Prupe.3G210000_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
21554282 .. 21559510
5229 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G210000.1

Sequence Viewer

Length: 1695 bp
ATGGTGAACAAACCATGGAGGATCATACCAAGGCCATTGATAGAAACAGTGCTAAACAACCACGCTCAGCACCACCGTGTTCCTCAGCCTCTGATCCTCCACGGCCCCAGAGGCGTCGGAAAAACCACTCTCATCCTCGAACGTCTGCTCAACGACTGGAACAAAGGCCCTCACCTCACTGGCTACGTAGACTTCGCCGAGTCCATCAAAGACCACCACCCACAATTCAATCAGTCGTTTCCTTGGGCTTCTTGGTCCAATTGCCCACCACCCACTTTGTCCGATTGCAGAACCAAGCTTGAGTGCTGCCTCGAATCCATGACTCACGAGGGCGTCCAGCTTGGTTCCATTAGCTCCCATCAAATTTTCTCTACTCTCAACAAATGGCACGGTATTAACACGGCTCTCCGCCGCGTTATTGAGGGCAATAGTGCGTCCAAGAATGCGGTTTCTGATAGAGTTTCGGGTTCTGTTTTGTGGGATCGGGCCGTTTTCGCTCTAAGTGCTCGATGTAATGCCGAAGAGATTGATGGGATTTTGGGTTTGCGTGAGAAGCGGAAGAGTTTGCCATTGGAAGAGGCTTCGTATTATAGGGAAGCTGTAGTGGCATTGAGATTGGCAAAGGAGGTGATTAAGGTCCAACAAAGTTGGAGGGCTAATGCTATTGCACATTTAAATCGGACAGGTGGGTTTTCGAGGTTTTTAGCAAATTCGTGCACTGATTGGCCCTGTTTGTTGTTGGAGTTGTTATCTCAAGCTGCTGAAATTGATCATTTCCAGCCTAAGCTGGTTATAAACAATATCGAAGTTTTACGGAATGCAATTTTGTTAGATGAGAATTCGTCAGTCTGTGGATCAATGTATCATGACAGTCTGATATGGAGAATAATAGCTTTAGGTGCAAACGAGAGGTGCATTCCTGTTGTTCTTGTGACATCAGATAGTTACTATTCATACCGGGCTTACATGGATTTTGGATTTCCAGACATATTCATCTCTCGTGAGACCTTTGGCTGGAATCCCCAAGAAGCTAAATTGCATATGGTTAATGATTATTTCAGTCAATCAGAGTGGTTGGTTATTGCTGAAGTGTTTGGTCCAAACCTTAGACACTTATTTGAGCTATATGCACTCAAGCAGGGCAATTACTATCAGCAGTTAGAGGACAACAAAGATAGCACATTTGAGGACATTGTGGATGCATATTTAGCATATTTGCAAATTACTGTAGTGAATCCTGCCATGGAGAAAGCACTGGGGCTTCTACAAAAGTTTGCTGTTGATGCACATAGTGGAAAAATTTCAAAAGACAGACTACGCTTTGGTGCACCTTGGAGACATCCTCCACCAACAGATGATCCTGCCTTGTGCCGTCAATGGGCAAAGGTTCAGCTGATGGATTTTGTGCAGTCCCTAGTCAATACAGAATTTGGAGTTAATTATCTAGCTGACTGTAGCCTTGAGCTCTTGGATGATCCTTCTACTGTTGCATTGTTGGAGGTTGGTTTGCTCTATGCTCAACGGGATCCATCCATCATTCGCCCCATATCTAGGGGAATTCAGCGATGCATTGTAAGATGGCTTGTCCAAGAAAGGATGCAGATGAGTTCCCCGAAGTTGCTCCAATATCTATGGCAGCGTATTATGCGTGGCCGTAGCTATCGTCATTTGATGCTACAAGTAGGCTATAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

565

Amino Acids

64.49

Weight (kDa)

7.61

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 794
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 414
AciI CCGC 4 cut(s) 409, 412, 446, 556
AclWI GGATC 8 cut(s) 29, 88, 489, 862, 1352, 1469, 1520, 1533
AcoI YGGCCR 1 cut(s) 1651
AcsI RAATTY 6 cut(s) 363, 709, 838, 1299, 1427, 1557
AcuI CTGAAG 1 cut(s) 1107
AcyI GRCGYC 2 cut(s) 114, 333
AdeI CACNNNGTG 1 cut(s) 1292
AfiI CCNNNNNNNGG 3 cut(s) 1014, 1378, 1551
AgsI TTSAA 2 cut(s) 229, 1305
AleI CACNNNNGTG 1 cut(s) 75
Alw21I GWGCWC 4 cut(s) 508, 719, 1330, 1467
Alw26I GTCTC 2 cut(s) 998, 1330
