5G020020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	137, 239
AfiI	CCNNNNNNNGG	1 cut(s)	123
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	3 cut(s)	164, 287, 315
AluI	AGCT	3 cut(s)	164, 287, 315
Alw21I	GWGCWC	1 cut(s)	209
Alw26I	GTCTC	2 cut(s)	40, 213
AlwI	GGATC	2 cut(s)	137, 239
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	5, 187
AseI	ATTAAT	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	222
BarI	GAAGNNNNNNTAC	2 cut(s)	176, 208
Bbv12I	GWGCWC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	234
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	2 cut(s)	40, 213
BisI	GCNGC	2 cut(s)	6, 188
BlsI	GCNGC	2 cut(s)	7, 189
Bme1390I	CCNGG	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	85
Bse3DI	GCAATG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	2 cut(s)	139, 217
BseXI	GCAGC	1 cut(s)	199
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	40, 213
BsnI	GGCC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	3 cut(s)	45, 129, 244
BspANI	GGCC	1 cut(s)	241
BspPI	GGATC	2 cut(s)	137, 239
BsrDI	GCAATG	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	3 cut(s)	45, 129, 244
Bst2UI	CCWGG	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	174, 290
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	3 cut(s)	48, 132, 247
BstMAI	GTCTC	2 cut(s)	40, 213
BstMBI	GATC	3 cut(s)	45, 129, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	244
BstXI	CCANNNNNNTGG	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	78
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	239
CviAII	CATG	4 cut(s)	49, 71, 118, 261
CviJI	RGCY	5 cut(s)	5, 164, 241, 287, 315
CviKI_1	RGCY	5 cut(s)	5, 164, 241, 287, 315
DdeI	CTNAG	2 cut(s)	174, 290
DpnI	GATC	3 cut(s)	47, 131, 246
DpnII	GATC	3 cut(s)	45, 129, 244
EcoRII	CCWGG	1 cut(s)	232
FaeI	CATG	4 cut(s)	52, 74, 121, 264
FaiI	YATR	6 cut(s)	18, 50, 72, 102, 119, 262
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FatI	CATG	4 cut(s)	48, 70, 117, 260
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	6, 188
Fsp4HI	GCNGC	2 cut(s)	6, 188
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	2 cut(s)	6, 188
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	1 cut(s)	307
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	4 cut(s)	52, 74, 121, 264
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	222
Hpy188III	TCNNGA	2 cut(s)	148, 216
HpyCH4V	TGCA	4 cut(s)	8, 70, 121, 282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
HpyF3I	CTNAG	2 cut(s)	174, 290
Hsp92II	CATG	4 cut(s)	52, 74, 121, 264
HspAI	GCGC	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	45, 129, 244
LmnI	GCTCC	2 cut(s)	204, 320
LpnPI	CCDG	8 cut(s)	46, 66, 201, 219, 246, 255, 282, 320
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	335
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	3 cut(s)	47, 131, 246
MboI	GATC	3 cut(s)	45, 129, 244
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	2 cut(s)	10, 155
MlyI	GAGTC	1 cut(s)	42
MnlI	CCTC	4 cut(s)	117, 120, 195, 230
MseI	TTAA	1 cut(s)	158
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	312
NdeII	GATC	3 cut(s)	45, 129, 244
NlaIII	CATG	4 cut(s)	52, 74, 121, 264
NspI	RCATGY	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	7, 189
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PshBI	ATTAAT	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	2 cut(s)	6, 188
Sau3AI	GATC	3 cut(s)	45, 129, 244
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	209
SetI	ASST	4 cut(s)	100, 166, 289, 317
SfaNI	GCATC	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	2 cut(s)	10, 155
StyD4I	CCNGG	1 cut(s)	232
TaqI	TCGA	1 cut(s)	31
TasI	AATT	2 cut(s)	10, 155
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	85
TseI	GCWGC	2 cut(s)	5, 187
TspRI	CASTG	1 cut(s)	85
VspI	ATTAAT	1 cut(s)	158
XceI	RCATGY	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.