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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G31340 |
| fragaria_vesca | FvH4_6g42100 |
| malus_domestica | MD09G1114700.v1.1 MD17G1106200.v1.1 |
| prunus_persica | Prupe.3G210000_v2.0.a1 Prupe.3G210000_v2.0.a1 Prupe.3G210000_v2.0.a1 Prupe.3G210000_v2.0.a1 Prupe.3G210000_v2.0.a1 |
| pyrus_communis | pycom09g03900 |
| rosa_chinensis | RchiOBHm_Chr2g0158021 |
| rosa_laevigata | RLG00000021050 |
| rosa_multiflora | Rmu_sc0000419.1_g000015 |
| rosa_roxburghii | Rroxscaffold_2G00091740 |
| rosa_rugosa | Rorug02G0465200 |
| rosa_samantha | Rh2AG531200 Rh2BG545700 Rh2CG515500 Rh2DG553800 |
| rosa_wichuraiana | Rw2G043930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 429 |
| AatII | GACGTC | 1 cut(s) | 251 |
| Acc16I | TGCGCA | 1 cut(s) | 198 |
| Acc36I | ACCTGC | 1 cut(s) | 1154 |
| AccBSI | CCGCTC | 1 cut(s) | 1582 |
| AccI | GTMKAC | 4 cut(s) | 145, 415, 904, 1502 |
| AccII | CGCG | 1 cut(s) | 1421 |
| AciI | CCGC | 5 cut(s) | 35, 1249, 1334, 1421, 1582 |
| AclWI | GGATC | 4 cut(s) | 127, 1340, 1353, 1508 |
| AcoI | YGGCCR | 2 cut(s) | 716, 1529 |
| AcsI | RAATTY | 4 cut(s) | 700, 1090, 1374, 1415 |
| AcuI | CTGAAG | 3 cut(s) | 404, 1030, 1452 |
| AcyI | GRCGYC | 2 cut(s) | 114, 248 |
| AfaI | GTAC | 4 cut(s) | 709, 851, 1168, 1275 |
| AfeI | AGCGCT | 1 cut(s) | 899 |
| AjnI | CCWGG | 1 cut(s) | 633 |
| Alw21I | GWGCWC | 2 cut(s) | 633, 1607 |
| Alw26I | GTCTC | 4 cut(s) | 457, 581, 841, 986 |
| Alw44I | GTGCAC | 1 cut(s) | 629 |
| AlwI | GGATC | 4 cut(s) | 127, 1340, 1353, 1508 |
| Ama87I | CYCGRG | 1 cut(s) | 299 |
| Aor51HI | AGCGCT | 1 cut(s) | 899 |
| AoxI | GGCC | 3 cut(s) | 167, 716, 1529 |
| ApaLI | GTGCAC | 1 cut(s) | 629 |
| ApeKI | GCWGC | 2 cut(s) | 358, 749 |
| ApoI | RAATTY | 4 cut(s) | 700, 1090, 1374, 1415 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 48 |
| AspLEI | GCGC | 3 cut(s) | 199, 900, 1120 |
| AspS9I | GGNCC | 3 cut(s) | 104, 167, 255 |
| AsuC2I | CCSGG | 1 cut(s) | 1637 |
| AsuHPI | GGTGA | 3 cut(s) | 16, 218, 1448 |
| AvaI | CYCGRG | 1 cut(s) | 299 |
| AvaII | GGWCC | 2 cut(s) | 104, 255 |
| BaeGI | GKGCMC | 1 cut(s) | 633 |
| BamHI | GGATCC | 1 cut(s) | 1345 |