Alw44I GTGCAC 2 cut(s) 715, 1326
AlwI GGATC 8 cut(s) 29, 88, 489, 862, 1352, 1469, 1520, 1533
AlwNI CAGNNNCTG 1 cut(s) 91
AoxI GGCC 6 cut(s) 32, 103, 166, 486, 725, 1651
ApaLI GTGCAC 2 cut(s) 715, 1326
ApeKI GCWGC 3 cut(s) 306, 758, 1636
ApoI RAATTY 6 cut(s) 363, 709, 838, 1299, 1427, 1557
Asp700I GAANNNNTTC 1 cut(s) 1300
AspS9I GGNCC 7 cut(s) 104, 167, 255, 486, 637, 726, 1097
AsuC2I CCSGG 1 cut(s) 959
AsuHPI GGTGA 3 cut(s) 16, 164, 640
AvaII GGWCC 3 cut(s) 255, 637, 1097
BaeGI GKGCMC 2 cut(s) 719, 1330
BamHI GGATCC 1 cut(s) 1525
BanII GRGCYC 1 cut(s) 1467
BauI CACGAG 2 cut(s) 326, 999
Bbv12I GWGCWC 4 cut(s) 508, 719, 1330, 1467
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 293, 745, 1648
BccI CCATC 7 cut(s) 212, 366, 524, 1390, 1537, 1541, 1572
BceAI ACGGC 5 cut(s) 118, 417, 473, 1356, 1638
BclI TGATCA 1 cut(s) 769
BcnI CCSGG 1 cut(s) 959
BcoDI GTCTC 2 cut(s) 998, 1330
BfaI CTAG 3 cut(s) 1415, 1445, 1551
BfmI CTRYAG 3 cut(s) 600, 1227, 1453
BglI GCCNNNNNGGC 1 cut(s) 111
BisI GCNGC 4 cut(s) 307, 412, 759, 1637
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 4 cut(s) 308, 413, 760, 1638
Bme1390I CCNGG 1 cut(s) 959
Bme18I GGWCC 3 cut(s) 255, 637, 1097
BmgT120I GGNCC 7 cut(s) 104, 167, 255, 486, 637, 726, 1097
BmiI GGNNCC 3 cut(s) 106, 346, 1527
BmrFI CCNGG 1 cut(s) 959
BmrI ACTGGG 1 cut(s) 1265
BmsI GCATC 5 cut(s) 1189, 1273, 1556, 1587, 1662
BmuI ACTGGG 1 cut(s) 1265
BplI GAGNNNNNCTC 2 cut(s) 1327, 1359
Bpu10I CCTNAGC 2 cut(s) 84, 783
Bpu1102I GCTNAGC 1 cut(s) 66
BpuEI CTTGAG 4 cut(s) 320, 738, 1118, 1481
BpuMI CCSGG 1 cut(s) 959
BsaAI YACGTR 1 cut(s) 187
BsaHI GRCGYC 2 cut(s) 114, 333
BsaI GGTCTC 1 cut(s) 998
BsaJI CCNNGG 6 cut(s) 14, 29, 100, 242, 1242, 1331
Bsc4I CCNNNNNNNGG 3 cut(s) 1014, 1378, 1551
Bse1I ACTGG 3 cut(s) 161, 184, 1260
BseDI CCNNGG 6 cut(s) 14, 29, 100, 242, 1242, 1331
BseGI GGATG 6 cut(s) 132, 1204, 1339, 1477, 1529, 1602
BseLI CCNNNNNNNGG 3 cut(s) 1014, 1378, 1551
BseMII CTCAG 2 cut(s) 80, 98
BseNI ACTGG 3 cut(s) 161, 184, 1260
BseSI GKGCMC 2 cut(s) 719, 1330
BseXI GCAGC 3 cut(s) 293, 745, 1648
BsgI GTGCAG 1 cut(s) 1427
Bsh1236I CGCG 1 cut(s) 414
BshFI GGCC 6 cut(s) 34, 105, 168, 488, 727, 1653
BsiHKAI GWGCWC 4 cut(s) 508, 719, 1330, 1467
BsiSI CCGG 1 cut(s) 958
BslFI GGGAC 1 cut(s) 1396
BslI CCNNNNNNNGG 3 cut(s) 1014, 1378, 1551
BsmAI GTCTC 2 cut(s) 998, 1330
BsmFI GGGAC 1 cut(s) 1396
BsmI GAATGC 3 cut(s) 448, 823, 915
BsnI GGCC 6 cut(s) 34, 105, 168, 488, 727, 1653
Bso31I GGTCTC 1 cut(s) 998
Bsp1286I GDGCHC 4 cut(s) 508, 719, 1330, 1467
Bsp143I GATC 8 cut(s) 21, 93, 481, 769, 854, 1357, 1474, 1525
