FvH4_6g19480

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016146
Physical Location & Seq
Reverse (-)
13026091 .. 13028999
2909 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19480.t1

Sequence Viewer

Length: 495 bp
ATGTGGGCACCGGCAGAAGGAGGGGCACCGGAGGTGACCCTCGAGACCTCCATGGGCGCTTTCACCCTTGAGCTTTACTACAAGCACGCGCCCAGGACTTGCAGGAACTTCATCGAGCTCAATCGCAGAAACTACTACGACAATGTCAAGTTCCACAGAATCATCAAGGATTTCATAGTGCAAGGTGGTGATCCTACTGGGACTGGAAGGGGTGGAGAATCCATTTATGGTTCGAAATTTGAGGATGAGATAAAACCGGATTTGAAGCATACTGGAGCTGGAATCTTGTCCATGGCAAATGCTGGTCCGGATACAAATGGAAGCCAGTTCTTTATCACACTCGCTCCATGTCCTTCGCTGGATGGAAAACACACAATATTTGGAAGAGTGTGCAGTGGAATGGAAATCATCAAAAGACTCGGTAGTGTCCAAACTGATAATAGTGATAGGCCAGTCCATGATGTGAAAATACTGCGGACAATAATCAAGGACTAG

Protein Analysis

165

Amino Acids

18.12

Weight (kDa)

6.96

Isoelectric Point (pI)