| BanII | GRGCYC | 1 cut(s) | 1607 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1008, 1040 |
| BauI | CACGAG | 2 cut(s) | 108, 987 |
| BbsI | GAAGAC | 1 cut(s) | 1467 |
| Bbv12I | GWGCWC | 2 cut(s) | 633, 1607 |
| BbvCI | CCTCAGC | 1 cut(s) | 84 |
| BbvI | GCAGC | 2 cut(s) | 370, 736 |
| BccI | CCATC | 7 cut(s) | 225, 515, 996, 1144, 1378, 1525, 1560 |
| BceAI | ACGGC | 1 cut(s) | 703 |
| BciT130I | CCWGG | 1 cut(s) | 635 |
| BciVI | GTATCC | 1 cut(s) | 1488 |
| BcnI | CCSGG | 1 cut(s) | 1637 |
| BcoDI | GTCTC | 4 cut(s) | 457, 581, 841, 986 |
| BfaI | CTAG | 1 cut(s) | 41 |
| BfmI | CTRYAG | 3 cut(s) | 750, 1441, 1669 |
| BfoI | RGCGCY | 1 cut(s) | 901 |
| BfuAI | ACCTGC | 1 cut(s) | 1154 |
| BfuI | GTATCC | 1 cut(s) | 1488 |
| BglII | AGATCT | 1 cut(s) | 1452 |
| BisI | GCNGC | 4 cut(s) | 35, 359, 750, 1250 |
| BlsI | GCNGC | 4 cut(s) | 36, 360, 751, 1251 |
| Bme1390I | CCNGG | 2 cut(s) | 635, 1637 |
| Bme18I | GGWCC | 2 cut(s) | 104, 255 |
| BmeT110I | CYCGRG | 1 cut(s) | 299 |
| BmgT120I | GGNCC | 3 cut(s) | 104, 167, 255 |
| BmiI | GGNNCC | 2 cut(s) | 1035, 1347 |
| BmrFI | CCNGG | 2 cut(s) | 635, 1637 |
| BmsI | GCATC | 5 cut(s) | 1108, 1177, 1336, 1544, 1575 |
| BpiI | GAAGAC | 1 cut(s) | 1467 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 437, 469, 1315, 1347 |
| Bpu10I | CCTNAGC | 2 cut(s) | 84, 774 |
| BpuEI | CTTGAG | 4 cut(s) | 752, 996, 1469, 1524 |
| BpuMI | CCSGG | 1 cut(s) | 1637 |
| Bsa29I | ATCGAT | 1 cut(s) | 203 |
| BsaHI | GRCGYC | 2 cut(s) | 114, 248 |
| BsaJI | CCNNGG | 4 cut(s) | 100, 242, 634, 1636 |
| Bse1I | ACTGG | 1 cut(s) | 258 |
| Bse3DI | GCAATG | 4 cut(s) | 432, 654, 1068, 1236 |
| BseBI | CCWGG | 1 cut(s) | 635 |
| BseCI | ATCGAT | 1 cut(s) | 203 |
| BseDI | CCNNGG | 4 cut(s) | 100, 242, 634, 1636 |
| BseGI | GGATG | 8 cut(s) | 93, 217, 1007, 1192, 1327, 1572, 1590, 1632 |
| BseMI | GCAATG | 4 cut(s) | 432, 654, 1068, 1236 |
| BseMII | CTCAG | 5 cut(s) | 98, 852, 1332, 1353, 1520 |
| BseNI | ACTGG | 1 cut(s) | 258 |
| BseSI | GKGCMC | 1 cut(s) | 633 |
| BseXI | GCAGC | 2 cut(s) | 370, 736 |
| BseYI | CCCAGC | 1 cut(s) | 294 |
| BsgI | GTGCAG | 1 cut(s) | 387 |
| Bsh1236I | CGCG | 1 cut(s) | 1421 |
| BshFI | GGCC | 3 cut(s) | 169, 718, 1531 |
| BshVI | ATCGAT | 1 cut(s) | 203 |
