AT2G38700
ERF Family

Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010940
Physical Location & Seq
Reverse (-)
16180503 .. 16184074
3572 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38700.1

Sequence Viewer

Length: 1239 bp
ATGGCGGAGGAGAAATGGGTGGTGATGGTGACGGCGCAGACTCCAACGAATATCGCCGTGATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTTCCCATTAATGATAGCATTAGCGTCACGCTTGATCCTGATCACCTCTGTACTCTCACCACCGTCGCTGTTAGTCCTTCCTTTGATCGAGATCGAATGTGGCTCAATGGCAAGGAAATCTCGCTTTCTGGAAGTAGGTACCAGAATTGCTTGAGGGAAATTCGAAGTCGTGCTGATGATGTAGAAGATAAAGAAAAGGGTATCAAGATTGCGAAGAAAGATTGGGAGAAGCTGCATCTGCACATTGCTTCTCATAACAACTTCCCTACTGCTGCTGGCTTAGCATCTTCTGCTGCTGGTTTTGCTTGCTTAGTTTTTGCTCTTGCCAAGTTGATGAATGTAAATGAAGATCCAAGCCAACTTTCTGCTATAGCAAGGCAAGGTTCAGGAAGTGCTTGCCGTAGTTTATTTGGGGGATTTGTCAAGTGGAATATGGGAAACAAAGAAGATGGAAGTGACAGTGTTGCAGTTCAACTGGTAGATGATAAGCACTGGGATGATCTTGTTATCATTATTGCTGTGGTTAGTTCACGACAGAAGGAAACAAGCAGCACCTCGGGAATGCGTGAGAGTGTTGAGACAAGTTTGCTTTTACAGCATAGAGCAAAGGAAGTTGTCCCAGTACGGATTTTGCAAATGGAAGAAGCTATAAAGAATCGAGATTTCACATCTTTTACAAAATTGACGTGTTCAGACAGTAATCAGTTTCATGCTGTTTGTATGGATACATCTCCACCCATATTCTACATGAATGACACCTCCCACAGGATAATCAGCTTAGTTGAAAAGTGGAACCGTTCTGCCGGTACACCAGAGATTGCTTATACATTTGATGCTGGCCCAAATGCAGTCATGATTGCAAGAAACAGGAAAGTAGCAGTTGAATTGCTGCAGGGGCTGCTCTACTGCTTCCCTCCTAAGCCTGACACAGACATGAAGAGTTACGTACTGGGGGATACATCGATAGTAAAAGAGGCAGGCTTGGAAGGAGAGCTTCCACAAGGAATTAAAGACAAAATTGGAAGTCAGGATCAAAAAGGTGAAGTGAGTTATTTTATATGCAGCAGACCTGGAAGAGGTCCTGTGGTGCTTCAAGACCAAACTCAAGCTCTTCTCCATCCTCAAACTGGCCTCCCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004163 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006066 GO:0006084 GO:0006139 GO:0006163 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006489 GO:0006490 GO:0006629 GO:0006637 GO:0006644 GO:0006694 GO:0006695 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008202 GO:0008203 GO:0008284 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009889 GO:0009987 GO:0016125 GO:0016126 GO:0016829 GO:0016830 GO:0016831 GO:0019216 GO:0019218 GO:0019222 GO:0019287 GO:0019538 GO:0019637 GO:0019693 GO:0030544 GO:0031072 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0034645 GO:0035383 GO:0036211 GO:0042127 GO:0042579 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045540 GO:0046165 GO:0046465 GO:0046483 GO:0046490 GO:0046890 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050810 GO:0051186 GO:0055086 GO:0062012 GO:0065007 GO:0070085 GO:0071704 GO:0072521 GO:0080090 GO:0090181 GO:0090407 GO:0106118 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902652 GO:1902653 GO:1902930
KEGG Pathways
Metabolic & Signaling
ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
GHMP_kinases_N

Protein Analysis

412

Amino Acids

45.59

Weight (kDa)

