Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000419.1

Orthogroup ID

OG0011289

Physical Location & Seq

Genomic Coordinates Reverse (-)

104864 .. 109209

Gene Structure 4346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000419.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

atgtttgagcagccgaagctggtaatatcggttctctgggatcgtgcggtcttcgcattgagtgctaggtgtgatggtgaagagattgatggggttttagggttgagtggtacgaagaagaagagtttgtcactggaggaggcttcgtattatagggaggccgtcgtggcattgaaattggcaaaggaggtgattcagttgcagcatagctggagggctaatgccattgcgcatttgaatcggaaaggtgggttttcgaggtctctagcgaattcgtgtactgattggccttgtttgttgttggagttgttgtcacaagctgctgaaattgaccattttcagcctaagctggtaatgaacaatatcgaagttctgaagaatgcaattctgttagatgagagttcatcagtcagtggatcgatgtaccatgacagcctaatatggagaataattgctttaggtgcaaatgagaggtgcttgcctcttgtacttgtgacatcggatagttactattcgtaccgagcttacatggattttggatttccagacatattcatctctcgtgagatctttggctggaatccccaagaagccaaactgcatatggttactgattacttcagtcattcagagtggttgataattgccgaggtgcttggcccaaacccaaggcacctattcgagctatatgcactcaagcagggcaattactatcagaagttggtggataacaaagatggcacatttgaggatattgtggattcatatttagcatatttgcaaattactgtagtcaatcctgccatggagagagcattggggtttctgcaaaagtttgctgttgatgcacacaggggaaagatatcaaaagatagactgcgctttggcgcaccttggagacatcctccaccaactgatgaacccacattgtgcactgattgggcaaaggtccagctgatggattttgtgcagtctttcgtcaatacagaatttggaattaattatctagctgattgtagcctggagatcttcgatgatccatctgctgttgcattagtggaggttggtttgctctatgctcaacgggatccatccatcattcgccccatatctagagctattcaacggtgtcttgtaagatggcttgtccaagagagattaaagatgggtttcagggaatcactccagtatttgtggcagcgtattatacgtggccgtagctatcgtcatttaatgctacaagtaggctataagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

418

Amino Acids

47.96

Weight (kDa)

