Peptidase, trypsin-like serine and cysteine proteases
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G35155 AT2G35155 AT5G45030 AT5G45030 |
| fragaria_vesca | FvH4_3g12240 FvH4_3g12240 FvH4_3g12240 FvH4_3g12240 FvH4_3g12240 FvH4_3g12240 |
| malus_domestica | MD05G1252600.v1.1 MD10G1233600.v1.1 |
| prunus_persica | Prupe.4G111500_v2.0.a1 Prupe.4G111500_v2.0.a1 Prupe.4G111500_v2.0.a1 Prupe.4G111500_v2.0.a1 |
| pyrus_communis | pycom10g19590 |
| rosa_chinensis | RchiOBHm_Chr5g0020051 |
| rosa_laevigata | RLG00000032494 RLG00000032496 |
| rosa_multiflora | Rmu_sc0002250.1_g000001 Rmu_sc0009586.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00058150 |
| rosa_rugosa | Rorug05G0056400 Rorug05G0056500 |
| rosa_samantha | Rh5AG146600 Rh5BG146100 Rh5CG157600 Rh5DG145500 |
| rosa_wichuraiana | Rw5G012940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 591 |
| Acc36I | ACCTGC | 1 cut(s) | 276 |
| AccB1I | GGYRCC | 1 cut(s) | 911 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 797 |
| AccBSI | CCGCTC | 1 cut(s) | 905 |
| AccI | GTMKAC | 2 cut(s) | 810, 1607 |
| AciI | CCGC | 7 cut(s) | 364, 383, 905, 1320, 1463, 1520, 1614 |
| AclI | AACGTT | 1 cut(s) | 893 |
| AclWI | GGATC | 5 cut(s) | 404, 617, 1130, 1253, 1353 |
| AcsI | RAATTY | 2 cut(s) | 4, 542 |
| AcuI | CTGAAG | 2 cut(s) | 122, 352 |
| AfaI | GTAC | 1 cut(s) | 379 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 262, 632, 797, 802, 1311, 1623 |
| AgsI | TTSAA | 7 cut(s) | 123, 227, 940, 1181, 1388, 1443, 1562 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 806 |
| AjnI | CCWGG | 3 cut(s) | 191, 508, 711 |
| AluBI | AGCT | 8 cut(s) | 14, 44, 236, 325, 683, 1062, 1357, 1503 |
| AluI | AGCT | 8 cut(s) | 14, 44, 236, 325, 683, 1062, 1357, 1503 |
| Alw21I | GWGCWC | 3 cut(s) | 327, 562, 996 |
| Alw26I | GTCTC | 1 cut(s) | 1479 |
| Alw44I | GTGCAC | 1 cut(s) | 992 |
| AlwI | GGATC | 5 cut(s) | 404, 617, 1130, 1253, 1353 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 278 |
| Ama87I | CYCGRG | 1 cut(s) | 1304 |
| AoxI | GGCC | 1 cut(s) | 194 |
| ApaLI | GTGCAC | 1 cut(s) | 992 |
| ApeKI | GCWGC | 7 cut(s) | 38, 41, 566, 1391, 1394, 1397, 1400 |
| ApoI | RAATTY | 2 cut(s) | 4, 542 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1420 |
| AspLEI | GCGC | 1 cut(s) | 363 |
| AspS9I | GGNCC | 3 cut(s) | 506, 800, 1214 |
| AsuC2I | CCSGG | 2 cut(s) | 804, 1472 |