6.33

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MVD-like_N PF22700 15 - 188 3.6e-65 Diphosphomevalonate decarboxylase-like N-terminal domain
GHMP_kinases_N PF00288 105 - 163 8.7e-07 GHMP kinases N terminal domain
MDD_C PF18376 202 - 395 1.8e-66 Mevalonate 5-diphosphate decarboxylase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010940)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38700 AT3G54250
fragaria_vesca FvH4_7g05610 FvH4_7g05610
malus_domestica MD02G1256300.v1.1 MD07G1064100.v1.1
prunus_persica Prupe.2G078900_v2.0.a1
pyrus_communis pycom02g21690 pycom07g04970
rosa_chinensis RchiOBHm_Chr1g0332421
rosa_laevigata RLG00000029671
rosa_multiflora Rmu_sc0016943.1_g000003 Rmu_ssc0000161.1_g000007
rosa_roxburghii Rroxscaffold_4G00318190
rosa_rugosa Rorug01G0100700
rosa_samantha Rh1AG124800 Rh1BG095200 Rh1CG118900 Rh1DG129700
rosa_wichuraiana Rw1G010140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 234
AccB1I GGYRCC 1 cut(s) 234
AciI CCGC 1 cut(s) 5
AclWI GGATC 3 cut(s) 125, 440, 1134
AcsI RAATTY 1 cut(s) 255
AfaI GTAC 5 cut(s) 148, 236, 720, 904, 1044
AfiI CCNNNNNNNGG 3 cut(s) 861, 1172, 1223
AflIII ACRYGT 1 cut(s) 782
AgsI TTSAA 4 cut(s) 569, 881, 980, 1190
AjiI CACGTC 1 cut(s) 783
AjnI CCWGG 1 cut(s) 1165
AjuI GAANNNNNNNTTGG 2 cut(s) 442, 474
AluBI AGCT 5 cut(s) 328, 743, 873, 1090, 1205
AluI AGCT 5 cut(s) 328, 743, 873, 1090, 1205
Alw26I GTCTC 1 cut(s) 668
AlwI GGATC 3 cut(s) 125, 440, 1134
AlwNI CAGNNNCTG 1 cut(s) 994
Ama87I CYCGRG 1 cut(s) 652
AoxI GGCC 2 cut(s) 934, 1225
ApeKI GCWGC 7 cut(s) 328, 368, 389, 645, 985, 994, 1158
ApoI RAATTY 1 cut(s) 255
AseI ATTAAT 1 cut(s) 105
Asp718I GGTACC 1 cut(s) 234
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 935, 1175
AsuHPI GGTGA 5 cut(s) 34, 40, 131, 145, 1148
AsuII TTCGAA 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 652
AvaII GGWCC 1 cut(s) 1175
BanI GGYRCC 1 cut(s) 234
BbvI GCAGC 7 cut(s) 315, 355, 376, 657, 972, 981, 1170
BccI CCATC 3 cut(s) 19, 539, 1221
BceAI ACGGC 3 cut(s) 41, 48, 480
BciT130I CCWGG 1 cut(s) 1167
BciVI GTATCC 2 cut(s) 814, 1045
BclI TGATCA 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 668
BfmI CTRYAG 2 cut(s) 465, 986
BfuI GTATCC 2 cut(s) 814, 1045
BisI GCNGC 7 cut(s) 329, 369, 390, 646, 986, 995, 1159
BlpI GCTNAGC 1 cut(s) 376
BlsI GCNGC 7 cut(s) 330, 370, 391, 647, 987, 996, 1160
Bme1390I CCNGG 1 cut(s) 1167
Bme18I GGWCC 1 cut(s) 1175
BmeT110I CYCGRG 1 cut(s) 652
BmgBI CACGTC 1 cut(s) 783
BmgT120I GGNCC 2 cut(s) 935, 1175
BmiI GGNNCC 2 cut(s) 236, 890
BmrFI CCNGG 1 cut(s) 1167
BmrI ACTGGG 3 cut(s) 598, 710, 1055
BmsI GCATC 3 cut(s) 340, 389, 919
