Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G38700 AT3G54250 |
| fragaria_vesca | FvH4_7g05610 FvH4_7g05610 |
| malus_domestica | MD02G1256300.v1.1 MD07G1064100.v1.1 |
| prunus_persica | Prupe.2G078900_v2.0.a1 |
| pyrus_communis | pycom02g21690 pycom07g04970 |
| rosa_chinensis | RchiOBHm_Chr1g0332421 |
| rosa_laevigata | RLG00000029671 |
| rosa_multiflora | Rmu_sc0016943.1_g000003 Rmu_ssc0000161.1_g000007 |
| rosa_roxburghii | Rroxscaffold_4G00318190 |
| rosa_rugosa | Rorug01G0100700 |
| rosa_samantha | Rh1AG124800 Rh1BG095200 Rh1CG118900 Rh1DG129700 |
| rosa_wichuraiana | Rw1G010140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 234 |
| AccB1I | GGYRCC | 1 cut(s) | 234 |
| AccIII | TCCGGA | 1 cut(s) | 653 |
| AciI | CCGC | 1 cut(s) | 56 |
| AclWI | GGATC | 7 cut(s) | 125, 195, 305, 440, 1147, 1155, 1229 |
| AcuI | CTGAAG | 2 cut(s) | 369, 918 |
| AfaI | GTAC | 5 cut(s) | 236, 649, 787, 948, 1001 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1193, 1244 |
| AflIII | ACRYGT | 1 cut(s) | 782 |
| AgsI | TTSAA | 5 cut(s) | 281, 331, 569, 881, 1059 |
| AjnI | CCWGG | 3 cut(s) | 470, 987, 1186 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 442, 474 |
| AluBI | AGCT | 3 cut(s) | 389, 743, 873 |
| AluI | AGCT | 3 cut(s) | 389, 743, 873 |
| Alw26I | GTCTC | 2 cut(s) | 668, 750 |
| AlwI | GGATC | 7 cut(s) | 125, 195, 305, 440, 1147, 1155, 1229 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 392, 1025 |
| Aor13HI | TCCGGA | 1 cut(s) | 653 |
| AoxI | GGCC | 1 cut(s) | 1246 |
| ApeKI | GCWGC | 2 cut(s) | 368, 389 |
| Asp718I | GGTACC | 1 cut(s) | 234 |
| AspLEI | GCGC | 1 cut(s) | 37 |
| AspS9I | GGNCC | 2 cut(s) | 935, 1196 |
| AsuHPI | GGTGA | 5 cut(s) | 40, 70, 145, 284, 631 |
| AvaII | GGWCC | 2 cut(s) | 935, 1196 |
| BanI | GGYRCC | 1 cut(s) | 234 |
| BbsI | GAAGAC | 1 cut(s) | 288 |
| BbvI | GCAGC | 2 cut(s) | 355, 376 |
| BccI | CCATC | 4 cut(s) | 462, 539, 1076, 1208 |
| BceAI | ACGGC | 3 cut(s) | 48, 149, 644 |
| BciT130I | CCWGG | 3 cut(s) | 472, 989, 1188 |
| BciVI | GTATCC | 1 cut(s) | 814 |
| BclI | TGATCA | 1 cut(s) | 136 |
| BcoDI | GTCTC | 2 cut(s) | 668, 750 |
| BfaI | CTAG | 2 cut(s) | 407, 1182 |
| BfuI | GTATCC | 1 cut(s) | 814 |
| BisI | GCNGC | 2 cut(s) | 369, 390 |
| BlpI | GCTNAGC | 1 cut(s) | 376 |
| BlsI | GCNGC | 2 cut(s) | 370, 391 |
| Bme1390I | CCNGG | 3 cut(s) | 472, 989, 1188 |