| AsuHPI | GGTGA | 4 cut(s) | 989, 1166, 1196, 1718 |
| AvaI | CYCGRG | 1 cut(s) | 1304 |
| AvaII | GGWCC | 3 cut(s) | 506, 800, 1214 |
| BaeGI | GKGCMC | 1 cut(s) | 996 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 369, 402 |
| BanI | GGYRCC | 1 cut(s) | 911 |
| BanII | GRGCYC | 2 cut(s) | 327, 1713 |
| BauI | CACGAG | 2 cut(s) | 943, 1404 |
| BbsI | GAAGAC | 3 cut(s) | 101, 234, 1282 |
| Bbv12I | GWGCWC | 3 cut(s) | 327, 562, 996 |
| BbvI | GCAGC | 7 cut(s) | 50, 53, 553, 1403, 1406, 1409, 1412 |
| BccI | CCATC | 7 cut(s) | 121, 136, 301, 341, 599, 902, 1486 |
| BceAI | ACGGC | 1 cut(s) | 387 |
| BciT130I | CCWGG | 3 cut(s) | 193, 510, 713 |
| BclI | TGATCA | 1 cut(s) | 853 |
| BcnI | CCSGG | 2 cut(s) | 804, 1472 |
| BcoDI | GTCTC | 1 cut(s) | 1479 |
| BfaI | CTAG | 2 cut(s) | 447, 1703 |
| BfmI | CTRYAG | 1 cut(s) | 684 |
| BfuAI | ACCTGC | 1 cut(s) | 276 |
| BisI | GCNGC | 8 cut(s) | 39, 42, 364, 567, 1392, 1395, 1398, 1401 |
| BlpI | GCTNAGC | 1 cut(s) | 203 |
| BlsI | GCNGC | 8 cut(s) | 40, 43, 365, 568, 1393, 1396, 1399, 1402 |
| Bme1390I | CCNGG | 5 cut(s) | 193, 510, 713, 804, 1472 |
| Bme18I | GGWCC | 3 cut(s) | 506, 800, 1214 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 806 |
| BmeT110I | CYCGRG | 1 cut(s) | 1304 |
| BmgT120I | GGNCC | 3 cut(s) | 506, 800, 1214 |
| BmiI | GGNNCC | 6 cut(s) | 507, 673, 913, 1081, 1215, 1476 |
| BmrFI | CCNGG | 5 cut(s) | 193, 510, 713, 804, 1472 |
| BmsI | GCATC | 1 cut(s) | 1708 |
| BpiI | GAAGAC | 3 cut(s) | 101, 234, 1282 |
| BpmI | CTGGAG | 2 cut(s) | 239, 531 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 203 |
| BpuEI | CTTGAG | 3 cut(s) | 124, 341, 521 |
| BpuMI | CCSGG | 2 cut(s) | 804, 1472 |
| BsaJI | CCNNGG | 6 cut(s) | 373, 403, 675, 796, 814, 1270 |
| BsaWI | WCCGGW | 1 cut(s) | 1076 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 672, 702 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 262, 632, 797, 802, 1311, 1623 |
| Bse118I | RCCGGY | 1 cut(s) | 1292 |
| Bse1I | ACTGG | 3 cut(s) | 1238, 1316, 1453 |
| Bse3DI | GCAATG | 4 cut(s) | 181, 470, 955, 1581 |
| BseBI | CCWGG | 3 cut(s) | 193, 510, 713 |
| BseDI | CCNNGG | 6 cut(s) | 373, 403, 675, 796, 814, 1270 |
| BseGI | GGATG | 6 cut(s) | 30, 156, 778, 913, 1370, 1457 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 262, 632, 797, 802, 1311, 1623 |
| BseMI | GCAATG | 4 cut(s) | 181, 470, 955, 1581 |
| BseMII | CTCAG | 4 cut(s) | 159, 217, 659, 1515 |