| BsiHKAI | GWGCWC | 2 cut(s) | 633, 1607 |
| BsiHKCI | CYCGRG | 1 cut(s) | 299 |
| BsiSI | CCGG | 2 cut(s) | 1528, 1636 |
| BsmAI | GTCTC | 4 cut(s) | 457, 581, 841, 986 |
| BsmI | GAATGC | 1 cut(s) | 1287 |
| BsnI | GGCC | 3 cut(s) | 169, 718, 1531 |
| BsoBI | CYCGRG | 1 cut(s) | 299 |
| Bsp1286I | GDGCHC | 2 cut(s) | 633, 1607 |
| Bsp143I | GATC | 5 cut(s) | 132, 223, 1345, 1452, 1513 |
| Bsp19I | CCATGG | 2 cut(s) | 100, 242 |
| BspACI | CCGC | 5 cut(s) | 35, 1249, 1334, 1421, 1582 |
| BspANI | GGCC | 3 cut(s) | 169, 718, 1531 |
| BspCNI | CTCAG | 5 cut(s) | 97, 851, 1333, 1354, 1519 |
| BspDI | ATCGAT | 1 cut(s) | 203 |
| BspFNI | CGCG | 1 cut(s) | 1421 |
| BspLI | GGNNCC | 2 cut(s) | 1035, 1347 |
| BspMAI | CTGCAG | 1 cut(s) | 754 |
| BspMI | ACCTGC | 1 cut(s) | 1154 |
| BspPI | GGATC | 4 cut(s) | 127, 1340, 1353, 1508 |
| BsrBI | CCGCTC | 1 cut(s) | 1582 |
| BsrDI | GCAATG | 4 cut(s) | 432, 654, 1068, 1236 |
| BsrI | ACTGG | 1 cut(s) | 258 |
| BssECI | CCNNGG | 4 cut(s) | 100, 242, 634, 1636 |
| BssMI | GATC | 5 cut(s) | 132, 223, 1345, 1452, 1513 |
| BssNAI | GTATAC | 2 cut(s) | 416, 1503 |
| BssNI | GRCGYC | 2 cut(s) | 114, 248 |
| BssSI | CACGAG | 2 cut(s) | 108, 987 |
| BssT1I | CCWWGG | 2 cut(s) | 100, 242 |
| Bst1107I | GTATAC | 2 cut(s) | 416, 1503 |
| Bst2BI | CACGAG | 2 cut(s) | 108, 987 |
| Bst2UI | CCWGG | 1 cut(s) | 635 |
| Bst4CI | ACNGT | 7 cut(s) | 49, 77, 143, 273, 835, 1260, 1500 |
| Bst6I | CTCTTC | 3 cut(s) | 534, 561, 800 |
| BstACI | GRCGYC | 2 cut(s) | 114, 248 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1660 |
| BstC8I | GCNNGC | 2 cut(s) | 181, 356 |
| BstDEI | CTNAG | 6 cut(s) | 84, 774, 838, 1341, 1362, 1506 |
| BstDSI | CCRYGG | 2 cut(s) | 100, 242 |
| BstF5I | GGATG | 8 cut(s) | 93, 217, 1007, 1192, 1327, 1572, 1590, 1632 |
| BstFNI | CGCG | 1 cut(s) | 1421 |
| BstH2I | RGCGCY | 1 cut(s) | 901 |
| BstHHI | GCGC | 3 cut(s) | 199, 900, 1120 |
| BstKTI | GATC | 5 cut(s) | 135, 226, 1348, 1455, 1516 |
| BstMAI | GTCTC | 4 cut(s) | 457, 581, 841, 986 |
| BstMBI | GATC | 5 cut(s) | 132, 223, 1345, 1452, 1513 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 485, 887, 1117, 1196, 1333, 1660 |
| BstNI | CCWGG | 1 cut(s) | 635 |