| Bme18I | GGWCC | 2 cut(s) | 935, 1196 |
| BmgT120I | GGNCC | 2 cut(s) | 935, 1196 |
| BmiI | GGNNCC | 3 cut(s) | 236, 890, 1198 |
| BmrFI | CCNGG | 3 cut(s) | 472, 989, 1188 |
| BmsI | GCATC | 3 cut(s) | 389, 773, 919 |
| BpiI | GAAGAC | 1 cut(s) | 288 |
| BpmI | CTGGAG | 1 cut(s) | 971 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 376 |
| BpuEI | CTTGAG | 1 cut(s) | 1206 |
| BsaAI | YACGTR | 1 cut(s) | 1042 |
| BsaBI | GATNNNNATC | 4 cut(s) | 135, 186, 444, 795 |
| BsaJI | CCNNGG | 1 cut(s) | 988 |
| BsaWI | WCCGGW | 1 cut(s) | 653 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1193, 1244 |
| Bse1I | ACTGG | 1 cut(s) | 576 |
| Bse3DI | GCAATG | 2 cut(s) | 51, 609 |
| Bse8I | GATNNNNATC | 4 cut(s) | 135, 186, 444, 795 |
| BseAI | TCCGGA | 1 cut(s) | 653 |
| BseBI | CCWGG | 3 cut(s) | 472, 989, 1188 |
| BseDI | CCNNGG | 1 cut(s) | 988 |
| BseGI | GGATG | 1 cut(s) | 598 |
| BseJI | GATNNNNATC | 4 cut(s) | 135, 186, 444, 795 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1193, 1244 |
| BseMI | GCAATG | 2 cut(s) | 51, 609 |
| BseMII | CTCAG | 1 cut(s) | 1157 |
| BseNI | ACTGG | 1 cut(s) | 576 |
| BseXI | GCAGC | 2 cut(s) | 355, 376 |
| BsgI | GTGCAG | 2 cut(s) | 130, 1162 |
| BshFI | GGCC | 1 cut(s) | 1248 |
| BshNI | GGYRCC | 1 cut(s) | 234 |
| BsiSI | CCGG | 2 cut(s) | 496, 654 |
| BslFI | GGGAC | 2 cut(s) | 916, 1182 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1193, 1244 |
| BsmAI | GTCTC | 2 cut(s) | 668, 750 |
| BsmFI | GGGAC | 2 cut(s) | 916, 1182 |
| BsmI | GAATGC | 1 cut(s) | 663 |
| BsnI | GGCC | 1 cut(s) | 1248 |
| Bsp13I | TCCGGA | 1 cut(s) | 653 |
| Bsp1407I | TGTACA | 1 cut(s) | 785 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 376 |
| BspACI | CCGC | 1 cut(s) | 56 |
| BspANI | GGCC | 1 cut(s) | 1248 |
| BspCNI | CTCAG | 1 cut(s) | 1156 |
| BspEI | TCCGGA | 1 cut(s) | 653 |
| BspLI | GGNNCC | 3 cut(s) | 236, 890, 1198 |
| BspPI | GGATC | 7 cut(s) | 125, 195, 305, 440, 1147, 1155, 1229 |
| BspT107I | GGYRCC | 1 cut(s) | 234 |
| BsrDI | GCAATG | 2 cut(s) | 51, 609 |
| BsrGI | TGTACA | 1 cut(s) | 785 |
| BsrI | ACTGG | 1 cut(s) | 576 |
| BssECI | CCNNGG | 1 cut(s) | 988 |
| Bst2UI | CCWGG | 3 cut(s) | 472, 989, 1188 |
| Bst4CI | ACNGT | 3 cut(s) | 151, 160, 893 |
| Bst6I | CTCTTC | 1 cut(s) | 1028 |
| BstAUI | TGTACA | 1 cut(s) | 785 |