BmuI ACTGGG 3 cut(s) 598, 710, 1055
Bpu10I CCTNAGC 1 cut(s) 1014
Bpu1102I GCTNAGC 1 cut(s) 376
Bpu14I TTCGAA 1 cut(s) 259
BpuEI CTTGAG 2 cut(s) 268, 1185
Bsa29I ATCGAT 1 cut(s) 1058
BsaAI YACGTR 1 cut(s) 1042
BsaBI GATNNNNATC 2 cut(s) 135, 186
BsaJI CCNNGG 1 cut(s) 651
Bsc4I CCNNNNNNNGG 3 cut(s) 861, 1172, 1223
Bse118I RCCGGY 1 cut(s) 899
Bse1I ACTGG 5 cut(s) 576, 593, 716, 1050, 1228
Bse3DI GCAATG 1 cut(s) 339
Bse8I GATNNNNATC 2 cut(s) 135, 186
BseBI CCWGG 1 cut(s) 1167
BseCI ATCGAT 1 cut(s) 1058
BseDI CCNNGG 1 cut(s) 651
BseGI GGATG 2 cut(s) 598, 1213
BseJI GATNNNNATC 2 cut(s) 135, 186
BseLI CCNNNNNNNGG 3 cut(s) 861, 1172, 1223
BseMI GCAATG 1 cut(s) 339
BseNI ACTGG 5 cut(s) 576, 593, 716, 1050, 1228
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 7 cut(s) 315, 355, 376, 657, 972, 981, 1170
BsgI GTGCAG 1 cut(s) 320
BshFI GGCC 2 cut(s) 936, 1227
BshNI GGYRCC 1 cut(s) 234
BshVI ATCGAT 1 cut(s) 1058
BsiHKCI CYCGRG 1 cut(s) 652
BsiSI CCGG 1 cut(s) 900
BslFI GGGAC 1 cut(s) 698
BslI CCNNNNNNNGG 3 cut(s) 861, 1172, 1223
BsmAI GTCTC 1 cut(s) 668
BsmFI GGGAC 1 cut(s) 698
BsmI GAATGC 1 cut(s) 663
BsnI GGCC 2 cut(s) 936, 1227
BsoBI CYCGRG 1 cut(s) 652
Bsp119I TTCGAA 1 cut(s) 259
Bsp143I GATC 7 cut(s) 130, 136, 181, 187, 445, 595, 1126
Bsp1720I GCTNAGC 1 cut(s) 376
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 936, 1227
BspDI ATCGAT 1 cut(s) 1058
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 2 cut(s) 236, 890
BspMAI CTGCAG 1 cut(s) 990
BspPI GGATC 3 cut(s) 125, 440, 1134
BspQI GCTCTTC 1 cut(s) 1212
BspT104I TTCGAA 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 899
BsrI ACTGG 5 cut(s) 576, 593, 716, 1050, 1228
BssAI RCCGGY 1 cut(s) 899
BssECI CCNNGG 1 cut(s) 651
BssMI GATC 7 cut(s) 130, 136, 181, 187, 445, 595, 1126
Bst2UI CCWGG 1 cut(s) 1167
Bst4CI ACNGT 4 cut(s) 160, 557, 794, 893
Bst6I CTCTTC 3 cut(s) 1028, 1165, 1212
BstAPI GCANNNNNTGC 2 cut(s) 386, 994
BstBAI YACGTR 1 cut(s) 1042
BstBI TTCGAA 1 cut(s) 259
BstC8I GCNNGC 5 cut(s) 373, 403, 493, 934, 1075
BstDEI CTNAG 4 cut(s) 376, 406, 874, 1014
BstENI CCTNNNNNAGG 2 cut(s) 859, 1170
BstF5I GGATG 2 cut(s) 598, 1213
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 7 cut(s) 133, 139, 184, 190, 448, 598, 1129
BstMAI GTCTC 1 cut(s) 668
BstMBI GATC 7 cut(s) 130, 136, 181, 187, 445, 595, 1126
BstMWI GCNNNNNNNGC 7 cut(s) 334, 377, 386, 398, 691, 991, 994
BstNI CCWGG 1 cut(s) 1167
BstSCI CCNGG 1 cut(s) 1165
BstSFI CTRYAG 2 cut(s) 465, 986
BstSNI TACGTA 1 cut(s) 1042
BstV1I GCAGC 7 cut(s) 315, 355, 376, 657, 972, 981, 1170
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
Bsu15I ATCGAT 1 cut(s) 1058