Bsp1720I GCTNAGC 1 cut(s) 66
Bsp19I CCATGG 2 cut(s) 14, 1242
BspACI CCGC 4 cut(s) 409, 412, 446, 556
BspANI GGCC 6 cut(s) 34, 105, 168, 488, 727, 1653
BspCNI CTCAG 2 cut(s) 79, 97
BspFNI CGCG 1 cut(s) 414
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 3 cut(s) 106, 346, 1527
BspPI GGATC 8 cut(s) 29, 88, 489, 862, 1352, 1469, 1520, 1533
BspTNI GGTCTC 1 cut(s) 998
BsrI ACTGG 3 cut(s) 161, 184, 1260
BssECI CCNNGG 6 cut(s) 14, 29, 100, 242, 1242, 1331
BssMI GATC 8 cut(s) 21, 93, 481, 769, 854, 1357, 1474, 1525
BssNI GRCGYC 2 cut(s) 114, 333
BssSI CACGAG 2 cut(s) 326, 999
BssT1I CCWWGG 5 cut(s) 14, 29, 242, 1242, 1331
Bst2BI CACGAG 2 cut(s) 326, 999
Bst4CI ACNGT 7 cut(s) 49, 77, 392, 872, 1228, 1454, 1486
Bst6I CTCTTC 3 cut(s) 516, 554, 570
BstACI GRCGYC 2 cut(s) 114, 333
BstBAI YACGTR 1 cut(s) 187
BstDEI CTNAG 5 cut(s) 66, 84, 500, 783, 1106
BstDSI CCRYGG 3 cut(s) 14, 100, 1242
BstF5I GGATG 6 cut(s) 132, 1204, 1339, 1477, 1529, 1602
BstFNI CGCG 1 cut(s) 414
BstKTI GATC 8 cut(s) 24, 96, 484, 772, 857, 1360, 1477, 1528
BstMAI GTCTC 2 cut(s) 998, 1330
BstMBI GATC 8 cut(s) 21, 93, 481, 769, 854, 1357, 1474, 1525
BstMWI GCNNNNNNNGC 9 cut(s) 111, 494, 503, 553, 605, 899, 1208, 1283, 1645
BstSCI CCNGG 1 cut(s) 957
BstSFI CTRYAG 3 cut(s) 600, 1227, 1453
BstSLI GKGCMC 2 cut(s) 719, 1330
BstSNI TACGTA 1 cut(s) 187
BstUI CGCG 1 cut(s) 414
BstV1I GCAGC 3 cut(s) 293, 745, 1648
BstX2I RGATCY 1 cut(s) 1525
BstYI RGATCY 1 cut(s) 1525
BsuRI GGCC 6 cut(s) 34, 105, 168, 488, 727, 1653
BtgI CCRYGG 3 cut(s) 14, 100, 1242
BtgZI GCGATG 1 cut(s) 1579
BtsCI GGATG 6 cut(s) 132, 1204, 1339, 1477, 1529, 1602
BtsIMutI CAGTG 4 cut(s) 54, 177, 717, 1253
CaiI CAGNNNCTG 1 cut(s) 91
CciI TCATGA 1 cut(s) 865
Cfr13I GGNCC 7 cut(s) 104, 167, 255, 486, 637, 726, 1097
CseI GACGC 3 cut(s) 103, 322, 423
CspCI CAANNNNNGTGG 4 cut(s) 258, 293, 1052, 1087
CviAII CATG 5 cut(s) 15, 319, 866, 967, 1243
DdeI CTNAG 5 cut(s) 66, 84, 500, 783, 1106
DpnI GATC 8 cut(s) 23, 95, 483, 771, 856, 1359, 1476, 1527
DpnII GATC 8 cut(s) 21, 93, 481, 769, 854, 1357, 1474, 1525
DraI TTTAAA 1 cut(s) 675
DraIII CACNNNGTG 1 cut(s) 1292
EaeI YGGCCR 1 cut(s) 1651
Eam1104I CTCTTC 3 cut(s) 516, 554, 570
EarI CTCTTC 3 cut(s) 516, 554, 570
EciI GGCGGA 1 cut(s) 398
Ecl136II GAGCTC 1 cut(s) 1465
Eco105I TACGTA 1 cut(s) 187
Eco130I CCWWGG 5 cut(s) 14, 29, 242, 1242, 1331
Eco24I GRGCYC 1 cut(s) 1467
Eco31I GGTCTC 1 cut(s) 998
Eco47I GGWCC 3 cut(s) 255, 637, 1097
Eco53kI GAGCTC 1 cut(s) 1465
Eco57I CTGAAG 1 cut(s) 1107
EcoICRI GAGCTC 1 cut(s) 1465
