Rw3G017650

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0016146
Physical Location & Seq
Reverse (-)
19344947 .. 19347025
2079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017650.1

Sequence Viewer

Length: 459 bp
ATGTGGGCGAGTGCAGAAGGAGGGGCACCGGAGGTGACCCTAGAGACCTCCATGGGGGCTTTCACCGTTGAGCTTTACTACAAGCACGCACCCAGGACTTGCAGGAACTTCATCGAGCTCTCTCGCAGAGGCTACTACAACAATGTCAAGTGGGATCCTACTGGGACTGGAAGGGGTGGAGAATCCATTTATGGTTCAAAATTTGAGGATGAGATAAGACCAGAGTTGAAGCATACTGGAGCTGGAATCTTGTCCATGGCAAATGCTGGTCCAGATTCAAATGGAAGCCAGTTCTTTATCACGCTCGCACCGTGTGCTCCGCTGGATGGAAAACACACAATATTTGGAAGAGTATGCAGTGGAATGGAAATCATCAAAAGACTGGGTAGTGTCCAAACTGATAATAGTGATAGGCCGGTCCATGATGTGAAGATACTGCGGACATCTGTCAAGGATTAG

Protein Analysis

152

Amino Acids

16.66

Weight (kDa)

6.9

Isoelectric Point (pI)