| BseNI | ACTGG | 3 cut(s) | 1238, 1316, 1453 |
| BseRI | GAGGAG | 1 cut(s) | 123 |
| BseSI | GKGCMC | 1 cut(s) | 996 |
| BseXI | GCAGC | 7 cut(s) | 50, 53, 553, 1403, 1406, 1409, 1412 |
| BsgI | GTGCAG | 1 cut(s) | 840 |
| BshFI | GGCC | 1 cut(s) | 196 |
| BshNI | GGYRCC | 1 cut(s) | 911 |
| BsiHKAI | GWGCWC | 3 cut(s) | 327, 562, 996 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1304 |
| BsiSI | CCGG | 4 cut(s) | 803, 1077, 1293, 1472 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 262, 632, 797, 802, 1311, 1623 |
| BsmAI | GTCTC | 1 cut(s) | 1479 |
| BsnI | GGCC | 1 cut(s) | 196 |
| BsoBI | CYCGRG | 1 cut(s) | 1304 |
| Bsp1286I | GDGCHC | 4 cut(s) | 327, 562, 996, 1713 |
| Bsp143I | GATC | 8 cut(s) | 396, 622, 853, 1122, 1245, 1327, 1345, 1360 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 203 |
| BspACI | CCGC | 7 cut(s) | 364, 383, 905, 1320, 1463, 1520, 1614 |
| BspANI | GGCC | 1 cut(s) | 196 |
| BspCNI | CTCAG | 4 cut(s) | 160, 216, 658, 1516 |
| BspHI | TCATGA | 1 cut(s) | 327 |
| BspLI | GGNNCC | 6 cut(s) | 507, 673, 913, 1081, 1215, 1476 |
| BspMI | ACCTGC | 1 cut(s) | 276 |
| BspPI | GGATC | 5 cut(s) | 404, 617, 1130, 1253, 1353 |
| BspT107I | GGYRCC | 1 cut(s) | 911 |
| BsrBI | CCGCTC | 1 cut(s) | 905 |
| BsrDI | GCAATG | 4 cut(s) | 181, 470, 955, 1581 |
| BsrFI | RCCGGY | 1 cut(s) | 1292 |
| BsrI | ACTGG | 3 cut(s) | 1238, 1316, 1453 |
| BssAI | RCCGGY | 1 cut(s) | 1292 |
| BssECI | CCNNGG | 6 cut(s) | 373, 403, 675, 796, 814, 1270 |
| BssMI | GATC | 8 cut(s) | 396, 622, 853, 1122, 1245, 1327, 1345, 1360 |
| BssSI | CACGAG | 2 cut(s) | 943, 1404 |
| BssT1I | CCWWGG | 3 cut(s) | 373, 675, 796 |
| Bst2BI | CACGAG | 2 cut(s) | 943, 1404 |
| Bst2UI | CCWGG | 3 cut(s) | 193, 510, 713 |
| Bst4CI | ACNGT | 6 cut(s) | 223, 280, 557, 1190, 1447, 1670 |
| Bst6I | CTCTTC | 2 cut(s) | 141, 1674 |
| BstC8I | GCNNGC | 3 cut(s) | 209, 655, 877 |
| BstDEI | CTNAG | 4 cut(s) | 168, 203, 645, 1524 |
| BstDSI | CCRYGG | 1 cut(s) | 403 |
| BstEII | GGTNACC | 1 cut(s) | 704 |
| BstF5I | GGATG | 6 cut(s) | 30, 156, 778, 913, 1370, 1457 |
| BstHHI | GCGC | 1 cut(s) | 363 |
| BstKTI | GATC | 8 cut(s) | 399, 625, 856, 1125, 1248, 1330, 1348, 1363 |
| BstMAI | GTCTC | 1 cut(s) | 1479 |
| BstMBI | GATC | 8 cut(s) | 396, 622, 853, 1122, 1245, 1327, 1345, 1360 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 208, 369, 566, 911, 1397, 1400 |