EcoO109I RGGNCCY 1 cut(s) 167
EcoRI GAATTC 2 cut(s) 838, 1557
EcoT14I CCWWGG 5 cut(s) 14, 29, 242, 1242, 1331
EcoT22I ATGCAT 2 cut(s) 1204, 1571
EcoT38I GRGCYC 1 cut(s) 1467
ErhI CCWWGG 5 cut(s) 14, 29, 242, 1242, 1331
FaeI CATG 5 cut(s) 18, 322, 869, 970, 1246
FaqI GGGAC 1 cut(s) 1396
FatI CATG 5 cut(s) 14, 318, 865, 966, 1242
FauNDI CATATG 1 cut(s) 1041
FbaI TGATCA 1 cut(s) 769
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 4 cut(s) 307, 412, 759, 1637
FokI GGATG 6 cut(s) 119, 1211, 1326, 1484, 1516, 1609
FriOI GRGCYC 1 cut(s) 1467
Fsp4HI GCNGC 4 cut(s) 307, 412, 759, 1637
FspBI CTAG 3 cut(s) 1415, 1445, 1551
GluI GCNGC 4 cut(s) 307, 412, 759, 1637
HaeIII GGCC 6 cut(s) 34, 105, 168, 488, 727, 1653
HapII CCGG 1 cut(s) 958
HgaI GACGC 3 cut(s) 103, 322, 423
Hin1I GRCGYC 2 cut(s) 114, 333
Hin1II CATG 5 cut(s) 18, 322, 869, 970, 1246
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 5 cut(s) 200, 314, 322, 1018, 1234
HpaII CCGG 1 cut(s) 958
HphI GGTGA 3 cut(s) 16, 164, 640
Hpy166II GTNNAC 4 cut(s) 7, 190, 717, 1328
Hpy188I TCNGA 8 cut(s) 93, 119, 283, 454, 681, 876, 940, 1069
Hpy188III TCNNGA 4 cut(s) 326, 866, 983, 1001
Hpy8I GTNNAC 4 cut(s) 7, 190, 717, 1328
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 1488
HpyCH4III ACNGT 7 cut(s) 49, 77, 392, 872, 1228, 1454, 1486
HpyCH4IV ACGT 2 cut(s) 142, 186
HpyF10VI GCNNNNNNNGC 9 cut(s) 111, 494, 503, 553, 605, 899, 1208, 1283, 1645
HpyF3I CTNAG 5 cut(s) 66, 84, 500, 783, 1106
HpySE526I ACGT 2 cut(s) 142, 186
Hsp92I GRCGYC 2 cut(s) 114, 333
Hsp92II CATG 5 cut(s) 18, 322, 869, 970, 1246
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 8 cut(s) 21, 93, 481, 769, 854, 1357, 1474, 1525
LmnI GCTCC 2 cut(s) 359, 1626
Lsp1109I GCAGC 3 cut(s) 293, 745, 1648
LweI GCATC 5 cut(s) 1189, 1273, 1556, 1587, 1662
MaeI CTAG 3 cut(s) 1415, 1445, 1551
MaeII ACGT 2 cut(s) 142, 186
MaeIII GTNAC 2 cut(s) 931, 944
MalI GATC 8 cut(s) 23, 95, 483, 771, 856, 1359, 1476, 1527
MboI GATC 8 cut(s) 21, 93, 481, 769, 854, 1357, 1474, 1525
MboII GAAGA 3 cut(s) 533, 571, 587
MfeI CAATTG 1 cut(s) 259
MflI RGATCY 1 cut(s) 1525
MhlI GDGCHC 4 cut(s) 508, 719, 1330, 1467
MlyI GAGTC 2 cut(s) 209, 316
MmeI TCCRAC 5 cut(s) 97, 629, 664, 720, 1476
Mph1103I ATGCAT 2 cut(s) 1204, 1571
MroXI GAANNNNTTC 1 cut(s) 1300
MseI TTAA 5 cut(s) 396, 633, 674, 1047, 1437
MslI CAYNNNNRTG 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 1393
MspI CCGG 1 cut(s) 958
MspR9I CCNGG 1 cut(s) 959
MunI CAATTG 1 cut(s) 259
Mva1269I GAATGC 3 cut(s) 448, 823, 915
