AT2G33370

60S ribosomal protein L23

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0020844
Physical Location & Seq
Reverse (-)
14143128 .. 14144766
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33370.1

Sequence Viewer

Length: 423 bp
ATGTCGAAGCGAGGACGTGGAGGAACGTCTGGTAACAAATTCAGGATGTCACTTGGTCTGCCCGTTGCAGCCACAGTGAACTGTGCAGACAACACTGGTGCTAAGAACCTTTACATCATCTCTGTTAAAGGAATCAAAGGTCGTCTCAATCGGTTACCTTCTGCTTGTGTTGGTGACATGGTTATGGCCACTGTCAAGAAAGGTAAACCAGACCTCAGGAAAAAGGTTCTTCCTGCTGTGATTGTTAGGCAACGTAAGCCATGGCGCCGAAAGGACGGTGTTTTCATGTACTTTGAAGATAATGCTGGAGTGATTGTGAACCCTAAGGGAGAAATGAAAGGTTCTGCAATTACTGGACCTATTGGGAAAGAGTGTGCGGATCTCTGGCCAAGGATTGCTAGTGCTGCTAACGCCATTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

140

Amino Acids

15.03

Weight (kDa)

10.48

Isoelectric Point (pI)

29.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L14 PF00238 21 - 140 1.2e-41 Ribosomal protein L14p/L23e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020844)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04480 AT2G33370 AT3G04400
pyrus_communis pycom13g19490
rosa_wichuraiana Rw7G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 264
AciI CCGC 1 cut(s) 377
AclWI GGATC 1 cut(s) 387
AcoI YGGCCR 2 cut(s) 186, 386
AcsI RAATTY 1 cut(s) 38
AcyI GRCGYC 1 cut(s) 265
AfaI GTAC 1 cut(s) 290
AgsI TTSAA 1 cut(s) 296
AjiI CACGTC 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 387
AoxI GGCC 2 cut(s) 186, 386
ApeKI GCWGC 2 cut(s) 68, 404
ApoI RAATTY 1 cut(s) 38
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 356
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 356
AxyI CCTNAGG 2 cut(s) 215, 324
BalI TGGCCA 2 cut(s) 188, 388
BanI GGYRCC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 80, 391
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 399
BfoI RGCGCY 1 cut(s) 268
BisI GCNGC 2 cut(s) 69, 405
BlsI GCNGC 2 cut(s) 70, 406
Bme18I GGWCC 1 cut(s) 356
BmgBI CACGTC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 356
BmiI GGNNCC 1 cut(s) 266
BpmI CTGGAG 1 cut(s) 327
BsaHI GRCGYC 1 cut(s) 265
BsaJI CCNNGG 2 cut(s) 260, 389
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bse1I ACTGG 2 cut(s) 100, 358
Bse21I CCTNAGG 2 cut(s) 215, 324
BseDI CCNNGG 2 cut(s) 260, 389
BseGI GGATG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 229
BseNI ACTGG 2 cut(s) 100, 358
BseXI GCAGC 2 cut(s) 80, 391
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 2 cut(s) 188, 388
BshNI GGYRCC 1 cut(s) 264
BsmAI GTCTC 1 cut(s) 149
BsmBI CGTCTC 1 cut(s) 149
BsnI GGCC 2 cut(s) 188, 388
Bsp143I GATC 1 cut(s) 379
Bsp19I CCATGG 1 cut(s) 260
BspACI CCGC 1 cut(s) 377
BspANI GGCC 2 cut(s) 188, 388
BspCNI CTCAG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 266
BspPI GGATC 1 cut(s) 387
BspT107I GGYRCC 1 cut(s) 264
BsrI ACTGG 2 cut(s) 100, 358
BssECI CCNNGG 2 cut(s) 260, 389
BssMI GATC 1 cut(s) 379
BssNI GRCGYC 1 cut(s) 265
BssT1I CCWWGG 2 cut(s) 260, 389
Bst4CI ACNGT 4 cut(s) 76, 83, 193, 278
BstACI GRCGYC 1 cut(s) 265
BstDEI CTNAG 3 cut(s) 102, 215, 324
BstDSI CCRYGG 1 cut(s) 260
BstEII GGTNACC 1 cut(s) 153
BstF5I GGATG 1 cut(s) 51
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 1 cut(s) 382
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 379
BstMWI GCNNNNNNNGC 3 cut(s) 256, 404, 410
BstPI GGTNACC 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 80, 391
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
Bsu36I CCTNAGG 2 cut(s) 215, 324
BsuRI GGCC 2 cut(s) 188, 388
BtgI CCRYGG 1 cut(s) 260
BtrI CACGTC 1 cut(s) 17
BtsCI GGATG 1 cut(s) 51
BtsIMutI CAGTG 3 cut(s) 81, 93, 189
CfoI GCGC 1 cut(s) 267