| BstSCI | CCNGG | 2 cut(s) | 633, 1635 |
| BstSFI | CTRYAG | 3 cut(s) | 750, 1441, 1669 |
| BstSLI | GKGCMC | 1 cut(s) | 633 |
| BstUI | CGCG | 1 cut(s) | 1421 |
| BstV1I | GCAGC | 2 cut(s) | 370, 736 |
| BstV2I | GAAGAC | 1 cut(s) | 1467 |
| BstX2I | RGATCY | 3 cut(s) | 1345, 1452, 1513 |
| BstYI | RGATCY | 3 cut(s) | 1345, 1452, 1513 |
| BstZ17I | GTATAC | 2 cut(s) | 416, 1503 |
| Bsu15I | ATCGAT | 1 cut(s) | 203 |
| BsuI | GTATCC | 1 cut(s) | 1488 |
| BsuRI | GGCC | 3 cut(s) | 169, 718, 1531 |
| BsuTUI | ATCGAT | 1 cut(s) | 203 |
| BtgI | CCRYGG | 2 cut(s) | 100, 242 |
| BtsCI | GGATG | 8 cut(s) | 93, 217, 1007, 1192, 1327, 1572, 1590, 1632 |
| BtsIMutI | CAGTG | 3 cut(s) | 265, 1054, 1266 |
| BveI | ACCTGC | 1 cut(s) | 1154 |
| Cac8I | GCNNGC | 2 cut(s) | 181, 356 |
| CfoI | GCGC | 3 cut(s) | 199, 900, 1120 |
| Cfr13I | GGNCC | 3 cut(s) | 104, 167, 255 |
| ClaI | ATCGAT | 1 cut(s) | 203 |
| CseI | GACGC | 2 cut(s) | 103, 831 |
| Csp6I | GTAC | 4 cut(s) | 708, 850, 1167, 1274 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 258, 293 |
| CviAII | CATG | 7 cut(s) | 62, 101, 243, 705, 854, 1030, 1320 |
| CviQI | GTAC | 4 cut(s) | 708, 850, 1167, 1274 |
| DdeI | CTNAG | 6 cut(s) | 84, 774, 838, 1341, 1362, 1506 |
| DpnI | GATC | 5 cut(s) | 134, 225, 1347, 1454, 1515 |
| DpnII | GATC | 5 cut(s) | 132, 223, 1345, 1452, 1513 |
| EaeI | YGGCCR | 2 cut(s) | 716, 1529 |
| Eam1104I | CTCTTC | 3 cut(s) | 534, 561, 800 |
| EarI | CTCTTC | 3 cut(s) | 534, 561, 800 |
| Ecl136II | GAGCTC | 1 cut(s) | 1605 |
| Eco130I | CCWWGG | 2 cut(s) | 100, 242 |
| Eco24I | GRGCYC | 1 cut(s) | 1607 |
| Eco47I | GGWCC | 2 cut(s) | 104, 255 |
| Eco47III | AGCGCT | 1 cut(s) | 899 |
| Eco53kI | GAGCTC | 1 cut(s) | 1605 |
| Eco57I | CTGAAG | 3 cut(s) | 404, 1030, 1452 |
| Eco88I | CYCGRG | 1 cut(s) | 299 |
| EcoICRI | GAGCTC | 1 cut(s) | 1605 |
| EcoRI | GAATTC | 3 cut(s) | 700, 1090, 1415 |
| EcoRII | CCWGG | 1 cut(s) | 633 |
| EcoT14I | CCWWGG | 2 cut(s) | 100, 242 |
| EcoT22I | ATGCAT | 1 cut(s) | 1192 |
| EcoT38I | GRGCYC | 1 cut(s) | 1607 |
| ErhI | CCWWGG | 2 cut(s) | 100, 242 |
| FaeI | CATG | 7 cut(s) | 65, 104, 246, 708, 857, 1033, 1323 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 767, 799 |
