AT2G36130

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016146
Physical Location & Seq
Forward (+)
15166720 .. 15168497
1778 bp
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UTR
Exon/CDS
Intron
AT2G36130.1

Sequence Viewer

Length: 495 bp
ATGTCGGCAAGACCTGAAGGAAGTCCGCCGGAGGTTACGCTCGAGACCTCCATGGGTCCTTTCACCGTCGAGATGTATTACAAACACTCCCCGAGAACTTGCCGGAACTTCCTTGAGCTATCCCGGAGAGGTTACTATGACAACGTTCTGTTTCACAGAATCGTCAAGGATTTCATTGTGCAAGGTGGGGATCCTACAGGAACTGGAAGAGGTGGTGAATCCATTTATGGTTCGAAGTTTGAGGATGAGATAAACAAAGAGTTGAAGCACACAGGAGCCGGAATTTTATCAATGGCGAACGCTGGTCCTAATACAAATGGGAGTCAATTTTTCATCACCTTAGCCCCACAACCGTCCTTGGATGGAAAACACACAATATTTGGTAGAGTGTGCCGAGGCATGGAGGTGATCAAGAGGCTCGGTAGTGTCCAAACCGATAACACCGACAGGCCGATCCATGAAGTGAAGATTCTAAGGACCAAAGTGATCGATTGA

Protein Analysis

164

Amino Acids

18.23

Weight (kDa)