BsuI GTATCC 2 cut(s) 814, 1045
BsuRI GGCC 2 cut(s) 936, 1227
BsuTUI ATCGAT 1 cut(s) 1058
BtrI CACGTC 1 cut(s) 783
BtsCI GGATG 2 cut(s) 598, 1213
BtsIMutI CAGTG 2 cut(s) 562, 586
Cac8I GCNNGC 5 cut(s) 373, 403, 493, 934, 1075
CaiI CAGNNNCTG 1 cut(s) 994
CciI TCATGA 1 cut(s) 948
CfoI GCGC 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 899
Cfr13I GGNCC 2 cut(s) 935, 1175
ClaI ATCGAT 1 cut(s) 1058
CseI GACGC 1 cut(s) 109
Csp6I GTAC 5 cut(s) 147, 235, 719, 903, 1043
CviAII CATG 4 cut(s) 806, 844, 949, 1030
CviQI GTAC 5 cut(s) 147, 235, 719, 903, 1043
DdeI CTNAG 4 cut(s) 376, 406, 874, 1014
DpnI GATC 7 cut(s) 132, 138, 183, 189, 447, 597, 1128
DpnII GATC 7 cut(s) 130, 136, 181, 187, 445, 595, 1126
Eam1104I CTCTTC 3 cut(s) 1028, 1165, 1212
EarI CTCTTC 3 cut(s) 1028, 1165, 1212
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 1042
Eco47I GGWCC 1 cut(s) 1175
Eco88I CYCGRG 1 cut(s) 652
EcoNI CCTNNNNNAGG 2 cut(s) 859, 1170
EcoO109I RGGNCCY 1 cut(s) 1175
EcoRII CCWGG 1 cut(s) 1165
FaeI CATG 4 cut(s) 809, 847, 952, 1033
FalI AAGNNNNNCTT 2 cut(s) 1074, 1106
FaqI GGGAC 1 cut(s) 698
FatI CATG 4 cut(s) 805, 843, 948, 1029
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 7 cut(s) 329, 369, 390, 646, 986, 995, 1159
FokI GGATG 2 cut(s) 605, 1200
Fsp4HI GCNGC 7 cut(s) 329, 369, 390, 646, 986, 995, 1159
GlaI GCGC 1 cut(s) 36
GluI GCNGC 7 cut(s) 329, 369, 390, 646, 986, 995, 1159
HaeIII GGCC 2 cut(s) 936, 1227
HapII CCGG 1 cut(s) 900
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 37
Hin1II CATG 4 cut(s) 809, 847, 952, 1033
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 3 cut(s) 40, 94, 751
HpaII CCGG 1 cut(s) 900
HphI GGTGA 5 cut(s) 34, 40, 131, 145, 1148
Hpy166II GTNNAC 2 cut(s) 626, 905
Hpy188I TCNGA 2 cut(s) 93, 790
Hpy8I GTNNAC 2 cut(s) 626, 905
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 3 cut(s) 183, 628, 1076
HpyCH4III ACNGT 4 cut(s) 160, 557, 794, 893
HpyCH4IV ACGT 2 cut(s) 782, 1041
HpyCH4V TGCA 8 cut(s) 331, 337, 563, 730, 944, 956, 988, 1158
HpyF10VI GCNNNNNNNGC 7 cut(s) 334, 377, 386, 398, 691, 991, 994
HpyF3I CTNAG 4 cut(s) 376, 406, 874, 1014
HpySE526I ACGT 2 cut(s) 782, 1041
Hsp92II CATG 4 cut(s) 809, 847, 952, 1033
HspAI GCGC 1 cut(s) 35
KpnI GGTACC 1 cut(s) 238
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 7 cut(s) 130, 136, 181, 187, 445, 595, 1126
LguI GCTCTTC 1 cut(s) 1212
Lsp1109I GCAGC 7 cut(s) 315, 355, 376, 657, 972, 981, 1170
LweI GCATC 3 cut(s) 340, 389, 919
MaeII ACGT 2 cut(s) 782, 1041
MaeIII GTNAC 4 cut(s) 28, 121, 551, 1037
MalI GATC 7 cut(s) 132, 138, 183, 189, 447, 597, 1128
MboI GATC 7 cut(s) 130, 136, 181, 187, 445, 595, 1126
