pycom13g19490

Ubiquitin-binding WIYLD domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0020844
Physical Location & Seq
Reverse (-)
15470025 .. 15472454
2430 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g19490.3

Sequence Viewer

Length: 612 bp
ATGTCCTCTGCAGAACAGGGAGGAGGAGGAGAAATAAGACCTTCCCAAAAGCCCATTTCTAAGAGAGGCCACGACAATGTTCAAGAGGCCCACGTGTTACCCGGCAGACAACCCTACGCCGCTCTCTCTCTATATATACATCTCCTAAACCCTAATCGCTCTCTCAGTCCCGTTTCCGCAGCAGCCAAGATGTCGAAGCGAGGGCGTGGAGGGTCCGCTGGAAACAAGTTTAGGATGTCACTGGGTCTTCCAGTGGCAGCCACTGTGAACTGTGCTGATAACACCGGAGCTAAGAATCTTTACATCATTTCCGTGAAGGGGATCAAGGGTCGTTTGAACAGGTTGCCATCTGCTTGCGTTGGTGACATGGTCATGGCCACTGTCAAGAAGGGAAAGCCTGACCTCAGGAAGAAGGTCCTGCCTGCTGTCATCGTGAGGCAGCGCAAGCCATGGCGCCGAAAGGATGGTGTTTTCATGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCGAAGGGAGAAATGAAAGGGTCTGCTATTACTGGTCCGATCGGAAAGGAGTGTGCTGATCTCTGGCCTAGGATTGCAAGTGCTGCTAATGCCATCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Pre-SET Ribosomal_L14 SET WIYLD

Protein Analysis

204

Amino Acids

21.67

Weight (kDa)