| BstNI | CCWGG | 3 cut(s) | 193, 510, 713 |
| BstNSI | RCATGY | 2 cut(s) | 167, 740 |
| BstPI | GGTNACC | 1 cut(s) | 704 |
| BstSCI | CCNGG | 5 cut(s) | 191, 508, 711, 802, 1470 |
| BstSFI | CTRYAG | 1 cut(s) | 684 |
| BstSLI | GKGCMC | 1 cut(s) | 996 |
| BstV1I | GCAGC | 7 cut(s) | 50, 53, 553, 1403, 1406, 1409, 1412 |
| BstV2I | GAAGAC | 3 cut(s) | 101, 234, 1282 |
| BstX2I | RGATCY | 2 cut(s) | 1122, 1345 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 716 |
| BstYI | RGATCY | 2 cut(s) | 1122, 1345 |
| BsuRI | GGCC | 1 cut(s) | 196 |
| BtgI | CCRYGG | 1 cut(s) | 403 |
| BtgZI | GCGATG | 1 cut(s) | 540 |
| BtsCI | GGATG | 6 cut(s) | 30, 156, 778, 913, 1370, 1457 |
| BtsI | GCAGTG | 2 cut(s) | 91, 488 |
| BtsIMutI | CAGTG | 5 cut(s) | 91, 219, 488, 863, 1195 |
| BveI | ACCTGC | 1 cut(s) | 276 |
| Cac8I | GCNNGC | 3 cut(s) | 209, 655, 877 |
| CaiI | CAGNNNCTG | 1 cut(s) | 278 |
| CciI | TCATGA | 1 cut(s) | 327 |
| CfoI | GCGC | 1 cut(s) | 363 |
| Cfr10I | RCCGGY | 1 cut(s) | 1292 |
| Cfr13I | GGNCC | 3 cut(s) | 506, 800, 1214 |
| CsiI | ACCWGGT | 1 cut(s) | 711 |
| Csp6I | GTAC | 1 cut(s) | 378 |
| CviAII | CATG | 5 cut(s) | 164, 328, 737, 1379, 1654 |
| CviQI | GTAC | 1 cut(s) | 378 |
| DdeI | CTNAG | 4 cut(s) | 168, 203, 645, 1524 |
| DpnI | GATC | 8 cut(s) | 398, 624, 855, 1124, 1247, 1329, 1347, 1362 |
| DpnII | GATC | 8 cut(s) | 396, 622, 853, 1122, 1245, 1327, 1345, 1360 |
| DraI | TTTAAA | 1 cut(s) | 1662 |
| DriI | GACNNNNNGTC | 1 cut(s) | 806 |
| Eam1104I | CTCTTC | 2 cut(s) | 141, 1674 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 806 |
| EarI | CTCTTC | 2 cut(s) | 141, 1674 |
| EciI | GGCGGA | 2 cut(s) | 1509, 1603 |
| Ecl136II | GAGCTC | 1 cut(s) | 325 |
| Eco130I | CCWWGG | 3 cut(s) | 373, 675, 796 |
| Eco24I | GRGCYC | 2 cut(s) | 327, 1713 |
| Eco47I | GGWCC | 3 cut(s) | 506, 800, 1214 |
| Eco53kI | GAGCTC | 1 cut(s) | 325 |
| Eco57I | CTGAAG | 2 cut(s) | 122, 352 |
| Eco88I | CYCGRG | 1 cut(s) | 1304 |
| Eco91I | GGTNACC | 1 cut(s) | 704 |
| EcoICRI | GAGCTC | 1 cut(s) | 325 |
| EcoO109I | RGGNCCY | 1 cut(s) | 506 |
| EcoO65I | GGTNACC | 1 cut(s) | 704 |
| EcoRI | GAATTC | 1 cut(s) | 542 |
| EcoRII | CCWGG | 3 cut(s) | 191, 508, 711 |
| EcoT14I | CCWWGG | 3 cut(s) | 373, 675, 796 |
| EcoT22I | ATGCAT | 1 cut(s) | 1099 |
| EcoT38I | GRGCYC | 2 cut(s) | 327, 1713 |
| ErhI | CCWWGG | 3 cut(s) | 373, 675, 796 |