| BstBAI | YACGTR | 1 cut(s) | 1042 |
| BstC8I | GCNNGC | 3 cut(s) | 373, 493, 958 |
| BstDEI | CTNAG | 5 cut(s) | 376, 874, 1014, 1143, 1254 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1191, 1242 |
| BstF5I | GGATG | 1 cut(s) | 598 |
| BstHHI | GCGC | 1 cut(s) | 37 |
| BstMAI | GTCTC | 2 cut(s) | 668, 750 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 377, 386, 398, 691, 991 |
| BstNI | CCWGG | 3 cut(s) | 472, 989, 1188 |
| BstNSI | RCATGY | 1 cut(s) | 786 |
| BstSCI | CCNGG | 3 cut(s) | 470, 987, 1186 |
| BstSNI | TACGTA | 1 cut(s) | 1042 |
| BstV1I | GCAGC | 2 cut(s) | 355, 376 |
| BstV2I | GAAGAC | 1 cut(s) | 288 |
| BstX2I | RGATCY | 2 cut(s) | 445, 1139 |
| BstYI | RGATCY | 2 cut(s) | 445, 1139 |
| BsuI | GTATCC | 1 cut(s) | 814 |
| BsuRI | GGCC | 1 cut(s) | 1248 |
| BtsCI | GGATG | 1 cut(s) | 598 |
| BtsIMutI | CAGTG | 2 cut(s) | 156, 1023 |
| Cac8I | GCNNGC | 3 cut(s) | 373, 493, 958 |
| CaiI | CAGNNNCTG | 2 cut(s) | 392, 1025 |
| CfoI | GCGC | 1 cut(s) | 37 |
| Cfr13I | GGNCC | 2 cut(s) | 935, 1196 |
| Csp6I | GTAC | 5 cut(s) | 235, 648, 786, 947, 1000 |
| CviAII | CATG | 5 cut(s) | 25, 286, 783, 806, 844 |
| CviQI | GTAC | 5 cut(s) | 235, 648, 786, 947, 1000 |
| DdeI | CTNAG | 5 cut(s) | 376, 874, 1014, 1143, 1254 |
| Eam1104I | CTCTTC | 1 cut(s) | 1028 |
| EarI | CTCTTC | 1 cut(s) | 1028 |
| Eco105I | TACGTA | 1 cut(s) | 1042 |
| Eco147I | AGGCCT | 1 cut(s) | 1248 |
| Eco47I | GGWCC | 2 cut(s) | 935, 1196 |
| Eco57I | CTGAAG | 2 cut(s) | 369, 918 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1191, 1242 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1196 |
| EcoRII | CCWGG | 3 cut(s) | 470, 987, 1186 |
| FaeI | CATG | 5 cut(s) | 28, 289, 786, 809, 847 |
| FaqI | GGGAC | 2 cut(s) | 916, 1182 |
| FatI | CATG | 5 cut(s) | 24, 285, 782, 805, 843 |
| FbaI | TGATCA | 1 cut(s) | 136 |
| Fnu4HI | GCNGC | 2 cut(s) | 369, 390 |
| FokI | GGATG | 1 cut(s) | 605 |
| Fsp4HI | GCNGC | 2 cut(s) | 369, 390 |
| FspBI | CTAG | 2 cut(s) | 407, 1182 |
| GlaI | GCGC | 1 cut(s) | 36 |
| GluI | GCNGC | 2 cut(s) | 369, 390 |
| GsuI | CTGGAG | 1 cut(s) | 971 |
| HaeIII | GGCC | 1 cut(s) | 1248 |
| HapII | CCGG | 2 cut(s) | 496, 654 |
| HhaI | GCGC | 1 cut(s) | 37 |
| Hin1II | CATG | 5 cut(s) | 28, 289, 786, 809, 847 |
| Hin6I | GCGC | 1 cut(s) | 35 |
| HinP1I | GCGC | 1 cut(s) | 35 |
| HincII | GTYRAC | 1 cut(s) | 106 |