MflI RGATCY 1 cut(s) 445
MluCI AATT 6 cut(s) 241, 255, 776, 980, 1101, 1113
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 68
MseI TTAA 3 cut(s) 63, 105, 1104
MslI CAYNNNNRTG 2 cut(s) 591, 1028
MspI CCGG 1 cut(s) 900
MspR9I CCNGG 1 cut(s) 1167
Mva1269I GAATGC 1 cut(s) 663
MvaI CCWGG 1 cut(s) 1167
MwoI GCNNNNNNNGC 7 cut(s) 334, 377, 386, 398, 691, 991, 994
NdeII GATC 7 cut(s) 130, 136, 181, 187, 445, 595, 1126
NlaIII CATG 4 cut(s) 809, 847, 952, 1033
NlaIV GGNNCC 2 cut(s) 236, 890
NmuCI GTSAC 3 cut(s) 28, 121, 551
NspV TTCGAA 1 cut(s) 259
PagI TCATGA 1 cut(s) 948
PciSI GCTCTTC 1 cut(s) 1212
PctI GAATGC 1 cut(s) 663
PfeI GAWTC 2 cut(s) 94, 751
PkrI GCNGC 7 cut(s) 330, 370, 391, 647, 987, 996, 1160
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Ppu21I YACGTR 1 cut(s) 1042
PpuMI RGGWCCY 1 cut(s) 1175
PshBI ATTAAT 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 1175
Psp6I CCWGG 1 cut(s) 1165
PspGI CCWGG 1 cut(s) 1165
PspN4I GGNNCC 2 cut(s) 236, 890
PspPI GGNCC 2 cut(s) 935, 1175
PspPPI RGGWCCY 1 cut(s) 1175
PstI CTGCAG 1 cut(s) 990
PstNI CAGNNNCTG 1 cut(s) 994
PsuI RGATCY 1 cut(s) 445
RsaI GTAC 5 cut(s) 148, 236, 720, 904, 1044
RsaNI GTAC 5 cut(s) 147, 235, 719, 903, 1043
RseI CAYNNNNRTG 2 cut(s) 591, 1028
SapI GCTCTTC 1 cut(s) 1212
SaqAI TTAA 3 cut(s) 63, 105, 1104
SatI GCNGC 7 cut(s) 329, 369, 390, 646, 986, 995, 1159
Sau3AI GATC 7 cut(s) 130, 136, 181, 187, 445, 595, 1126
Sau96I GGNCC 2 cut(s) 935, 1175
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 1167
SfaNI GCATC 3 cut(s) 340, 389, 919
SfcI CTRYAG 2 cut(s) 465, 986
SfuI TTCGAA 1 cut(s) 259
SinI GGWCC 1 cut(s) 1175
SmiMI CAYNNNNRTG 2 cut(s) 591, 1028
SmlI CTYRAG 2 cut(s) 247, 1200
SmoI CTYRAG 2 cut(s) 247, 1200
SnaBI TACGTA 1 cut(s) 1042
Sse9I AATT 6 cut(s) 241, 255, 776, 980, 1101, 1113
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 1165
TaaI ACNGT 4 cut(s) 160, 557, 794, 893
TaiI ACGT 2 cut(s) 785, 1044
TaqI TCGA 5 cut(s) 184, 190, 259, 754, 1058
TasI AATT 6 cut(s) 241, 255, 776, 980, 1101, 1113
TatI WGTACW 1 cut(s) 146
TfiI GAWTC 2 cut(s) 94, 751
Tru1I TTAA 3 cut(s) 63, 105, 1104
Tru9I TTAA 3 cut(s) 63, 105, 1104
TscAI CASTG 2 cut(s) 562, 593
TseFI GTSAC 3 cut(s) 28, 121, 551
TseI GCWGC 7 cut(s) 328, 368, 389, 645, 985, 994, 1158
Tsp45I GTSAC 3 cut(s) 28, 121, 551
TspDTI ATGAA 5 cut(s) 446, 456, 794, 860, 1046
TspGWI ACGGA 1 cut(s) 736
TspRI CASTG 2 cut(s) 562, 593
VpaK11BI GGWCC 1 cut(s) 1175
VspI ATTAAT 1 cut(s) 105
XagI CCTNNNNNAGG 2 cut(s) 859, 1170
XapI RAATTY 1 cut(s) 255
XcmI CCANNNNNNNNNTGG 1 cut(s) 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.