30.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 12 - 150 2.8e-38 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36130
fragaria_vesca FvH4_6g19480
malus_domestica MD12G1030900.v1.1 MD14G1031400.v1.1
prunus_persica Prupe.7G101500_v2.0.a1
pyrus_communis pycom12g02890 pycom14g02830
rosa_chinensis RchiOBHm_Chr3g0474811
rosa_laevigata RLG00000023893
rosa_multiflora Rmu_sc0004848.1_g000010
rosa_roxburghii Rroxscaffold_6G00406830
rosa_rugosa Rorug03G0144100
rosa_samantha Rh3BG223700 Rh3CG218600
rosa_wichuraiana Rw3G017650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AciI CCGC 2 cut(s) 320, 439
AclWI GGATC 2 cut(s) 149, 162
AcsI RAATTY 1 cut(s) 200
AdeI CACNNNGTG 1 cut(s) 314
AfiI CCNNNNNNNGG 2 cut(s) 54, 326
AgsI TTSAA 3 cut(s) 198, 229, 279
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 3 cut(s) 73, 118, 242
AluI AGCT 3 cut(s) 73, 118, 242
Alw21I GWGCWC 2 cut(s) 120, 319
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 2 cut(s) 149, 162
AoxI GGCC 1 cut(s) 413
ApoI RAATTY 1 cut(s) 200
AspS9I GGNCC 2 cut(s) 269, 418
AsuHPI GGTGA 2 cut(s) 46, 55
AvaII GGWCC 2 cut(s) 269, 418
BaeGI GKGCMC 1 cut(s) 28
BamHI GGATCC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 120
Bbv12I GWGCWC 2 cut(s) 120, 319
BccI CCATC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 94
Bme18I GGWCC 2 cut(s) 269, 418
BmgT120I GGNCC 2 cut(s) 269, 418
BmiI GGNNCC 2 cut(s) 27, 156
BmrFI CCNGG 1 cut(s) 94
BmrI ACTGGG 2 cut(s) 171, 392
BmuI ACTGGG 2 cut(s) 171, 392
BoxI GACNNNNGTC 1 cut(s) 446
BpmI CTGGAG 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 51, 92, 255
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 326
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 5 cut(s) 166, 172, 241, 289, 387
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 3 cut(s) 51, 92, 255
BseGI GGATG 2 cut(s) 214, 331
BseLI CCNNNNNNNGG 2 cut(s) 54, 326
BseNI ACTGG 5 cut(s) 166, 172, 241, 289, 387
BseSI GKGCMC 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 1 cut(s) 415
BshNI GGYRCC 1 cut(s) 25
BsiHKAI GWGCWC 2 cut(s) 120, 319
BsiSI CCGG 2 cut(s) 29, 416
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 2 cut(s) 54, 326
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 1 cut(s) 415
Bso31I GGTCTC 1 cut(s) 38
Bsp1286I GDGCHC 3 cut(s) 28, 120, 319
Bsp143I GATC 1 cut(s) 154
Bsp19I CCATGG 2 cut(s) 51, 255
BspACI CCGC 2 cut(s) 320, 439
BspANI GGCC 1 cut(s) 415
BspLI GGNNCC 2 cut(s) 27, 156
BspPI GGATC 2 cut(s) 149, 162
BspT107I GGYRCC 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 415
BsrI ACTGG 5 cut(s) 166, 172, 241, 289, 387
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 3 cut(s) 51, 92, 255
BssMI GATC 1 cut(s) 154
BssT1I CCWWGG 2 cut(s) 51, 255
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 2 cut(s) 67, 312
Bst6I CTCTTC 1 cut(s) 343
BstAPI GCANNNNNTGC 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 87, 306
BstDSI CCRYGG 2 cut(s) 51, 255
BstEII GGTNACC 1 cut(s) 34
BstF5I GGATG 2 cut(s) 214, 331
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 94
BstPAI GACNNNNGTC 1 cut(s) 446
BstPI GGTNACC 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 92
BstSLI GKGCMC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BsuRI GGCC 1 cut(s) 415
BtgI CCRYGG 2 cut(s) 51, 255
BtsCI GGATG 2 cut(s) 214, 331
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 364
Cac8I GCNNGC 2 cut(s) 87, 306
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 2 cut(s) 269, 418
CviAII CATG 3 cut(s) 52, 256, 422
CviJI RGCY 7 cut(s) 59, 73, 118, 132, 242, 288, 415
CviKI_1 RGCY 7 cut(s) 59, 73, 118, 132, 242, 288, 415
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
DraIII CACNNNGTG 1 cut(s) 314
Eam1104I CTCTTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 343
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 2 cut(s) 51, 255
Eco24I GRGCYC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 269, 418
Eco53kI GAGCTC 1 cut(s) 118
Eco91I GGTNACC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 118
EcoO65I GGTNACC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 92
EcoT14I CCWWGG 2 cut(s) 51, 255
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 2 cut(s) 51, 255
FaeI CATG 3 cut(s) 55, 259, 425
FaiI YATR 6 cut(s) 53, 192, 234, 257, 355, 423
FaqI GGGAC 1 cut(s) 178
FatI CATG 3 cut(s) 51, 255, 421
FokI GGATG 2 cut(s) 221, 338
FriOI GRGCYC 1 cut(s) 120
FspBI CTAG 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 1 cut(s) 415
HapII CCGG 2 cut(s) 29, 416
Hin1II CATG 3 cut(s) 55, 259, 425
HinfI GANTC 3 cut(s) 182, 246, 275
HpaII CCGG 2 cut(s) 29, 416
HphI GGTGA 2 cut(s) 46, 55
Hpy188III TCNNGA 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 11, 165
HpyCH4III ACNGT 2 cut(s) 67, 312
HpyCH4V TGCA 3 cut(s) 14, 102, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
Hsp92II CATG 3 cut(s) 55, 259, 425
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 2 cut(s) 239, 322
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 34
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 2 cut(s) 360, 442
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 3 cut(s) 28, 120, 319
MluCI AATT 1 cut(s) 200
MnlI CCTC 5 cut(s) 14, 25, 58, 122, 199
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 2 cut(s) 29, 416
MspR9I CCNGG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 314
NcoI CCATGG 2 cut(s) 51, 255
NdeII GATC 1 cut(s) 154
NlaIII CATG 3 cut(s) 55, 259, 425
NlaIV GGNNCC 2 cut(s) 27, 156
NmuCI GTSAC 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 308
PfeI GAWTC 3 cut(s) 182, 246, 275
PshAI GACNNNNGTC 1 cut(s) 446
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 92
PspEI GGTNACC 1 cut(s) 34
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 27, 156
PspPI GGNCC 2 cut(s) 269, 418
PsuI RGATCY 1 cut(s) 154
SacI GAGCTC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 2 cut(s) 269, 418
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 3 cut(s) 28, 120, 319
SetI ASST 5 cut(s) 36, 50, 75, 120, 244
SinI GGWCC 2 cut(s) 269, 418
Sse9I AATT 1 cut(s) 200
SsiI CCGC 2 cut(s) 320, 439
SspI AATATT 1 cut(s) 342
SspMI CTAG 1 cut(s) 41
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 2 cut(s) 51, 255
TaaI ACNGT 2 cut(s) 67, 312
TaqI TCGA 1 cut(s) 114
TasI AATT 1 cut(s) 200
TfiI GAWTC 3 cut(s) 182, 246, 275
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 100
TspRI CASTG 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 269, 418
XapI RAATTY 1 cut(s) 200
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.