| HindII | GTYRAC | 1 cut(s) | 106 |
| HinfI | GANTC | 3 cut(s) | 94, 331, 1102 |
| HpaI | GTTAAC | 1 cut(s) | 106 |
| HpaII | CCGG | 2 cut(s) | 496, 654 |
| HphI | GGTGA | 5 cut(s) | 40, 70, 145, 284, 631 |
| Hpy166II | GTNNAC | 4 cut(s) | 106, 525, 626, 771 |
| Hpy188I | TCNGA | 4 cut(s) | 45, 93, 898, 1021 |
| Hpy8I | GTNNAC | 4 cut(s) | 106, 525, 626, 771 |
| Hpy99I | CGWCG | 2 cut(s) | 10, 49 |
| HpyAV | CCTTC | 4 cut(s) | 628, 893, 1238, 1259 |
| HpyCH4III | ACNGT | 3 cut(s) | 151, 160, 893 |
| HpyCH4IV | ACGT | 1 cut(s) | 1041 |
| HpyCH4V | TGCA | 9 cut(s) | 147, 422, 464, 563, 730, 764, 956, 1108, 1179 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 377, 386, 398, 691, 991 |
| HpyF3I | CTNAG | 5 cut(s) | 376, 874, 1014, 1143, 1254 |
| HpySE526I | ACGT | 1 cut(s) | 1041 |
| Hsp92II | CATG | 5 cut(s) | 28, 289, 786, 809, 847 |
| HspAI | GCGC | 1 cut(s) | 35 |
| Kpn2I | TCCGGA | 1 cut(s) | 653 |
| KpnI | GGTACC | 1 cut(s) | 238 |
| Ksp22I | TGATCA | 1 cut(s) | 136 |
| KspAI | GTTAAC | 1 cut(s) | 106 |
| LmnI | GCTCC | 2 cut(s) | 990, 1085 |
| Lsp1109I | GCAGC | 2 cut(s) | 355, 376 |
| LweI | GCATC | 3 cut(s) | 389, 773, 919 |
| MaeI | CTAG | 2 cut(s) | 407, 1182 |
| MaeII | ACGT | 1 cut(s) | 1041 |
| MaeIII | GTNAC | 5 cut(s) | 28, 121, 151, 551, 1037 |
| MboII | GAAGA | 6 cut(s) | 293, 322, 375, 455, 554, 1045 |
| MfeI | CAATTG | 2 cut(s) | 776, 980 |
| MflI | RGATCY | 2 cut(s) | 445, 1139 |
| MluCI | AATT | 8 cut(s) | 241, 326, 776, 867, 980, 1054, 1059, 1122 |
| MmeI | TCCRAC | 1 cut(s) | 68 |
| MnlI | CCTC | 6 cut(s) | 79, 243, 254, 661, 730, 1122 |
| MroI | TCCGGA | 1 cut(s) | 653 |
| MseI | TTAA | 3 cut(s) | 63, 105, 1125 |
| MslI | CAYNNNNRTG | 4 cut(s) | 56, 591, 614, 1028 |
| MspA1I | CMGCKG | 1 cut(s) | 389 |
| MspI | CCGG | 2 cut(s) | 496, 654 |
| MspR9I | CCNGG | 3 cut(s) | 472, 989, 1188 |
| MunI | CAATTG | 2 cut(s) | 776, 980 |
| Mva1269I | GAATGC | 1 cut(s) | 663 |
| MvaI | CCWGG | 3 cut(s) | 472, 989, 1188 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 377, 386, 398, 691, 991 |
| NlaIII | CATG | 5 cut(s) | 28, 289, 786, 809, 847 |
| NlaIV | GGNNCC | 3 cut(s) | 236, 890, 1198 |
| NmuCI | GTSAC | 3 cut(s) | 28, 151, 551 |
| NspI | RCATGY | 1 cut(s) | 786 |
| PceI | AGGCCT | 1 cut(s) | 1248 |
| PciI | ACATGT | 1 cut(s) | 782 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1047, 1209 |