| FaeI | CATG | 5 cut(s) | 167, 331, 740, 1382, 1657 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1405, 1437 |
| FatI | CATG | 5 cut(s) | 163, 327, 736, 1378, 1653 |
| FauI | CCCGC | 1 cut(s) | 1470 |
| FauNDI | CATATG | 1 cut(s) | 667 |
| FbaI | TGATCA | 1 cut(s) | 853 |
| FblI | GTMKAC | 2 cut(s) | 810, 1607 |
| Fnu4HI | GCNGC | 8 cut(s) | 39, 42, 364, 567, 1392, 1395, 1398, 1401 |
| FokI | GGATG | 6 cut(s) | 17, 143, 765, 920, 1357, 1444 |
| FriOI | GRGCYC | 2 cut(s) | 327, 1713 |
| Fsp4HI | GCNGC | 8 cut(s) | 39, 42, 364, 567, 1392, 1395, 1398, 1401 |
| FspBI | CTAG | 2 cut(s) | 447, 1703 |
| GlaI | GCGC | 1 cut(s) | 362 |
| GluI | GCNGC | 8 cut(s) | 39, 42, 364, 567, 1392, 1395, 1398, 1401 |
| GsuI | CTGGAG | 2 cut(s) | 239, 531 |
| HaeIII | GGCC | 1 cut(s) | 196 |
| HapII | CCGG | 4 cut(s) | 803, 1077, 1293, 1472 |
| HhaI | GCGC | 1 cut(s) | 363 |
| Hin1II | CATG | 5 cut(s) | 167, 331, 740, 1382, 1657 |
| Hin6I | GCGC | 1 cut(s) | 361 |
| HinP1I | GCGC | 1 cut(s) | 361 |
| HincII | GTYRAC | 2 cut(s) | 1600, 1687 |
| HindII | GTYRAC | 2 cut(s) | 1600, 1687 |
| HinfI | GANTC | 6 cut(s) | 27, 53, 62, 106, 1439, 1604 |
| HpaI | GTTAAC | 2 cut(s) | 1600, 1687 |
| HpaII | CCGG | 4 cut(s) | 803, 1077, 1293, 1472 |
| HphI | GGTGA | 4 cut(s) | 989, 1166, 1196, 1718 |
| Hpy166II | GTNNAC | 5 cut(s) | 811, 994, 1600, 1608, 1687 |
| Hpy188I | TCNGA | 7 cut(s) | 24, 52, 58, 338, 396, 1227, 1675 |
| Hpy188III | TCNNGA | 7 cut(s) | 256, 297, 328, 887, 1065, 1298, 1482 |
| Hpy8I | GTNNAC | 5 cut(s) | 811, 994, 1600, 1608, 1687 |
| Hpy99I | CGWCG | 1 cut(s) | 1115 |
| HpyAV | CCTTC | 3 cut(s) | 497, 501, 1175 |
| HpyCH4III | ACNGT | 6 cut(s) | 223, 280, 557, 1190, 1447, 1670 |
| HpyCH4IV | ACGT | 3 cut(s) | 893, 959, 996 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 208, 369, 566, 911, 1397, 1400 |
| HpyF3I | CTNAG | 4 cut(s) | 168, 203, 645, 1524 |
| HpySE526I | ACGT | 3 cut(s) | 893, 959, 996 |
| Hsp92II | CATG | 5 cut(s) | 167, 331, 740, 1382, 1657 |
| HspAI | GCGC | 1 cut(s) | 361 |
| Ksp22I | TGATCA | 1 cut(s) | 853 |
| KspAI | GTTAAC | 2 cut(s) | 1600, 1687 |
| Kzo9I | GATC | 8 cut(s) | 396, 622, 853, 1122, 1245, 1327, 1345, 1360 |
| LmnI | GCTCC | 5 cut(s) | 11, 565, 680, 1354, 1591 |
| Lsp1109I | GCAGC | 7 cut(s) | 50, 53, 553, 1403, 1406, 1409, 1412 |
| LweI | GCATC | 1 cut(s) | 1708 |
| MabI | ACCWGGT | 1 cut(s) | 711 |
| MaeI | CTAG | 2 cut(s) | 447, 1703 |