8.57

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 12 - 162 7.9e-54 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36130
fragaria_vesca FvH4_6g19480
malus_domestica MD12G1030900.v1.1 MD14G1031400.v1.1
prunus_persica Prupe.7G101500_v2.0.a1
pyrus_communis pycom12g02890 pycom14g02830
rosa_chinensis RchiOBHm_Chr3g0474811
rosa_laevigata RLG00000023893
rosa_multiflora Rmu_sc0004848.1_g000010
rosa_roxburghii Rroxscaffold_6G00406830
rosa_rugosa Rorug03G0144100
rosa_samantha Rh3BG223700 Rh3CG218600
rosa_wichuraiana Rw3G017650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 26
AclI AACGTT 1 cut(s) 144
AclWI GGATC 3 cut(s) 185, 198, 448
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 400
AgsI TTSAA 1 cut(s) 265
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 3 cut(s) 185, 198, 448
AlwNI CAGNNNCTG 1 cut(s) 203
Ama87I CYCGRG 2 cut(s) 41, 91
AoxI GGCC 1 cut(s) 449
ApoI RAATTY 1 cut(s) 282
AspS9I GGNCC 3 cut(s) 56, 305, 477
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 4 cut(s) 55, 227, 328, 418
AsuII TTCGAA 1 cut(s) 233
AvaI CYCGRG 2 cut(s) 41, 91
AvaII GGWCC 3 cut(s) 56, 305, 477
BamHI GGATCC 1 cut(s) 190
BccI CCATC 1 cut(s) 356
BclI TGATCA 1 cut(s) 408
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 124
Bme18I GGWCC 3 cut(s) 56, 305, 477
BmeT110I CYCGRG 2 cut(s) 41, 91
BmgT120I GGNCC 3 cut(s) 56, 305, 477
BmiI GGNNCC 3 cut(s) 57, 192, 277
BmrFI CCNGG 1 cut(s) 124
Bpu10I CCTNAGC 1 cut(s) 340
Bpu14I TTCGAA 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 124
Bsa29I ATCGAT 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 51, 357, 394
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 400
Bse1I ACTGG 1 cut(s) 208
BseCI ATCGAT 1 cut(s) 489
BseDI CCNNGG 3 cut(s) 51, 357, 394
BseGI GGATG 2 cut(s) 250, 367
BseLI CCNNNNNNNGG 1 cut(s) 400
BseNI ACTGG 1 cut(s) 208
BshFI GGCC 1 cut(s) 451
BshVI ATCGAT 1 cut(s) 489
BsiHKCI CYCGRG 2 cut(s) 41, 91
BsiSI CCGG 4 cut(s) 29, 103, 124, 279
BslI CCNNNNNNNGG 1 cut(s) 400
BsmAI GTCTC 1 cut(s) 38
BsnI GGCC 1 cut(s) 451
Bso31I GGTCTC 1 cut(s) 38
BsoBI CYCGRG 2 cut(s) 41, 91
Bsp119I TTCGAA 1 cut(s) 233
Bsp143I GATC 4 cut(s) 190, 408, 453, 486
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 1 cut(s) 26
BspANI GGCC 1 cut(s) 451
BspDI ATCGAT 1 cut(s) 489
BspLI GGNNCC 3 cut(s) 57, 192, 277
BspPI GGATC 3 cut(s) 185, 198, 448
BspT104I TTCGAA 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 38
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 3 cut(s) 51, 357, 394
BssMI GATC 4 cut(s) 190, 408, 453, 486
BssT1I CCWWGG 2 cut(s) 51, 357
Bst4CI ACNGT 2 cut(s) 67, 354
Bst6I CTCTTC 1 cut(s) 202
BstBI TTCGAA 1 cut(s) 233
BstDEI CTNAG 2 cut(s) 340, 473
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 250, 367
BstKTI GATC 4 cut(s) 193, 411, 456, 489
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 4 cut(s) 190, 408, 453, 486
BstSCI CCNGG 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
Bsu15I ATCGAT 1 cut(s) 489
BsuRI GGCC 1 cut(s) 451
BsuTUI ATCGAT 1 cut(s) 489
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 250, 367
CaiI CAGNNNCTG 1 cut(s) 203
Cfr13I GGNCC 3 cut(s) 56, 305, 477
ClaI ATCGAT 1 cut(s) 489
CviAII CATG 3 cut(s) 52, 400, 458
CviJI RGCY 5 cut(s) 118, 278, 344, 418, 451
CviKI_1 RGCY 5 cut(s) 118, 278, 344, 418, 451
DdeI CTNAG 2 cut(s) 340, 473
DpnI GATC 4 cut(s) 192, 410, 455, 488
DpnII GATC 4 cut(s) 190, 408, 453, 486
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
EciI GGCGGA 1 cut(s) 15
Eco130I CCWWGG 2 cut(s) 51, 357
Eco31I GGTCTC 1 cut(s) 38
Eco47I GGWCC 3 cut(s) 56, 305, 477
Eco57I CTGAAG 1 cut(s) 36
Eco88I CYCGRG 2 cut(s) 41, 91
EcoO109I RGGNCCY 1 cut(s) 56
EcoT14I CCWWGG 2 cut(s) 51, 357
ErhI CCWWGG 2 cut(s) 51, 357
FaeI CATG 3 cut(s) 55, 403, 461
FaiI YATR 5 cut(s) 53, 138, 228, 401, 459
FatI CATG 3 cut(s) 51, 399, 457
FbaI TGATCA 1 cut(s) 408
FokI GGATG 2 cut(s) 257, 374
HaeIII GGCC 1 cut(s) 451
HapII CCGG 4 cut(s) 29, 103, 124, 279
Hin1II CATG 3 cut(s) 55, 403, 461
HinfI GANTC 4 cut(s) 159, 218, 322, 469
HpaII CCGG 4 cut(s) 29, 103, 124, 279
HphI GGTGA 4 cut(s) 55, 227, 328, 418
Hpy188III TCNNGA 3 cut(s) 43, 70, 412
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 11
HpyCH4III ACNGT 2 cut(s) 67, 354
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 181
HpyF3I CTNAG 2 cut(s) 340, 473
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 3 cut(s) 55, 403, 461
Ksp22I TGATCA 1 cut(s) 408
Kzo9I GATC 4 cut(s) 190, 408, 453, 486
LmnI GCTCC 1 cut(s) 275
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 34, 131
MalI GATC 4 cut(s) 192, 410, 455, 488
MboI GATC 4 cut(s) 190, 408, 453, 486
MboII GAAGA 2 cut(s) 219, 478
MflI RGATCY 1 cut(s) 190
MluCI AATT 2 cut(s) 282, 326
MlyI GAGTC 1 cut(s) 331
MnlI CCTC 8 cut(s) 25, 58, 122, 203, 235, 389, 397, 408
MslI CAYNNNNRTG 1 cut(s) 404
MspI CCGG 4 cut(s) 29, 103, 124, 279
MspR9I CCNGG 1 cut(s) 124
NciI CCSGG 1 cut(s) 124
NcoI CCATGG 1 cut(s) 51
NdeII GATC 4 cut(s) 190, 408, 453, 486
NlaIII CATG 3 cut(s) 55, 403, 461
NlaIV GGNNCC 3 cut(s) 57, 192, 277
NmeAIII GCCGAG 1 cut(s) 419
NspV TTCGAA 1 cut(s) 233
PaeR7I CTCGAG 1 cut(s) 41
PfeI GAWTC 3 cut(s) 159, 218, 469
PfoI TCCNGGA 1 cut(s) 122
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
PpuMI RGGWCCY 1 cut(s) 56
Psp1406I AACGTT 1 cut(s) 144
Psp5II RGGWCCY 1 cut(s) 56
PspN4I GGNNCC 3 cut(s) 57, 192, 277
PspPI GGNCC 3 cut(s) 56, 305, 477
PspPPI RGGWCCY 1 cut(s) 56
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 404
Sau3AI GATC 4 cut(s) 190, 408, 453, 486
Sau96I GGNCC 3 cut(s) 56, 305, 477
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 1 cut(s) 124
SfcI CTRYAG 1 cut(s) 195
Sfr274I CTCGAG 1 cut(s) 41
SfuI TTCGAA 1 cut(s) 233
SinI GGWCC 3 cut(s) 56, 305, 477
SlaI CTCGAG 1 cut(s) 41
SmiMI CAYNNNNRTG 1 cut(s) 404
SmlI CTYRAG 2 cut(s) 41, 113
SmoI CTYRAG 2 cut(s) 41, 113
Sse9I AATT 2 cut(s) 282, 326
SsiI CCGC 1 cut(s) 26
SspI AATATT 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 2 cut(s) 51, 357
TaaI ACNGT 2 cut(s) 67, 354
TaiI ACGT 1 cut(s) 147
TaqI TCGA 4 cut(s) 42, 69, 233, 489
TasI AATT 2 cut(s) 282, 326
TfiI GAWTC 3 cut(s) 159, 218, 469
TspDTI ATGAA 3 cut(s) 163, 322, 474
VpaK11BI GGWCC 3 cut(s) 56, 305, 477
XapI RAATTY 1 cut(s) 282
XhoI CTCGAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.