Cfr13I GGNCC 1 cut(s) 356
Csp6I GTAC 1 cut(s) 289
CviAII CATG 3 cut(s) 178, 261, 286
CviJI RGCY 4 cut(s) 71, 188, 259, 388
CviKI_1 RGCY 4 cut(s) 71, 188, 259, 388
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 3 cut(s) 102, 215, 324
DinI GGCGCC 1 cut(s) 266
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
EaeI YGGCCR 2 cut(s) 186, 386
Eco130I CCWWGG 2 cut(s) 260, 389
Eco47I GGWCC 1 cut(s) 356
Eco81I CCTNAGG 2 cut(s) 215, 324
Eco91I GGTNACC 1 cut(s) 153
EcoO65I GGTNACC 1 cut(s) 153
EcoT14I CCWWGG 2 cut(s) 260, 389
EgeI GGCGCC 1 cut(s) 266
EheI GGCGCC 1 cut(s) 266
ErhI CCWWGG 2 cut(s) 260, 389
Esp3I CGTCTC 1 cut(s) 149
FaeI CATG 3 cut(s) 181, 264, 289
FaiI YATR 4 cut(s) 179, 185, 262, 287
FatI CATG 3 cut(s) 177, 260, 285
Fnu4HI GCNGC 2 cut(s) 69, 405
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 2 cut(s) 69, 405
FspBI CTAG 1 cut(s) 399
GlaI GCGC 1 cut(s) 266
GluI GCNGC 2 cut(s) 69, 405
GsuI CTGGAG 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 268
HaeIII GGCC 2 cut(s) 188, 388
HhaI GCGC 1 cut(s) 267
Hin1I GRCGYC 1 cut(s) 265
Hin1II CATG 3 cut(s) 181, 264, 289
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HinfI GANTC 1 cut(s) 132
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 3 cut(s) 79, 206, 319
Hpy188I TCNGA 1 cut(s) 422
Hpy188III TCNNGA 3 cut(s) 43, 196, 217
Hpy8I GTNNAC 3 cut(s) 79, 206, 319
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 4 cut(s) 76, 83, 193, 278
HpyCH4IV ACGT 3 cut(s) 16, 26, 253
HpyCH4V TGCA 3 cut(s) 68, 86, 347
HpyF10VI GCNNNNNNNGC 3 cut(s) 256, 404, 410
HpyF3I CTNAG 3 cut(s) 102, 215, 324
HpySE526I ACGT 3 cut(s) 16, 26, 253
Hsp92I GRCGYC 1 cut(s) 265
Hsp92II CATG 3 cut(s) 181, 264, 289
HspAI GCGC 1 cut(s) 265
KasI GGCGCC 1 cut(s) 264
Kzo9I GATC 1 cut(s) 379
LpnPI CCDG 9 cut(s) 15, 28, 81, 202, 222, 246, 291, 339, 370
Lsp1109I GCAGC 2 cut(s) 80, 391
MaeI CTAG 1 cut(s) 399
MaeII ACGT 3 cut(s) 16, 26, 253
MaeIII GTNAC 4 cut(s) 32, 48, 153, 173
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MboII GAAGA 2 cut(s) 221, 308
MflI RGATCY 1 cut(s) 379
MlsI TGGCCA 2 cut(s) 188, 388
MluCI AATT 2 cut(s) 38, 348
MluNI TGGCCA 2 cut(s) 188, 388
Mly113I GGCGCC 1 cut(s) 265
MnlI CCTC 3 cut(s) 5, 14, 224
Mox20I TGGCCA 2 cut(s) 188, 388
MscI TGGCCA 2 cut(s) 188, 388
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 182
Msp20I TGGCCA 2 cut(s) 188, 388
MwoI GCNNNNNNNGC 3 cut(s) 256, 404, 410
NarI GGCGCC 1 cut(s) 265
NcoI CCATGG 1 cut(s) 260
NdeII GATC 1 cut(s) 379
NlaIII CATG 3 cut(s) 181, 264, 289
NlaIV GGNNCC 1 cut(s) 266
NmuCI GTSAC 2 cut(s) 48, 173
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 2 cut(s) 70, 406
PluTI GGCGCC 1 cut(s) 268
PspEI GGTNACC 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 1 cut(s) 356
PsuI RGATCY 1 cut(s) 379
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 69, 405
Sau3AI GATC 1 cut(s) 379
Sau96I GGNCC 1 cut(s) 356
SfoI GGCGCC 1 cut(s) 266
SinI GGWCC 1 cut(s) 356
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 2 cut(s) 38, 348
SsiI CCGC 1 cut(s) 377
SspDI GGCGCC 1 cut(s) 264
SspMI CTAG 1 cut(s) 399
StyI CCWWGG 2 cut(s) 260, 389
TaaI ACNGT 4 cut(s) 76, 83, 193, 278
TaiI ACGT 3 cut(s) 19, 29, 256
TaqI TCGA 1 cut(s) 5
TasI AATT 2 cut(s) 38, 348
TatI WGTACW 1 cut(s) 288
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 3 cut(s) 81, 100, 196
TseFI GTSAC 2 cut(s) 48, 173
TseI GCWGC 2 cut(s) 68, 404
Tsp45I GTSAC 2 cut(s) 48, 173
TspDTI ATGAA 2 cut(s) 274, 350
TspRI CASTG 3 cut(s) 81, 100, 196
VpaK11BI GGWCC 1 cut(s) 356
XapI RAATTY 1 cut(s) 38
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.