| PctI | GAATGC | 1 cut(s) | 663 |
| PfeI | GAWTC | 3 cut(s) | 94, 331, 1102 |
| PkrI | GCNGC | 2 cut(s) | 370, 391 |
| Ppu21I | YACGTR | 1 cut(s) | 1042 |
| PpuMI | RGGWCCY | 1 cut(s) | 1196 |
| PscI | ACATGT | 1 cut(s) | 782 |
| Psp5II | RGGWCCY | 1 cut(s) | 1196 |
| Psp6I | CCWGG | 3 cut(s) | 470, 987, 1186 |
| PspGI | CCWGG | 3 cut(s) | 470, 987, 1186 |
| PspN4I | GGNNCC | 3 cut(s) | 236, 890, 1198 |
| PspPI | GGNCC | 2 cut(s) | 935, 1196 |
| PspPPI | RGGWCCY | 1 cut(s) | 1196 |
| PstNI | CAGNNNCTG | 2 cut(s) | 392, 1025 |
| PsuI | RGATCY | 2 cut(s) | 445, 1139 |
| PvuII | CAGCTG | 1 cut(s) | 389 |
| RsaI | GTAC | 5 cut(s) | 236, 649, 787, 948, 1001 |
| RsaNI | GTAC | 5 cut(s) | 235, 648, 786, 947, 1000 |
| RseI | CAYNNNNRTG | 4 cut(s) | 56, 591, 614, 1028 |
| SaqAI | TTAA | 3 cut(s) | 63, 105, 1125 |
| SatI | GCNGC | 2 cut(s) | 369, 390 |
| Sau96I | GGNCC | 2 cut(s) | 935, 1196 |
| ScrFI | CCNGG | 3 cut(s) | 472, 989, 1188 |
| SfaNI | GCATC | 3 cut(s) | 389, 773, 919 |
| SinI | GGWCC | 2 cut(s) | 935, 1196 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 56, 591, 614, 1028 |
| SmlI | CTYRAG | 1 cut(s) | 1221 |
| SmoI | CTYRAG | 1 cut(s) | 1221 |
| SnaBI | TACGTA | 1 cut(s) | 1042 |
| Sse9I | AATT | 8 cut(s) | 241, 326, 776, 867, 980, 1054, 1059, 1122 |
| SseBI | AGGCCT | 1 cut(s) | 1248 |
| SsiI | CCGC | 1 cut(s) | 56 |
| SspMI | CTAG | 2 cut(s) | 407, 1182 |
| StuI | AGGCCT | 1 cut(s) | 1248 |
| StyD4I | CCNGG | 3 cut(s) | 470, 987, 1186 |
| TaaI | ACNGT | 3 cut(s) | 151, 160, 893 |
| TaiI | ACGT | 1 cut(s) | 1044 |
| TaqI | TCGA | 3 cut(s) | 190, 754, 1233 |
| TasI | AATT | 8 cut(s) | 241, 326, 776, 867, 980, 1054, 1059, 1122 |
| TatI | WGTACW | 3 cut(s) | 785, 946, 999 |
| TfiI | GAWTC | 3 cut(s) | 94, 331, 1102 |
| Tru1I | TTAA | 3 cut(s) | 63, 105, 1125 |
| Tru9I | TTAA | 3 cut(s) | 63, 105, 1125 |
| TscAI | CASTG | 2 cut(s) | 163, 1030 |
| TseFI | GTSAC | 3 cut(s) | 28, 151, 551 |
| TseI | GCWGC | 2 cut(s) | 368, 389 |
| Tsp45I | GTSAC | 3 cut(s) | 28, 151, 551 |
| TspDTI | ATGAA | 6 cut(s) | 13, 446, 456, 794, 860, 1046 |
| TspGWI | ACGGA | 2 cut(s) | 23, 736 |
| TspRI | CASTG | 2 cut(s) | 163, 1030 |
| VpaK11BI | GGWCC | 2 cut(s) | 935, 1196 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1191, 1242 |
| XceI | RCATGY | 1 cut(s) | 786 |
| XspI | CTAG | 2 cut(s) | 407, 1182 |