6.39

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31340
fragaria_vesca	FvH4_6g42100
malus_domestica	MD09G1114700.v1.1 MD17G1106200.v1.1
prunus_persica	Prupe.3G210000_v2.0.a1 Prupe.3G210000_v2.0.a1 Prupe.3G210000_v2.0.a1 Prupe.3G210000_v2.0.a1 Prupe.3G210000_v2.0.a1
pyrus_communis	pycom09g03900
rosa_chinensis	RchiOBHm_Chr2g0158021
rosa_laevigata	RLG00000021050
rosa_multiflora	Rmu_sc0000419.1_g000015
rosa_roxburghii	Rroxscaffold_2G00091740
rosa_rugosa	Rorug02G0465200
rosa_samantha	Rh2AG531200 Rh2BG545700 Rh2CG515500 Rh2DG553800
rosa_wichuraiana	Rw2G043930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	672
AccB7I	CCANNNNNTGG	1 cut(s)	958
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	5 cut(s)	48, 424, 1031, 1082, 1095
AcoI	YGGCCR	1 cut(s)	1213
AcsI	RAATTY	2 cut(s)	271, 989
AcuI	CTGAAG	2 cut(s)	395, 604
AdeI	CACNNNGTG	1 cut(s)	930
AfaI	GTAC	5 cut(s)	112, 280, 425, 489, 518
AfiI	CCNNNNNNNGG	1 cut(s)	958
AgsI	TTSAA	3 cut(s)	175, 238, 1124
AjnI	CCWGG	1 cut(s)	1020
Alw21I	GWGCWC	1 cut(s)	935
Alw26I	GTCTC	2 cut(s)	267, 892
Alw44I	GTGCAC	1 cut(s)	931
AlwI	GGATC	5 cut(s)	48, 424, 1031, 1082, 1095
AoxI	GGCC	4 cut(s)	159, 287, 658, 1213
ApaLI	GTGCAC	1 cut(s)	931
ApeKI	GCWGC	4 cut(s)	10, 202, 320, 1198
ApoI	RAATTY	2 cut(s)	271, 989
AseI	ATTAAT	1 cut(s)	999
AspLEI	GCGC	3 cut(s)	232, 882, 890
AspS9I	GGNCC	2 cut(s)	659, 949
AsuHPI	GGTGA	2 cut(s)	89, 202
AvaII	GGWCC	1 cut(s)	949
BaeGI	GKGCMC	1 cut(s)	935
BamHI	GGATCC	1 cut(s)	1087
BanI	GGYRCC	1 cut(s)	672
BauI	CACGAG	1 cut(s)	561
BbsI	GAAGAC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	935
BbvI	GCAGC	4 cut(s)	22, 214, 307, 1210
BccI	CCATC	9 cut(s)	68, 83, 731, 952, 1048, 1099, 1103, 1134, 1159
BceAI	ACGGC	2 cut(s)	146, 1200
BcgI	CGANNNNNNTGC	4 cut(s)	221, 255, 671, 705
BciT130I	CCWGG	1 cut(s)	1022
BcoDI	GTCTC	2 cut(s)	267, 892
BfaI	CTAG	4 cut(s)	66, 266, 1007, 1113
BfmI	CTRYAG	1 cut(s)	789
BglI	GCCNNNNNGGC	1 cut(s)	167
BglII	AGATCT	2 cut(s)	567, 1026
BisI	GCNGC	4 cut(s)	11, 203, 321, 1199
BlsI	GCNGC	4 cut(s)	12, 204, 322, 1200
Bme1390I	CCNGG	1 cut(s)	1022
Bme18I	GGWCC	1 cut(s)	949
BmgT120I	GGNCC	2 cut(s)	659, 949
BmiI	GGNNCC	2 cut(s)	674, 1089
BmrFI	CCNGG	1 cut(s)	1022
BmsI	GCATC	1 cut(s)	835
BpiI	GAAGAC	1 cut(s)	43
BplI	GAGNNNNNCTC	2 cut(s)	889, 921
BpmI	CTGGAG	4 cut(s)	155, 232, 1043, 1169
Bpu10I	CCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	680
Bsa29I	ATCGAT	1 cut(s)	419
BsaAI	YACGTR	1 cut(s)	1211
BsaI	GGTCTC	1 cut(s)	267
BsaJI	CCNNGG	4 cut(s)	648, 668, 804, 893
BsaXI	ACNNNNNCTCC	4 cut(s)	131, 161, 296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	958
Bse1I	ACTGG	2 cut(s)	138, 1186
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	1022
BseCI	ATCGAT	1 cut(s)	419
BseDI	CCNNGG	4 cut(s)	648, 668, 804, 893
BseGI	GGATG	2 cut(s)	901, 1091
BseLI	CCNNNNNNNGG	1 cut(s)	958
BseMI	GCAATG	1 cut(s)	225
BseNI	ACTGG	2 cut(s)	138, 1186
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	935
BseXI	GCAGC	4 cut(s)	22, 214, 307, 1210
BsgI	GTGCAG	1 cut(s)	989
BshFI	GGCC	4 cut(s)	161, 289, 660, 1215
BshNI	GGYRCC	1 cut(s)	672
BshVI	ATCGAT	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	935
BslI	CCNNNNNNNGG	1 cut(s)	958