10.4

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020844)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04480 AT2G33370 AT3G04400
pyrus_communis pycom13g19490
rosa_wichuraiana Rw7G016970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 453
AccBSI CCGCTC 1 cut(s) 122
AciI CCGC 3 cut(s) 120, 177, 216
AclWI GGATC 1 cut(s) 329
AcoI YGGCCR 1 cut(s) 375
AcvI CACGTG 1 cut(s) 94
AcyI GRCGYC 1 cut(s) 454
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 1 cut(s) 318
AflIII ACRYGT 1 cut(s) 93
AgsI TTSAA 3 cut(s) 83, 337, 485
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
AlwI GGATC 1 cut(s) 329
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 4 cut(s) 67, 87, 375, 575
ApeKI GCWGC 5 cut(s) 179, 182, 257, 439, 593
AspA2I CCTAGG 1 cut(s) 578
AspLEI GCGC 2 cut(s) 444, 456
AspS9I GGNCC 4 cut(s) 88, 213, 415, 545
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 374
AvaII GGWCC 3 cut(s) 213, 415, 545
AvrII CCTAGG 1 cut(s) 578
AxyI CCTNAGG 1 cut(s) 404
BalI TGGCCA 1 cut(s) 377
BanI GGYRCC 1 cut(s) 453
BbrPI CACGTG 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 239
BbvI GCAGC 5 cut(s) 191, 194, 269, 451, 580
BccI CCATC 3 cut(s) 355, 458, 611
BcnI CCSGG 1 cut(s) 102
BfaI CTAG 1 cut(s) 579
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 457
BisI GCNGC 6 cut(s) 120, 180, 183, 258, 440, 594
BlnI CCTAGG 1 cut(s) 578
BlsI GCNGC 6 cut(s) 121, 181, 184, 259, 441, 595
Bme1390I CCNGG 1 cut(s) 102
Bme18I GGWCC 3 cut(s) 213, 415, 545
BmgT120I GGNCC 4 cut(s) 88, 213, 415, 545
BmiI GGNNCC 2 cut(s) 214, 455
BmrFI CCNGG 1 cut(s) 102
BmrI ACTGGG 1 cut(s) 251
BmuI ACTGGG 1 cut(s) 251
BpiI GAAGAC 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 102
BsaAI YACGTR 1 cut(s) 94
BsaHI GRCGYC 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 449, 578
BsaWI WCCGGW 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse1I ACTGG 3 cut(s) 246, 251, 547
Bse21I CCTNAGG 1 cut(s) 404
BseDI CCNNGG 2 cut(s) 449, 578
BseGI GGATG 2 cut(s) 240, 469
BseLI CCNNNNNNNGG 1 cut(s) 318
BseMII CTCAG 2 cut(s) 178, 418
BseNI ACTGG 3 cut(s) 246, 251, 547
BseRI GAGGAG 3 cut(s) 36, 39, 42
BseXI GCAGC 5 cut(s) 191, 194, 269, 451, 580
Bsh1285I CGRYCG 1 cut(s) 552
BshFI GGCC 4 cut(s) 69, 89, 377, 577
BshNI GGYRCC 1 cut(s) 453
BsiEI CGRYCG 1 cut(s) 552
BsiSI CCGG 2 cut(s) 102, 285
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 4 cut(s) 69, 89, 377, 577
Bsp143I GATC 3 cut(s) 321, 549, 568
Bsp19I CCATGG 1 cut(s) 449
BspACI CCGC 3 cut(s) 120, 177, 216
BspANI GGCC 4 cut(s) 69, 89, 377, 577
BspCNI CTCAG 2 cut(s) 177, 417
BspLI GGNNCC 2 cut(s) 214, 455
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 1 cut(s) 329
BspT107I GGYRCC 1 cut(s) 453
BsrBI CCGCTC 1 cut(s) 122
BsrI ACTGG 3 cut(s) 246, 251, 547
BssECI CCNNGG 2 cut(s) 449, 578
BssMI GATC 3 cut(s) 321, 549, 568
BssNI GRCGYC 1 cut(s) 454
BssT1I CCWWGG 2 cut(s) 449, 578
Bst4CI ACNGT 3 cut(s) 265, 272, 382
BstACI GRCGYC 1 cut(s) 454
BstAPI GCANNNNNTGC 1 cut(s) 593
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 3 cut(s) 355, 423, 446
BstDEI CTNAG 4 cut(s) 60, 164, 291, 404
BstDSI CCRYGG 1 cut(s) 449
BstF5I GGATG 2 cut(s) 240, 469
BstH2I RGCGCY 1 cut(s) 457
BstHHI GCGC 2 cut(s) 444, 456
BstKTI GATC 3 cut(s) 324, 552, 571
BstMBI GATC 3 cut(s) 321, 549, 568
BstMCI CGRYCG 1 cut(s) 552
BstMWI GCNNNNNNNGC 3 cut(s) 445, 593, 599
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 5 cut(s) 191, 194, 269, 451, 580
BstV2I GAAGAC 1 cut(s) 239
Bsu36I CCTNAGG 1 cut(s) 404
BsuRI GGCC 4 cut(s) 69, 89, 377, 577
BtgI CCRYGG 1 cut(s) 449
BtsCI GGATG 2 cut(s) 240, 469
BtsIMutI CAGTG 4 cut(s) 239, 258, 261, 378
Cac8I GCNNGC 3 cut(s) 355, 423, 446
CaiI CAGNNNCTG 1 cut(s) 263
CfoI GCGC 2 cut(s) 444, 456
Cfr13I GGNCC 4 cut(s) 88, 213, 415, 545
Csp6I GTAC 1 cut(s) 478
CviAII CATG 4 cut(s) 367, 373, 450, 475
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 4 cut(s) 60, 164, 291, 404
DinI GGCGCC 1 cut(s) 455
DpnI GATC 3 cut(s) 323, 551, 570
DpnII GATC 3 cut(s) 321, 549, 568
EaeI YGGCCR 1 cut(s) 375
Eco130I CCWWGG 2 cut(s) 449, 578
