Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020256

Physical Location & Seq

Genomic Coordinates Forward (+)

16303295 .. 16305633

Gene Structure 2339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAGCACCACCACCAGCATCACCGTCACCACCAACGCGACGACGGAGAAGACGATCGTCAATCCTTTGGAGTACCACCGCCACACGTCGATGCTCCGCCACAACCTCATGGTCTTTACCAGTCACAGCCTCATTTTGATCCTTACGCGCCTACTCCTCAAGCTCCGGCGCCTTACCGATCAGAAACTCAATTCGAACCCCACGCGCCTCCGCCTTACCGATCAGAGCCTTACTTTGAAACTCCGGCACCACCGCCTTCATTTGGTCATGTGAGTCATGTTGGTCACCAATCACCCAACGAATCTTACCCACCGGAACACCACCGTTACGGAGGTTATCAACAGCCGTCTAATTCCTTACTGGAAAGTCATGGAGATCACAGTGGAGTCACGCACGTGGCTCACCATAGCTCAAATCAGCCCCAATCGTCTTCTGGTGTCTACCACAAGCCTGATGAGAATCGTCTACCTGATAATCTTGCTGGACTCGCCGGAAGAGCAACGGTGAAGGTGTATTCCAAGGCGGAGCCTAACTATAATTTGACGATCAGAGATGGTAAGGTTATTCTCGCCCCAGCGGATCCATCTGATGAAGCACAGCATTGGTACAAAGACGAGAAGTATAGTACTAAAGTGAAGGACGCAGACGGTCATCCTTGTTTTGCTCTTGTAAACAAAGCTACTGGTGAAGCAATGAAGCATTCTGTGGGAGCTACTCATCCCGTGCATCTGATTCGATATGTGCCTGATAAGCTTGACGAGTCAGTACTATGGACAGAGAGCAAGGATTTTGGCGATGGATATCGCACAATAAGAATGGTAAACAATACGAGGCTAAACGTGGATGCATATCATGGTGACAGCAAATCTGGTGGTGTACGTGATGGCACGACTATCGTCCTCTGGGACTGGAACAAAGGCGACAACCAGCTCTGGAAGATCTTTCCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010118 GO:0030246 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0090332 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

35.65

Weight (kDa)

