Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009910

Physical Location & Seq

Genomic Coordinates Reverse (-)

15142653 .. 15144221

Gene Structure 1569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G36060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACTCTTGGCTCAGGATCGAGTGTTGTCGTTCCGAGGAATTTCCGGTTGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACAACACTGTACATGAGGGTCGGATTTATCAGTTGAAGCTCTTCTGTGACAAAGATTACCCTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTGGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACAATGGAGGACATACTGACTCAATTGAAGAAGGAGATGGCTGCATCGCATAACCGGAAGCTTGTTCAACCTCCCGAAGGAACTTTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070534 GO:0070647 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04624 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

145

Amino Acids

16.48

Weight (kDa)

6.51

Isoelectric Point (pI)

23.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	43 - 132	1.2e-12	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36060 AT2G36060 AT2G36060
fragaria_vesca	FvH4_3g25890
malus_domestica	MD03G1151600.v1.1 MD11G1170800.v1.1
pyrus_communis	pycom11g14460
rosa_chinensis	RchiOBHm_Chr4g0404321 RchiOBHm_Chr4g0405771 RchiOBHm_Chr5g0047211
rosa_laevigata	RLG00000034479
rosa_multiflora	Rmu_sc0002310.1_g000026 Rmu_sc0003154.1_g000011
rosa_roxburghii	Rroxscaffold_1G00034170
rosa_rugosa	Rorug05G0234900 Rorug05G0235000 Rorug05G0235000 Rorug05G0235000
rosa_samantha	Rh5BG322400 Rh5DG333400
rosa_wichuraiana	Rw5G029290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	259
AclWI	GGATC	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	40
AfaI	GTAC	2 cut(s)	177, 344
AfiI	CCNNNNNNNGG	2 cut(s)	52, 422
AgsI	TTSAA	5 cut(s)	65, 202, 306, 373, 413
AluBI	AGCT	4 cut(s)	61, 102, 205, 406
AluI	AGCT	4 cut(s)	61, 102, 205, 406
AlwI	GGATC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	40
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	161
BaeI	ACNNNNGTAYC	2 cut(s)	279, 312
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	3 cut(s)	83, 110, 376
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	251
BmsI	GCATC	1 cut(s)	398
BoxI	GACNNNNGTC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	74
Bpu10I	CCTNAGC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	35
BsaWI	WCCGGW	2 cut(s)	45, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 422
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	151, 335
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	52, 422
BseMII	CTCAG	2 cut(s)	27, 219
BseNI	ACTGG	2 cut(s)	151, 335
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	373
Bsh1236I	CGCG	1 cut(s)	259
BsiSI	CCGG	3 cut(s)	46, 291, 400
BslI	CCNNNNNNNGG	2 cut(s)	52, 422
Bsp1407I	TGTACA	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	17
BspCNI	CTCAG	2 cut(s)	26, 220
BspFNI	CGCG	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	251
BspPI	GGATC	1 cut(s)	25
BspQI	GCTCTTC	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	151, 335
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	1 cut(s)	17
Bst4CI	ACNGT	4 cut(s)	97, 175, 244, 342
Bst6I	CTCTTC	1 cut(s)	212
BstAUI	TGTACA	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	13, 228
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstPAI	GACNNNNGTC	1 cut(s)	275
BstUI	CGCG	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	373
BtgZI	GCGATG	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	171
CfoI	GCGC	1 cut(s)	138
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	176, 343
CviAII	CATG	3 cut(s)	179, 268, 284
CviJI	RGCY	6 cut(s)	12, 61, 102, 205, 386, 406
CviKI_1	RGCY	6 cut(s)	12, 61, 102, 205, 386, 406
CviQI	GTAC	2 cut(s)	176, 343
DdeI	CTNAG	2 cut(s)	13, 228
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	161
EcoNI	CCTNNNNNAGG	1 cut(s)	420
FaeI	CATG	3 cut(s)	182, 271, 287
FaiI	YATR	8 cut(s)	105, 132, 134, 180, 269, 285, 359, 396
FatI	CATG	3 cut(s)	178, 267, 283
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	387
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	1 cut(s)	387
GsuI	CTGGAG	1 cut(s)	74
HapII	CCGG	3 cut(s)	46, 291, 400
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	3 cut(s)	182, 271, 287
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	3 cut(s)	4, 302, 364
HpaII	CCGG	3 cut(s)	46, 291, 400
Hpy166II	GTNNAC	2 cut(s)	280, 345
Hpy188I	TCNGA	3 cut(s)	36, 189, 240
Hpy188III	TCNNGA	2 cut(s)	15, 419
Hpy8I	GTNNAC	2 cut(s)	280, 345
HpyAV	CCTTC	2 cut(s)	370, 416
HpyCH4III	ACNGT	4 cut(s)	97, 175, 244, 342
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	326, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	2 cut(s)	13, 228
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	3 cut(s)	182, 271, 287
HspAI	GCGC	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	17
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	7 cut(s)	38, 59, 132, 240, 304, 316, 413
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	1 cut(s)	398
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	3 cut(s)	199, 385, 424
MfeI	CAATTG	1 cut(s)	368
MluCI	AATT	2 cut(s)	40, 368
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	2 cut(s)	167, 263
MnlI	CCTC	7 cut(s)	30, 49, 174, 175, 246, 346, 426
MroXI	GAANNNNTTC	1 cut(s)	206
MslI	CAYNNNNRTG	1 cut(s)	131
MspI	CCGG	3 cut(s)	46, 291, 400
MunI	CAATTG	1 cut(s)	368
MvnI	CGCG	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	3 cut(s)	182, 271, 287
NlaIV	GGNNCC	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	212
PciSI	GCTCTTC	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PshAI	GACNNNNGTC	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	161
RsaI	GTAC	2 cut(s)	177, 344
RsaNI	GTAC	2 cut(s)	176, 343
RseI	CAYNNNNRTG	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	212
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	161
SchI	GAGTC	1 cut(s)	358
SetI	ASST	8 cut(s)	63, 70, 82, 104, 207, 238, 408, 418
SfaNI	GCATC	1 cut(s)	398
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	40, 368
TaaI	ACNGT	4 cut(s)	97, 175, 244, 342
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	20
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	2 cut(s)	40, 368
TatI	WGTACW	2 cut(s)	175, 342
TfiI	GAWTC	1 cut(s)	302
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	212
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	161
XagI	CCTNNNNNAGG	1 cut(s)	420
XapI	RAATTY	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.