BsmAI	GTCTC	2 cut(s)	267, 892
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	4 cut(s)	161, 289, 660, 1215
Bso31I	GGTCTC	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	935
Bsp143I	GATC	6 cut(s)	40, 416, 567, 1026, 1036, 1087
Bsp19I	CCATGG	1 cut(s)	804
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	4 cut(s)	161, 289, 660, 1215
BspDI	ATCGAT	1 cut(s)	419
BspLI	GGNNCC	2 cut(s)	674, 1089
BspPI	GGATC	5 cut(s)	48, 424, 1031, 1082, 1095
BspT107I	GGYRCC	1 cut(s)	672
BspTNI	GGTCTC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	138, 1186
BssECI	CCNNGG	4 cut(s)	648, 668, 804, 893
BssMI	GATC	6 cut(s)	40, 416, 567, 1026, 1036, 1087
BssSI	CACGAG	1 cut(s)	561
BssT1I	CCWWGG	3 cut(s)	668, 804, 893
Bst2BI	CACGAG	1 cut(s)	561
Bst2UI	CCWGG	1 cut(s)	1022
Bst4CI	ACNGT	2 cut(s)	790, 1128
Bst6I	CTCTTC	2 cut(s)	75, 116
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstBAI	YACGTR	1 cut(s)	1211
BstC8I	GCNNGC	1 cut(s)	479
BstDEI	CTNAG	1 cut(s)	345
BstDSI	CCRYGG	1 cut(s)	804
BstF5I	GGATG	2 cut(s)	901, 1091
BstHHI	GCGC	3 cut(s)	232, 882, 890
BstKTI	GATC	6 cut(s)	43, 419, 570, 1029, 1039, 1090
BstMAI	GTCTC	2 cut(s)	267, 892
BstMBI	GATC	6 cut(s)	40, 416, 567, 1026, 1036, 1087
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 53, 62, 167, 461, 845
BstNI	CCWGG	1 cut(s)	1022
BstSCI	CCNGG	1 cut(s)	1020
BstSFI	CTRYAG	1 cut(s)	789
BstSLI	GKGCMC	1 cut(s)	935
BstV1I	GCAGC	4 cut(s)	22, 214, 307, 1210
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	3 cut(s)	567, 1026, 1087
BstYI	RGATCY	3 cut(s)	567, 1026, 1087
Bsu15I	ATCGAT	1 cut(s)	419
BsuRI	GGCC	4 cut(s)	161, 289, 660, 1215
BsuTUI	ATCGAT	1 cut(s)	419
BtgI	CCRYGG	1 cut(s)	804
BtsCI	GGATG	2 cut(s)	901, 1091
BtsIMutI	CAGTG	3 cut(s)	131, 418, 933
Cac8I	GCNNGC	1 cut(s)	479
CfoI	GCGC	3 cut(s)	232, 882, 890
Cfr13I	GGNCC	2 cut(s)	659, 949
ClaI	ATCGAT	1 cut(s)	419
Csp6I	GTAC	5 cut(s)	111, 279, 424, 488, 517
CviAII	CATG	3 cut(s)	428, 529, 805
CviQI	GTAC	5 cut(s)	111, 279, 424, 488, 517
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	6 cut(s)	42, 418, 569, 1028, 1038, 1089
DpnII	GATC	6 cut(s)	40, 416, 567, 1026, 1036, 1087
DraIII	CACNNNGTG	1 cut(s)	930
EaeI	YGGCCR	1 cut(s)	1213
Eam1104I	CTCTTC	2 cut(s)	75, 116
EarI	CTCTTC	2 cut(s)	75, 116
Eco130I	CCWWGG	3 cut(s)	668, 804, 893
Eco31I	GGTCTC	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	864
Eco47I	GGWCC	1 cut(s)	949
Eco57I	CTGAAG	2 cut(s)	395, 604
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	1020
EcoRV	GATATC	1 cut(s)	864
EcoT14I	CCWWGG	3 cut(s)	668, 804, 893
ErhI	CCWWGG	3 cut(s)	668, 804, 893
FaeI	CATG	3 cut(s)	431, 532, 808
FatI	CATG	3 cut(s)	427, 528, 804
FauNDI	CATATG	1 cut(s)	603
Fnu4HI	GCNGC	4 cut(s)	11, 203, 321, 1199
FokI	GGATG	2 cut(s)	888, 1078
Fsp4HI	GCNGC	4 cut(s)	11, 203, 321, 1199
FspBI	CTAG	4 cut(s)	66, 266, 1007, 1113
FspI	TGCGCA	1 cut(s)	231
GlaI	GCGC	3 cut(s)	231, 881, 889
GluI	GCNGC	4 cut(s)	11, 203, 321, 1199
GsuI	CTGGAG	4 cut(s)	155, 232, 1043, 1169
HaeIII	GGCC	4 cut(s)	161, 289, 660, 1215
HhaI	GCGC	3 cut(s)	232, 882, 890
Hin1II	CATG	3 cut(s)	431, 532, 808
Hin6I	GCGC	3 cut(s)	230, 880, 888
HinP1I	GCGC	3 cut(s)	230, 880, 888
HinfI	GANTC	5 cut(s)	193, 238, 580, 761, 1178