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 9 cut(s) 111, 494, 503, 553, 605, 899, 1208, 1283, 1645
NciI CCSGG 1 cut(s) 959
NcoI CCATGG 2 cut(s) 14, 1242
NdeI CATATG 1 cut(s) 1041
NdeII GATC 8 cut(s) 21, 93, 481, 769, 854, 1357, 1474, 1525
NlaIII CATG 5 cut(s) 18, 322, 869, 970, 1246
NlaIV GGNNCC 3 cut(s) 106, 346, 1527
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 931
NsiI ATGCAT 2 cut(s) 1204, 1571
OliI CACNNNNGTG 1 cut(s) 75
PagI TCATGA 1 cut(s) 865
PctI GAATGC 3 cut(s) 448, 823, 915
PdmI GAANNNNTTC 1 cut(s) 1300
PfeI GAWTC 3 cut(s) 314, 1018, 1234
PkrI GCNGC 4 cut(s) 308, 413, 760, 1638
PleI GAGTC 2 cut(s) 208, 316
PpsI GAGTC 2 cut(s) 208, 316
Ppu21I YACGTR 1 cut(s) 187
PsiI TTATAA 1 cut(s) 794
Psp124BI GAGCTC 1 cut(s) 1467
PspN4I GGNNCC 3 cut(s) 106, 346, 1527
PspPI GGNCC 7 cut(s) 104, 167, 255, 486, 637, 726, 1097
PstNI CAGNNNCTG 1 cut(s) 91
PsuI RGATCY 1 cut(s) 1525
PvuII CAGCTG 1 cut(s) 1393
RseI CAYNNNNRTG 1 cut(s) 75
SacI GAGCTC 1 cut(s) 1467
SaqAI TTAA 5 cut(s) 396, 633, 674, 1047, 1437
SatI GCNGC 4 cut(s) 307, 412, 759, 1637
Sau3AI GATC 8 cut(s) 21, 93, 481, 769, 854, 1357, 1474, 1525
Sau96I GGNCC 7 cut(s) 104, 167, 255, 486, 637, 726, 1097
SchI GAGTC 2 cut(s) 209, 316
ScrFI CCNGG 1 cut(s) 959
SduI GDGCHC 4 cut(s) 508, 719, 1330, 1467
SfaNI GCATC 5 cut(s) 1189, 1273, 1556, 1587, 1662
SfcI CTRYAG 3 cut(s) 600, 1227, 1453
SinI GGWCC 3 cut(s) 255, 637, 1097
SmiI ATTTAAAT 1 cut(s) 675
SmiMI CAYNNNNRTG 1 cut(s) 75
SmlI CTYRAG 4 cut(s) 299, 753, 1133, 1460
SmoI CTYRAG 4 cut(s) 299, 753, 1133, 1460
SnaBI TACGTA 1 cut(s) 187
SsiI CCGC 4 cut(s) 409, 412, 446, 556
SspMI CTAG 3 cut(s) 1415, 1445, 1551
SstI GAGCTC 1 cut(s) 1467
StyD4I CCNGG 1 cut(s) 957
StyI CCWWGG 5 cut(s) 14, 29, 242, 1242, 1331
SwaI ATTTAAAT 1 cut(s) 675
TaaI ACNGT 7 cut(s) 49, 77, 392, 872, 1228, 1454, 1486
TaiI ACGT 2 cut(s) 145, 189
TaqI TCGA 5 cut(s) 138, 312, 508, 695, 804
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 3 cut(s) 314, 1018, 1234
Tru1I TTAA 5 cut(s) 396, 633, 674, 1047, 1437
Tru9I TTAA 5 cut(s) 396, 633, 674, 1047, 1437
TscAI CASTG 4 cut(s) 54, 184, 724, 1260
TseFI GTSAC 1 cut(s) 931
TseI GCWGC 3 cut(s) 306, 758, 1636
Tsp45I GTSAC 1 cut(s) 931
TspDTI ATGAA 2 cut(s) 942, 982
TspGWI ACGGA 1 cut(s) 829
TspRI CASTG 4 cut(s) 54, 184, 724, 1260
VneI GTGCAC 2 cut(s) 715, 1326
VpaK11BI GGWCC 3 cut(s) 255, 637, 1097
XapI RAATTY 6 cut(s) 363, 709, 838, 1299, 1427, 1557
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 1300
XspI CTAG 3 cut(s) 1415, 1445, 1551
Zsp2I ATGCAT 2 cut(s) 1204, 1571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.