Eco47I GGWCC 3 cut(s) 213, 415, 545
Eco72I CACGTG 1 cut(s) 94
Eco81I CCTNAGG 1 cut(s) 404
EcoO109I RGGNCCY 1 cut(s) 415
EcoT14I CCWWGG 2 cut(s) 449, 578
EgeI GGCGCC 1 cut(s) 455
EheI GGCGCC 1 cut(s) 455
ErhI CCWWGG 2 cut(s) 449, 578
FaeI CATG 4 cut(s) 370, 376, 453, 478
FaiI YATR 7 cut(s) 133, 135, 137, 368, 374, 451, 476
FaqI GGGAC 1 cut(s) 153
FatI CATG 4 cut(s) 366, 372, 449, 474
Fnu4HI GCNGC 6 cut(s) 120, 180, 183, 258, 440, 594
FokI GGATG 2 cut(s) 247, 476
Fsp4HI GCNGC 6 cut(s) 120, 180, 183, 258, 440, 594
FspBI CTAG 1 cut(s) 579
GlaI GCGC 2 cut(s) 443, 455
GluI GCNGC 6 cut(s) 120, 180, 183, 258, 440, 594
HaeII RGCGCY 1 cut(s) 457
HaeIII GGCC 4 cut(s) 69, 89, 377, 577
HapII CCGG 2 cut(s) 102, 285
HhaI GCGC 2 cut(s) 444, 456
Hin1I GRCGYC 1 cut(s) 454
Hin1II CATG 4 cut(s) 370, 376, 453, 478
Hin6I GCGC 2 cut(s) 442, 454
HinP1I GCGC 2 cut(s) 442, 454
HinfI GANTC 2 cut(s) 295, 508
HpaII CCGG 2 cut(s) 102, 285
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 4 cut(s) 513, 549, 554, 611
Hpy188III TCNNGA 4 cut(s) 83, 385, 406, 433
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 5 cut(s) 51, 310, 382, 406, 508
HpyCH4III ACNGT 3 cut(s) 265, 272, 382
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 11, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 445, 593, 599
HpyF3I CTNAG 4 cut(s) 60, 164, 291, 404
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 454
Hsp92II CATG 4 cut(s) 370, 376, 453, 478
HspAI GCGC 2 cut(s) 442, 454
KasI GGCGCC 1 cut(s) 453
Kzo9I GATC 3 cut(s) 321, 549, 568
LmnI GCTCC 1 cut(s) 287
Lsp1109I GCAGC 5 cut(s) 191, 194, 269, 451, 580
MaeI CTAG 1 cut(s) 579
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 3 cut(s) 96, 237, 362
MalI GATC 3 cut(s) 323, 551, 570
MbiI CCGCTC 1 cut(s) 122
MboI GATC 3 cut(s) 321, 549, 568
MboII GAAGA 3 cut(s) 239, 421, 497
MlsI TGGCCA 1 cut(s) 377
MluNI TGGCCA 1 cut(s) 377
Mly113I GGCGCC 1 cut(s) 454
Mox20I TGGCCA 1 cut(s) 377
MscI TGGCCA 1 cut(s) 377
MslI CAYNNNNRTG 3 cut(s) 75, 311, 371
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 2 cut(s) 102, 285
MspR9I CCNGG 1 cut(s) 102
MwoI GCNNNNNNNGC 3 cut(s) 445, 593, 599
NarI GGCGCC 1 cut(s) 454
NciI CCSGG 1 cut(s) 102
NcoI CCATGG 1 cut(s) 449
NdeII GATC 3 cut(s) 321, 549, 568
NlaIII CATG 4 cut(s) 370, 376, 453, 478
NlaIV GGNNCC 2 cut(s) 214, 455
NmuCI GTSAC 2 cut(s) 237, 362
PfeI GAWTC 2 cut(s) 295, 508
PflFI GACNNNGTC 1 cut(s) 368
PkrI GCNGC 6 cut(s) 121, 181, 184, 259, 441, 595
Ple19I CGATCG 1 cut(s) 552
PluTI GGCGCC 1 cut(s) 457
PmaCI CACGTG 1 cut(s) 94
PmlI CACGTG 1 cut(s) 94
Ppu21I YACGTR 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 415
Psp5II RGGWCCY 1 cut(s) 415
PspCI CACGTG 1 cut(s) 94
PspN4I GGNNCC 2 cut(s) 214, 455
PspPI GGNCC 4 cut(s) 88, 213, 415, 545
PspPPI RGGWCCY 1 cut(s) 415
PstI CTGCAG 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 263
PsyI GACNNNGTC 1 cut(s) 368
PvuI CGATCG 1 cut(s) 552
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
RseI CAYNNNNRTG 3 cut(s) 75, 311, 371
SatI GCNGC 6 cut(s) 120, 180, 183, 258, 440, 594
Sau3AI GATC 3 cut(s) 321, 549, 568
Sau96I GGNCC 4 cut(s) 88, 213, 415, 545
ScrFI CCNGG 1 cut(s) 102
SetI ASST 6 cut(s) 43, 96, 292, 344, 405, 417
SfcI CTRYAG 1 cut(s) 9
SfoI GGCGCC 1 cut(s) 455
SinI GGWCC 3 cut(s) 213, 415, 545
SmiMI CAYNNNNRTG 3 cut(s) 75, 311, 371
SsiI CCGC 3 cut(s) 120, 177, 216
SspDI GGCGCC 1 cut(s) 453
SspMI CTAG 1 cut(s) 579
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 2 cut(s) 449, 578
TaaI ACNGT 3 cut(s) 265, 272, 382
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 194
TatI WGTACW 1 cut(s) 477
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 2 cut(s) 295, 508
TscAI CASTG 4 cut(s) 246, 258, 268, 385
TseFI GTSAC 2 cut(s) 237, 362
TseI GCWGC 5 cut(s) 179, 182, 257, 439, 593
Tsp45I GTSAC 2 cut(s) 237, 362
TspDTI ATGAA 2 cut(s) 463, 539
TspGWI ACGGA 1 cut(s) 301
TspRI CASTG 4 cut(s) 246, 258, 268, 385
Tth111I GACNNNGTC 1 cut(s) 368
VpaK11BI GGWCC 3 cut(s) 213, 415, 545
XmaJI CCTAGG 1 cut(s) 578
XspI CTAG 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.