| MaeII | ACGT | 3 cut(s) | 893, 959, 996 |
| MaeIII | GTNAC | 4 cut(s) | 704, 952, 1184, 1426 |
| MalI | GATC | 8 cut(s) | 398, 624, 855, 1124, 1247, 1329, 1347, 1362 |
| MbiI | CCGCTC | 1 cut(s) | 905 |
| MboI | GATC | 8 cut(s) | 396, 622, 853, 1122, 1245, 1327, 1345, 1360 |
| MfeI | CAATTG | 1 cut(s) | 1017 |
| MflI | RGATCY | 2 cut(s) | 1122, 1345 |
| MhlI | GDGCHC | 4 cut(s) | 327, 562, 996, 1713 |
| MluCI | AATT | 4 cut(s) | 4, 542, 1017, 1640 |
| MlyI | GAGTC | 2 cut(s) | 115, 1613 |
| MmeI | TCCRAC | 3 cut(s) | 184, 1033, 1398 |
| Mph1103I | ATGCAT | 1 cut(s) | 1099 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1420 |
| MseI | TTAA | 7 cut(s) | 213, 1208, 1281, 1599, 1620, 1661, 1686 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1704 |
| MspI | CCGG | 4 cut(s) | 803, 1077, 1293, 1472 |
| MspR9I | CCNGG | 5 cut(s) | 193, 510, 713, 804, 1472 |
| MunI | CAATTG | 1 cut(s) | 1017 |
| MvaI | CCWGG | 3 cut(s) | 193, 510, 713 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 208, 369, 566, 911, 1397, 1400 |
| NciI | CCSGG | 2 cut(s) | 804, 1472 |
| NdeI | CATATG | 1 cut(s) | 667 |
| NdeII | GATC | 8 cut(s) | 396, 622, 853, 1122, 1245, 1327, 1345, 1360 |
| NlaIII | CATG | 5 cut(s) | 167, 331, 740, 1382, 1657 |
| NlaIV | GGNNCC | 6 cut(s) | 507, 673, 913, 1081, 1215, 1476 |
| NmuCI | GTSAC | 1 cut(s) | 1184 |
| NsiI | ATGCAT | 1 cut(s) | 1099 |
| NspI | RCATGY | 2 cut(s) | 167, 740 |
| PagI | TCATGA | 1 cut(s) | 327 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 400 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1420 |
| PfeI | GAWTC | 4 cut(s) | 27, 53, 62, 1439 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 797 |
| PfoI | TCCNGGA | 1 cut(s) | 508 |
| PkrI | GCNGC | 8 cut(s) | 40, 43, 365, 568, 1393, 1396, 1399, 1402 |
| PleI | GAGTC | 2 cut(s) | 114, 1612 |
| PpsI | GAGTC | 2 cut(s) | 114, 1612 |
| PpuMI | RGGWCCY | 1 cut(s) | 506 |
| PsiI | TTATAA | 1 cut(s) | 591 |
| Psp124BI | GAGCTC | 1 cut(s) | 327 |
| Psp1406I | AACGTT | 1 cut(s) | 893 |
| Psp5II | RGGWCCY | 1 cut(s) | 506 |
| Psp6I | CCWGG | 3 cut(s) | 191, 508, 711 |
| PspEI | GGTNACC | 1 cut(s) | 704 |
| PspGI | CCWGG | 3 cut(s) | 191, 508, 711 |
| PspN4I | GGNNCC | 6 cut(s) | 507, 673, 913, 1081, 1215, 1476 |
| PspPI | GGNCC | 3 cut(s) | 506, 800, 1214 |
| PspPPI | RGGWCCY | 1 cut(s) | 506 |
| PstNI | CAGNNNCTG | 1 cut(s) | 278 |