| FatI | CATG | 7 cut(s) | 61, 100, 242, 704, 853, 1029, 1319 |
| FblI | GTMKAC | 4 cut(s) | 145, 415, 904, 1502 |
| Fnu4HI | GCNGC | 4 cut(s) | 35, 359, 750, 1250 |
| FokI | GGATG | 8 cut(s) | 80, 204, 1014, 1199, 1314, 1559, 1597, 1619 |
| FriOI | GRGCYC | 1 cut(s) | 1607 |
| Fsp4HI | GCNGC | 4 cut(s) | 35, 359, 750, 1250 |
| FspBI | CTAG | 1 cut(s) | 41 |
| FspI | TGCGCA | 1 cut(s) | 198 |
| GlaI | GCGC | 3 cut(s) | 198, 899, 1119 |
| GluI | GCNGC | 4 cut(s) | 35, 359, 750, 1250 |
| GsaI | CCCAGC | 1 cut(s) | 298 |
| HaeII | RGCGCY | 1 cut(s) | 901 |
| HaeIII | GGCC | 3 cut(s) | 169, 718, 1531 |
| HapII | CCGG | 2 cut(s) | 1528, 1636 |
| HgaI | GACGC | 2 cut(s) | 103, 831 |
| HhaI | GCGC | 3 cut(s) | 199, 900, 1120 |
| Hin1I | GRCGYC | 2 cut(s) | 114, 248 |
| Hin1II | CATG | 7 cut(s) | 65, 104, 246, 708, 857, 1033, 1323 |
| Hin6I | GCGC | 3 cut(s) | 197, 898, 1118 |
| HinP1I | GCGC | 3 cut(s) | 197, 898, 1118 |
| HincII | GTYRAC | 2 cut(s) | 265, 958 |
| HindII | GTYRAC | 2 cut(s) | 265, 958 |
| HinfI | GANTC | 5 cut(s) | 314, 322, 827, 1006, 1629 |
| HpaII | CCGG | 2 cut(s) | 1528, 1636 |
| HphI | GGTGA | 3 cut(s) | 16, 218, 1448 |
| Hpy166II | GTNNAC | 8 cut(s) | 146, 265, 416, 631, 905, 958, 1062, 1503 |
| Hpy188I | TCNGA | 5 cut(s) | 152, 819, 928, 1057, 1363 |
| Hpy8I | GTNNAC | 8 cut(s) | 146, 265, 416, 631, 905, 958, 1062, 1503 |
| Hpy99I | CGWCG | 2 cut(s) | 119, 414 |
| HpyAV | CCTTC | 1 cut(s) | 1476 |
| HpyCH4III | ACNGT | 7 cut(s) | 49, 77, 143, 273, 835, 1260, 1500 |
| HpyCH4IV | ACGT | 2 cut(s) | 248, 1306 |
| HpyCH4V | TGCA | 7 cut(s) | 288, 404, 631, 752, 1190, 1229, 1588 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 485, 887, 1117, 1196, 1333, 1660 |
| HpyF3I | CTNAG | 6 cut(s) | 84, 774, 838, 1341, 1362, 1506 |
| HpySE526I | ACGT | 2 cut(s) | 248, 1306 |
| Hsp92I | GRCGYC | 2 cut(s) | 114, 248 |
| Hsp92II | CATG | 7 cut(s) | 65, 104, 246, 708, 857, 1033, 1323 |
| HspAI | GCGC | 3 cut(s) | 197, 898, 1118 |
| Kzo9I | GATC | 5 cut(s) | 132, 223, 1345, 1452, 1513 |
| LmnI | GCTCC | 1 cut(s) | 1602 |
| Lsp1109I | GCAGC | 2 cut(s) | 370, 736 |
| LweI | GCATC | 5 cut(s) | 1108, 1177, 1336, 1544, 1575 |
| MaeI | CTAG | 1 cut(s) | 41 |
| MaeII | ACGT | 2 cut(s) | 248, 1306 |