26.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 12 - 160 6.9e-54 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36130
fragaria_vesca FvH4_6g19480
malus_domestica MD12G1030900.v1.1 MD14G1031400.v1.1
prunus_persica Prupe.7G101500_v2.0.a1
pyrus_communis pycom12g02890 pycom14g02830
rosa_chinensis RchiOBHm_Chr3g0474811
rosa_laevigata RLG00000023893
rosa_multiflora Rmu_sc0004848.1_g000010
rosa_roxburghii Rroxscaffold_6G00406830
rosa_rugosa Rorug03G0144100
rosa_samantha Rh3BG223700 Rh3CG218600
rosa_wichuraiana Rw3G017650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 7, 25
AccII CGCG 1 cut(s) 89
AccIII TCCGGA 1 cut(s) 307
AciI CCGC 1 cut(s) 475
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 1 cut(s) 265
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 3 cut(s) 73, 118, 278
AluI AGCT 3 cut(s) 73, 118, 278
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 1 cut(s) 185
Ama87I CYCGRG 1 cut(s) 41
Aor13HI TCCGGA 1 cut(s) 307
AoxI GGCC 1 cut(s) 449
ApoI RAATTY 1 cut(s) 236
AspLEI GCGC 2 cut(s) 59, 91
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 3 cut(s) 46, 55, 200
AsuII TTCGAA 1 cut(s) 233
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 1 cut(s) 305
BaeGI GKGCMC 2 cut(s) 10, 28
BanI GGYRCC 2 cut(s) 7, 25
BanII GRGCYC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 120
BccI CCATC 1 cut(s) 356
BciT130I CCWGG 1 cut(s) 94
BciVI GTATCC 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 493
BfoI RGCGCY 1 cut(s) 60
BfuI GTATCC 1 cut(s) 304
Bme1390I CCNGG 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 305
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 2 cut(s) 9, 27
BmrFI CCNGG 1 cut(s) 94
BmrI ACTGGG 1 cut(s) 207
BmuI ACTGGG 1 cut(s) 207
BpmI CTGGAG 1 cut(s) 294
Bpu14I TTCGAA 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 51, 92, 291
BsaWI WCCGGW 3 cut(s) 28, 256, 307
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 5 cut(s) 202, 208, 277, 325, 452
BseAI TCCGGA 1 cut(s) 307
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 3 cut(s) 51, 92, 291
BseGI GGATG 2 cut(s) 250, 367
BseLI CCNNNNNNNGG 1 cut(s) 17
BseNI ACTGG 5 cut(s) 202, 208, 277, 325, 452
BseSI GKGCMC 2 cut(s) 10, 28
BsgI GTGCAG 1 cut(s) 412
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 1 cut(s) 451
BshNI GGYRCC 2 cut(s) 7, 25
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 4 cut(s) 11, 29, 257, 308
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 1 cut(s) 451
Bso31I GGTCTC 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 41
Bsp119I TTCGAA 1 cut(s) 233
Bsp1286I GDGCHC 3 cut(s) 10, 28, 120
Bsp13I TCCGGA 1 cut(s) 307
Bsp143I GATC 1 cut(s) 190
Bsp19I CCATGG 2 cut(s) 51, 291
BspACI CCGC 1 cut(s) 475
BspANI GGCC 1 cut(s) 451
BspEI TCCGGA 1 cut(s) 307
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 2 cut(s) 9, 27
BspPI GGATC 1 cut(s) 185
BspT104I TTCGAA 1 cut(s) 233
BspT107I GGYRCC 2 cut(s) 7, 25
BspTNI GGTCTC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 5 cut(s) 202, 208, 277, 325, 452
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 3 cut(s) 51, 92, 291
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 2 cut(s) 51, 291
Bst2UI CCWGG 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 379
BstBI TTCGAA 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 87
BstDSI CCRYGG 2 cut(s) 51, 291
BstEII GGTNACC 1 cut(s) 34
BstF5I GGATG 2 cut(s) 250, 367
BstFNI CGCG 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 2 cut(s) 59, 91
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 1 cut(s) 190
BstNI CCWGG 1 cut(s) 94
BstPI GGTNACC 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 92
BstSLI GKGCMC 2 cut(s) 10, 28
BstUI CGCG 1 cut(s) 89
BsuI GTATCC 1 cut(s) 304
BsuRI GGCC 1 cut(s) 451
BtgI CCRYGG 2 cut(s) 51, 291
BtsCI GGATG 2 cut(s) 250, 367
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 1 cut(s) 87
CfoI GCGC 2 cut(s) 59, 91
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 305
CviAII CATG 4 cut(s) 52, 292, 348, 458
CviJI RGCY 5 cut(s) 73, 118, 278, 324, 451
CviKI_1 RGCY 5 cut(s) 73, 118, 278, 324, 451
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 2 cut(s) 51, 291
Eco24I GRGCYC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 305
Eco53kI GAGCTC 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 41
Eco91I GGTNACC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 118
EcoO65I GGTNACC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 92
EcoT14I CCWWGG 2 cut(s) 51, 291
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 2 cut(s) 51, 291
FaeI CATG 4 cut(s) 55, 295, 351, 461
FaiI YATR 7 cut(s) 53, 176, 228, 270, 293, 349, 459
FaqI GGGAC 1 cut(s) 214
FatI CATG 4 cut(s) 51, 291, 347, 457
FokI GGATG 2 cut(s) 257, 374
FriOI GRGCYC 1 cut(s) 120
FspBI CTAG 1 cut(s) 493
GlaI GCGC 2 cut(s) 58, 90
GsuI CTGGAG 1 cut(s) 294
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 1 cut(s) 451
HapII CCGG 4 cut(s) 11, 29, 257, 308
HhaI GCGC 2 cut(s) 59, 91
Hin1II CATG 4 cut(s) 55, 295, 351, 461
Hin6I GCGC 2 cut(s) 57, 89
HinP1I GCGC 2 cut(s) 57, 89
HinfI GANTC 4 cut(s) 159, 218, 282, 417
HpaII CCGG 4 cut(s) 11, 29, 257, 308
HphI GGTGA 3 cut(s) 46, 55, 200
Hpy188III TCNNGA 2 cut(s) 43, 308
HpyAV CCTTC 3 cut(s) 11, 201, 363
HpyCH4V TGCA 3 cut(s) 102, 181, 393
Hsp92II CATG 4 cut(s) 55, 295, 351, 461
HspAI GCGC 2 cut(s) 57, 89
Kpn2I TCCGGA 1 cut(s) 307
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 2 cut(s) 275, 349
MaeI CTAG 1 cut(s) 493
MaeIII GTNAC 1 cut(s) 34
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 1 cut(s) 396
MhlI GDGCHC 3 cut(s) 10, 28, 120
MluCI AATT 1 cut(s) 236
MlyI GAGTC 1 cut(s) 411
MnlI CCTC 5 cut(s) 14, 25, 50, 58, 235
MroI TCCGGA 1 cut(s) 307
MspI CCGG 4 cut(s) 11, 29, 257, 308
MspR9I CCNGG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 94
MvnI CGCG 1 cut(s) 89
NcoI CCATGG 2 cut(s) 51, 291
NdeII GATC 1 cut(s) 190
NlaIII CATG 4 cut(s) 55, 295, 351, 461
NlaIV GGNNCC 2 cut(s) 9, 27
NmuCI GTSAC 1 cut(s) 34
NspV TTCGAA 1 cut(s) 233
PaeR7I CTCGAG 1 cut(s) 41
PfeI GAWTC 3 cut(s) 159, 218, 282
PflFI GACNNNGTC 1 cut(s) 143
PleI GAGTC 1 cut(s) 411
PpsI GAGTC 1 cut(s) 411
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 92
PspEI GGTNACC 1 cut(s) 34
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 9, 27
PspPI GGNCC 1 cut(s) 305
PsyI GACNNNGTC 1 cut(s) 143
SacI GAGCTC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 1 cut(s) 411
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 3 cut(s) 10, 28, 120
SetI ASST 6 cut(s) 36, 50, 75, 120, 187, 280
Sfr274I CTCGAG 1 cut(s) 41
SfuI TTCGAA 1 cut(s) 233
SinI GGWCC 1 cut(s) 305
SlaI CTCGAG 1 cut(s) 41
SmlI CTYRAG 2 cut(s) 41, 68
SmoI CTYRAG 2 cut(s) 41, 68
Sse9I AATT 1 cut(s) 236
SsiI CCGC 1 cut(s) 475
SspI AATATT 1 cut(s) 378
SspMI CTAG 1 cut(s) 493
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 2 cut(s) 51, 291
TaqI TCGA 3 cut(s) 42, 114, 233
TasI AATT 1 cut(s) 236
TfiI GAWTC 3 cut(s) 159, 218, 282
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 2 cut(s) 100, 163
TspRI CASTG 1 cut(s) 400
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 305
XapI RAATTY 1 cut(s) 236
XhoI CTCGAG 1 cut(s) 41
XspI CTAG 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.