| PsuI | RGATCY | 2 cut(s) | 1122, 1345 |
| RsaI | GTAC | 1 cut(s) | 379 |
| RsaNI | GTAC | 1 cut(s) | 378 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1704 |
| SacI | GAGCTC | 1 cut(s) | 327 |
| SaqAI | TTAA | 7 cut(s) | 213, 1208, 1281, 1599, 1620, 1661, 1686 |
| SatI | GCNGC | 8 cut(s) | 39, 42, 364, 567, 1392, 1395, 1398, 1401 |
| Sau3AI | GATC | 8 cut(s) | 396, 622, 853, 1122, 1245, 1327, 1345, 1360 |
| Sau96I | GGNCC | 3 cut(s) | 506, 800, 1214 |
| SchI | GAGTC | 2 cut(s) | 115, 1613 |
| ScrFI | CCNGG | 5 cut(s) | 193, 510, 713, 804, 1472 |
| SduI | GDGCHC | 4 cut(s) | 327, 562, 996, 1713 |
| SexAI | ACCWGGT | 1 cut(s) | 711 |
| SfaNI | GCATC | 1 cut(s) | 1708 |
| SfcI | CTRYAG | 1 cut(s) | 684 |
| SinI | GGWCC | 3 cut(s) | 506, 800, 1214 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1704 |
| SmlI | CTYRAG | 3 cut(s) | 103, 320, 500 |
| SmoI | CTYRAG | 3 cut(s) | 103, 320, 500 |
| Sse9I | AATT | 4 cut(s) | 4, 542, 1017, 1640 |
| SsiI | CCGC | 7 cut(s) | 364, 383, 905, 1320, 1463, 1520, 1614 |
| SspMI | CTAG | 2 cut(s) | 447, 1703 |
| SstI | GAGCTC | 1 cut(s) | 327 |
| StyD4I | CCNGG | 5 cut(s) | 191, 508, 711, 802, 1470 |
| StyI | CCWWGG | 3 cut(s) | 373, 675, 796 |
| TaaI | ACNGT | 6 cut(s) | 223, 280, 557, 1190, 1447, 1670 |
| TaiI | ACGT | 3 cut(s) | 896, 962, 999 |
| TaqII | GACCGA | 1 cut(s) | 246 |
| TasI | AATT | 4 cut(s) | 4, 542, 1017, 1640 |
| TauI | GCSGC | 1 cut(s) | 366 |
| TfiI | GAWTC | 4 cut(s) | 27, 53, 62, 1439 |
| Tru1I | TTAA | 7 cut(s) | 213, 1208, 1281, 1599, 1620, 1661, 1686 |
| Tru9I | TTAA | 7 cut(s) | 213, 1208, 1281, 1599, 1620, 1661, 1686 |
| TscAI | CASTG | 5 cut(s) | 98, 226, 488, 863, 1195 |
| TseFI | GTSAC | 1 cut(s) | 1184 |
| TseI | GCWGC | 7 cut(s) | 38, 41, 566, 1391, 1394, 1397, 1400 |
| Tsp45I | GTSAC | 1 cut(s) | 1184 |
| TspDTI | ATGAA | 7 cut(s) | 17, 19, 335, 609, 767, 1395, 1570 |
| TspGWI | ACGGA | 1 cut(s) | 1151 |
| TspRI | CASTG | 5 cut(s) | 98, 226, 488, 863, 1195 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 797 |
| VneI | GTGCAC | 1 cut(s) | 992 |
| VpaK11BI | GGWCC | 3 cut(s) | 506, 800, 1214 |
| XapI | RAATTY | 2 cut(s) | 4, 542 |
| XceI | RCATGY | 2 cut(s) | 167, 740 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 665 |
| XmiI | GTMKAC | 2 cut(s) | 810, 1607 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1420 |
| XspI | CTAG | 2 cut(s) | 447, 1703 |
| Zsp2I | ATGCAT | 1 cut(s) | 1099 |