| MaeIII | GTNAC | 3 cut(s) | 323, 919, 1436 |
| MalI | GATC | 5 cut(s) | 134, 225, 1347, 1454, 1515 |
| MbiI | CCGCTC | 1 cut(s) | 1582 |
| MboI | GATC | 5 cut(s) | 132, 223, 1345, 1452, 1513 |
| MboII | GAAGA | 7 cut(s) | 31, 551, 578, 757, 817, 1187, 1472 |
| MfeI | CAATTG | 1 cut(s) | 283 |
| MflI | RGATCY | 3 cut(s) | 1345, 1452, 1513 |
| MhlI | GDGCHC | 2 cut(s) | 633, 1607 |
| MlyI | GAGTC | 1 cut(s) | 331 |
| MmeI | TCCRAC | 2 cut(s) | 91, 620 |
| Mph1103I | ATGCAT | 1 cut(s) | 1192 |
| MroXI | GAANNNNTTC | 1 cut(s) | 48 |
| MseI | TTAA | 8 cut(s) | 396, 602, 624, 666, 1122, 1221, 1548, 1658 |
| MslI | CAYNNNNRTG | 3 cut(s) | 241, 374, 1000 |
| MspA1I | CMGCKG | 1 cut(s) | 1381 |
| MspI | CCGG | 2 cut(s) | 1528, 1636 |
| MspR9I | CCNGG | 2 cut(s) | 635, 1637 |
| MunI | CAATTG | 1 cut(s) | 283 |
| Mva1269I | GAATGC | 1 cut(s) | 1287 |
| MvaI | CCWGG | 1 cut(s) | 635 |
| MvnI | CGCG | 1 cut(s) | 1421 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 485, 887, 1117, 1196, 1333, 1660 |
| NciI | CCSGG | 1 cut(s) | 1637 |
| NcoI | CCATGG | 2 cut(s) | 100, 242 |
| NdeII | GATC | 5 cut(s) | 132, 223, 1345, 1452, 1513 |
| NlaIII | CATG | 7 cut(s) | 65, 104, 246, 708, 857, 1033, 1323 |
| NlaIV | GGNNCC | 2 cut(s) | 1035, 1347 |
| NmeAIII | GCCGAG | 1 cut(s) | 1075 |
| NmuCI | GTSAC | 3 cut(s) | 323, 919, 1436 |
| NsbI | TGCGCA | 1 cut(s) | 198 |
| NsiI | ATGCAT | 1 cut(s) | 1192 |
| PaeR7I | CTCGAG | 1 cut(s) | 299 |
| PctI | GAATGC | 1 cut(s) | 1287 |
| PdmI | GAANNNNTTC | 1 cut(s) | 48 |
| PfeI | GAWTC | 4 cut(s) | 314, 827, 1006, 1629 |
| PkrI | GCNGC | 4 cut(s) | 36, 360, 751, 1251 |
| PleI | GAGTC | 1 cut(s) | 330 |
| PpsI | GAGTC | 1 cut(s) | 330 |
| PsiI | TTATAA | 1 cut(s) | 429 |
| Psp124BI | GAGCTC | 1 cut(s) | 1607 |
| Psp6I | CCWGG | 1 cut(s) | 633 |
| PspFI | CCCAGC | 1 cut(s) | 294 |
| PspGI | CCWGG | 1 cut(s) | 633 |
| PspN4I | GGNNCC | 2 cut(s) | 1035, 1347 |
| PspPI | GGNCC | 3 cut(s) | 104, 167, 255 |
| PstI | CTGCAG | 1 cut(s) | 754 |
| PsuI | RGATCY | 3 cut(s) | 1345, 1452, 1513 |
| PvuII | CAGCTG | 1 cut(s) | 1381 |
| RsaI | GTAC | 4 cut(s) | 709, 851, 1168, 1275 |
| RsaNI | GTAC | 4 cut(s) | 708, 850, 1167, 1274 |
| RseI | CAYNNNNRTG | 3 cut(s) | 241, 374, 1000 |
| SacI | GAGCTC | 1 cut(s) | 1607 |