HphI	GGTGA	2 cut(s)	89, 202
Hpy166II	GTNNAC	2 cut(s)	279, 933
Hpy188I	TCNGA	5 cut(s)	243, 375, 502, 631, 717
Hpy188III	TCNNGA	3 cut(s)	545, 563, 1113
Hpy8I	GTNNAC	2 cut(s)	279, 933
Hpy99I	CGWCG	1 cut(s)	167
HpyCH4III	ACNGT	2 cut(s)	790, 1128
HpyCH4IV	ACGT	1 cut(s)	1210
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 53, 62, 167, 461, 845
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	1 cut(s)	1210
Hsp92II	CATG	3 cut(s)	431, 532, 808
HspAI	GCGC	3 cut(s)	230, 880, 888
Kzo9I	GATC	6 cut(s)	40, 416, 567, 1026, 1036, 1087
Lsp1109I	GCAGC	4 cut(s)	22, 214, 307, 1210
LweI	GCATC	1 cut(s)	835
MaeI	CTAG	4 cut(s)	66, 266, 1007, 1113
MaeII	ACGT	1 cut(s)	1210
MaeIII	GTNAC	5 cut(s)	129, 312, 493, 506, 607
MalI	GATC	6 cut(s)	42, 418, 569, 1028, 1038, 1089
MboI	GATC	6 cut(s)	40, 416, 567, 1026, 1036, 1087
MboII	GAAGA	7 cut(s)	43, 92, 127, 130, 133, 388, 1021
MflI	RGATCY	3 cut(s)	567, 1026, 1087
MhlI	GDGCHC	1 cut(s)	935
MmeI	TCCRAC	1 cut(s)	282
MseI	TTAA	3 cut(s)	999, 1160, 1232
MspA1I	CMGCKG	1 cut(s)	955
MspR9I	CCNGG	1 cut(s)	1022
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	1022
MwoI	GCNNNNNNNGC	6 cut(s)	16, 53, 62, 167, 461, 845
NcoI	CCATGG	1 cut(s)	804
NdeI	CATATG	1 cut(s)	603
NdeII	GATC	6 cut(s)	40, 416, 567, 1026, 1036, 1087
NlaIII	CATG	3 cut(s)	431, 532, 808
NlaIV	GGNNCC	2 cut(s)	674, 1089
NmeAIII	GCCGAG	1 cut(s)	673
NmuCI	GTSAC	3 cut(s)	129, 312, 493
NsbI	TGCGCA	1 cut(s)	231
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	5 cut(s)	193, 238, 580, 761, 1178
PflMI	CCANNNNNTGG	1 cut(s)	958
PkrI	GCNGC	4 cut(s)	12, 204, 322, 1200
Ppu21I	YACGTR	1 cut(s)	1211
PshBI	ATTAAT	1 cut(s)	999
Psp6I	CCWGG	1 cut(s)	1020
PspGI	CCWGG	1 cut(s)	1020
PspN4I	GGNNCC	2 cut(s)	674, 1089
PspPI	GGNCC	2 cut(s)	659, 949
PsrI	GAACNNNNNNTAC	2 cut(s)	15, 47
PsuI	RGATCY	3 cut(s)	567, 1026, 1087
PvuII	CAGCTG	1 cut(s)	955
RsaI	GTAC	5 cut(s)	112, 280, 425, 489, 518
RsaNI	GTAC	5 cut(s)	111, 279, 424, 488, 517
SaqAI	TTAA	3 cut(s)	999, 1160, 1232
SatI	GCNGC	4 cut(s)	11, 203, 321, 1199
Sau3AI	GATC	6 cut(s)	40, 416, 567, 1026, 1036, 1087
Sau96I	GGNCC	2 cut(s)	659, 949
ScrFI	CCNGG	1 cut(s)	1022
SduI	GDGCHC	1 cut(s)	935
SfaNI	GCATC	1 cut(s)	835
SfcI	CTRYAG	1 cut(s)	789
SinI	GGWCC	1 cut(s)	949
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	4 cut(s)	66, 266, 1007, 1113
StyD4I	CCNGG	1 cut(s)	1020
StyI	CCWWGG	3 cut(s)	668, 804, 893
TaaI	ACNGT	2 cut(s)	790, 1128
TaiI	ACGT	1 cut(s)	1213
TaqI	TCGA	5 cut(s)	257, 366, 419, 681, 1032
TatI	WGTACW	2 cut(s)	278, 487
TfiI	GAWTC	5 cut(s)	193, 238, 580, 761, 1178
Tru1I	TTAA	3 cut(s)	999, 1160, 1232
Tru9I	TTAA	3 cut(s)	999, 1160, 1232
TscAI	CASTG	3 cut(s)	138, 418, 940
TseFI	GTSAC	3 cut(s)	129, 312, 493
TseI	GCWGC	4 cut(s)	10, 202, 320, 1198
Tsp45I	GTSAC	3 cut(s)	129, 312, 493
TspDTI	ATGAA	5 cut(s)	371, 393, 544, 753, 933
TspRI	CASTG	3 cut(s)	138, 418, 940
Van91I	CCANNNNNTGG	1 cut(s)	958
VneI	GTGCAC	1 cut(s)	931
VpaK11BI	GGWCC	1 cut(s)	949
VspI	ATTAAT	1 cut(s)	999
XapI	RAATTY	2 cut(s)	271, 989
XbaI	TCTAGA	1 cut(s)	1112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	601
XspI	CTAG	4 cut(s)	66, 266, 1007, 1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.