| SaqAI | TTAA | 8 cut(s) | 396, 602, 624, 666, 1122, 1221, 1548, 1658 |
| SatI | GCNGC | 4 cut(s) | 35, 359, 750, 1250 |
| Sau3AI | GATC | 5 cut(s) | 132, 223, 1345, 1452, 1513 |
| Sau96I | GGNCC | 3 cut(s) | 104, 167, 255 |
| SchI | GAGTC | 1 cut(s) | 331 |
| ScrFI | CCNGG | 2 cut(s) | 635, 1637 |
| SduI | GDGCHC | 2 cut(s) | 633, 1607 |
| SfaNI | GCATC | 5 cut(s) | 1108, 1177, 1336, 1544, 1575 |
| SfcI | CTRYAG | 3 cut(s) | 750, 1441, 1669 |
| Sfr274I | CTCGAG | 1 cut(s) | 299 |
| SinI | GGWCC | 2 cut(s) | 104, 255 |
| SlaI | CTCGAG | 1 cut(s) | 299 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 241, 374, 1000 |
| SmlI | CTYRAG | 5 cut(s) | 299, 731, 1011, 1448, 1539 |
| SmoI | CTYRAG | 5 cut(s) | 299, 731, 1011, 1448, 1539 |
| SsiI | CCGC | 5 cut(s) | 35, 1249, 1334, 1421, 1582 |
| SspI | AATATT | 1 cut(s) | 1616 |
| SspMI | CTAG | 1 cut(s) | 41 |
| SstI | GAGCTC | 1 cut(s) | 1607 |
| StyD4I | CCNGG | 2 cut(s) | 633, 1635 |
| StyI | CCWWGG | 2 cut(s) | 100, 242 |
| TaaI | ACNGT | 7 cut(s) | 49, 77, 143, 273, 835, 1260, 1500 |
| TaiI | ACGT | 2 cut(s) | 251, 1309 |
| TaqI | TCGA | 5 cut(s) | 203, 300, 499, 670, 686 |
| TatI | WGTACW | 1 cut(s) | 707 |
| TauI | GCSGC | 2 cut(s) | 37, 1252 |
| TfiI | GAWTC | 4 cut(s) | 314, 827, 1006, 1629 |
| Tru1I | TTAA | 8 cut(s) | 396, 602, 624, 666, 1122, 1221, 1548, 1658 |
| Tru9I | TTAA | 8 cut(s) | 396, 602, 624, 666, 1122, 1221, 1548, 1658 |
| TscAI | CASTG | 3 cut(s) | 265, 1054, 1273 |
| TseFI | GTSAC | 3 cut(s) | 323, 919, 1436 |
| TseI | GCWGC | 2 cut(s) | 358, 749 |
| Tsp45I | GTSAC | 3 cut(s) | 323, 919, 1436 |
| TspDTI | ATGAA | 7 cut(s) | 392, 450, 693, 930, 970, 1308, 1311 |
| TspGWI | ACGGA | 3 cut(s) | 224, 550, 1281 |
| TspRI | CASTG | 3 cut(s) | 265, 1054, 1273 |
| VneI | GTGCAC | 1 cut(s) | 629 |
| VpaK11BI | GGWCC | 2 cut(s) | 104, 255 |
| XapI | RAATTY | 4 cut(s) | 700, 1090, 1374, 1415 |
| XbaI | TCTAGA | 1 cut(s) | 40 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 107, 249 |
| XhoI | CTCGAG | 1 cut(s) | 299 |
| XmiI | GTMKAC | 4 cut(s) | 145, 415, 904, 1502 |
| XmnI | GAANNNNTTC | 1 cut(s) | 48 |
| XspI | CTAG | 1 cut(s) | 41 |
| ZraI | GACGTC | 1 cut(s) | 249 |
| Zsp2I | ATGCAT | 1 cut(s) | 1192 |