6.19

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39050
malus_domestica	MD12G1000900.v1.1 MD14G1001100.v1.1
prunus_persica	Prupe.7G001300_v2.0.a1 Prupe.7G001300_v2.0.a1
pyrus_communis	pycom49g00060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	169, 247
AccI	GTMKAC	2 cut(s)	441, 466
AccII	CGCG	3 cut(s)	39, 149, 206
AciI	CCGC	6 cut(s)	80, 98, 212, 254, 524, 578
AclWI	GGATC	3 cut(s)	134, 575, 588
AcvI	CACGTG	1 cut(s)	397
AcyI	GRCGYC	1 cut(s)	170
AfaI	GTAC	5 cut(s)	75, 608, 628, 768, 879
AfiI	CCNNNNNNNGG	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	239
AjiI	CACGTC	1 cut(s)	88
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	6 cut(s)	164, 411, 680, 713, 754, 931
AluI	AGCT	6 cut(s)	164, 411, 680, 713, 754, 931
Alw21I	GWGCWC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	134, 575, 588
AspLEI	GCGC	3 cut(s)	151, 172, 208
AsuHPI	GGTGA	8 cut(s)	14, 20, 278, 285, 395, 517, 698, 869
AsuII	TTCGAA	1 cut(s)	195
BamHI	GGATCC	1 cut(s)	580
BanI	GGYRCC	2 cut(s)	169, 247
BbrPI	CACGTG	1 cut(s)	397
BbsI	GAAGAC	2 cut(s)	57, 423
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	4 cut(s)	548, 592, 791, 878
BceAI	ACGGC	1 cut(s)	331
BcgI	CGANNNNNNTGC	4 cut(s)	716, 750, 877, 911
BfoI	RGCGCY	1 cut(s)	173
BglII	AGATCT	1 cut(s)	939
BmcAI	AGTACT	2 cut(s)	628, 768
BmgBI	CACGTC	1 cut(s)	88
BmiI	GGNNCC	4 cut(s)	171, 249, 528, 582
BmsI	GCATC	4 cut(s)	28, 82, 736, 835
BoxI	GACNNNNGTC	2 cut(s)	57, 896
BpiI	GAAGAC	2 cut(s)	57, 423
Bpu14I	TTCGAA	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	144
BsaAI	YACGTR	2 cut(s)	397, 881
BsaBI	GATNNNNATC	3 cut(s)	459, 801, 849
BsaHI	GRCGYC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	519
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	4 cut(s)	121, 366, 688, 914
Bse3DI	GCAATG	1 cut(s)	699
Bse8I	GATNNNNATC	3 cut(s)	459, 801, 849
BseDI	CCNNGG	1 cut(s)	519
BseGI	GGATG	3 cut(s)	652, 718, 850
BseJI	GATNNNNATC	3 cut(s)	459, 801, 849
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	699
BseNI	ACTGG	4 cut(s)	121, 366, 688, 914
BseRI	GAGGAG	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	574
Bsh1236I	CGCG	3 cut(s)	39, 149, 206
Bsh1285I	CGRYCG	1 cut(s)	58
BshNI	GGYRCC	2 cut(s)	169, 247
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	4 cut(s)	167, 245, 314, 492
BslFI	GGGAC	1 cut(s)	920
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	920
BsmI	GAATGC	1 cut(s)	700
Bsp119I	TTCGAA	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	8 cut(s)	55, 139, 179, 221, 376, 546, 580, 939
BspACI	CCGC	6 cut(s)	80, 98, 212, 254, 524, 578
BspFNI	CGCG	3 cut(s)	39, 149, 206
BspLI	GGNNCC	4 cut(s)	171, 249, 528, 582
BspPI	GGATC	3 cut(s)	134, 575, 588
BspQI	GCTCTTC	1 cut(s)	490
BspT104I	TTCGAA	1 cut(s)	195
BspT107I	GGYRCC	2 cut(s)	169, 247
BsrDI	GCAATG	1 cut(s)	699
BsrI	ACTGG	4 cut(s)	121, 366, 688, 914
BssECI	CCNNGG	1 cut(s)	519
BssMI	GATC	8 cut(s)	55, 139, 179, 221, 376, 546, 580, 939
BssNI	GRCGYC	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	519
Bst4CI	ACNGT	5 cut(s)	26, 326, 383, 505, 650
Bst6I	CTCTTC	1 cut(s)	490
BstACI	GRCGYC	1 cut(s)	170
BstBAI	YACGTR	2 cut(s)	397, 881
BstBI	TTCGAA	1 cut(s)	195
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	3 cut(s)	652, 718, 850
BstFNI	CGCG	3 cut(s)	39, 149, 206
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	3 cut(s)	151, 172, 208
BstKTI	GATC	8 cut(s)	58, 142, 182, 224, 379, 549, 583, 942
BstMBI	GATC	8 cut(s)	55, 139, 179, 221, 376, 546, 580, 939
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 497, 751
BstPAI	GACNNNNGTC	2 cut(s)	57, 896
BstPI	GGTNACC	1 cut(s)	284
BstUI	CGCG	3 cut(s)	39, 149, 206
BstV2I	GAAGAC	2 cut(s)	57, 423
BstX2I	RGATCY	2 cut(s)	580, 939
BstYI	RGATCY	2 cut(s)	580, 939
BtgZI	GCGATG	1 cut(s)	810
BtrI	CACGTC	1 cut(s)	88
BtsCI	GGATG	3 cut(s)	652, 718, 850
BtsIMutI	CAGTG	1 cut(s)	388
CfoI	GCGC	3 cut(s)	151, 172, 208
CseI	GACGC	1 cut(s)	650
Csp6I	GTAC	5 cut(s)	74, 607, 627, 767, 878
CspCI	CAANNNNNGTGG	2 cut(s)	853, 888
CviAII	CATG	5 cut(s)	110, 269, 278, 371, 854
CviQI	GTAC	5 cut(s)	74, 607, 627, 767, 878
DinI	GGCGCC	1 cut(s)	171
DpnI	GATC	8 cut(s)	57, 141, 181, 223, 378, 548, 582, 941
DpnII	GATC	8 cut(s)	55, 139, 179, 221, 376, 546, 580, 939
Eam1104I	CTCTTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	490
EciI	GGCGGA	3 cut(s)	87, 201, 539
Eco130I	CCWWGG	1 cut(s)	519
Eco32I	GATATC	1 cut(s)	803
Eco72I	CACGTG	1 cut(s)	397
Eco91I	GGTNACC	1 cut(s)	284
EcoO65I	GGTNACC	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	803
EcoT14I	CCWWGG	1 cut(s)	519
EcoT22I	ATGCAT	1 cut(s)	850
EgeI	GGCGCC	1 cut(s)	171
EheI	GGCGCC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	519
FaeI	CATG	5 cut(s)	113, 272, 281, 374, 857
FaqI	GGGAC	1 cut(s)	920
FatI	CATG	5 cut(s)	109, 268, 277, 370, 853
FblI	GTMKAC	2 cut(s)	441, 466
FokI	GGATG	3 cut(s)	639, 705, 857
GlaI	GCGC	3 cut(s)	150, 171, 207
GsaI	CCCAGC	1 cut(s)	578
HaeII	RGCGCY	1 cut(s)	173
HapII	CCGG	4 cut(s)	167, 245, 314, 492
HgaI	GACGC	1 cut(s)	650
HhaI	GCGC	3 cut(s)	151, 172, 208
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	5 cut(s)	113, 272, 281, 374, 857
Hin6I	GCGC	3 cut(s)	149, 170, 206
HinP1I	GCGC	3 cut(s)	149, 170, 206
HindIII	AAGCTT	1 cut(s)	752
HinfI	GANTC	7 cut(s)	274, 302, 387, 460, 486, 733, 761
HpaII	CCGG	4 cut(s)	167, 245, 314, 492
HphI	GGTGA	8 cut(s)	14, 20, 278, 285, 395, 517, 698, 869
Hpy166II	GTNNAC	5 cut(s)	442, 467, 673, 823, 878
Hpy188I	TCNGA	6 cut(s)	184, 226, 551, 589, 732, 953
Hpy188III	TCNNGA	1 cut(s)	934
Hpy8I	GTNNAC	5 cut(s)	442, 467, 673, 823, 878
Hpy99I	CGWCG	3 cut(s)	44, 47, 92
HpyAV	CCTTC	3 cut(s)	267, 502, 631
HpyCH4III	ACNGT	5 cut(s)	26, 326, 383, 505, 650
HpyCH4IV	ACGT	4 cut(s)	87, 396, 840, 880
HpyCH4V	TGCA	2 cut(s)	727, 848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 497, 751
HpySE526I	ACGT	4 cut(s)	87, 396, 840, 880
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	5 cut(s)	113, 272, 281, 374, 857
HspAI	GCGC	3 cut(s)	149, 170, 206
KasI	GGCGCC	1 cut(s)	169
Kzo9I	GATC	8 cut(s)	55, 139, 179, 221, 376, 546, 580, 939
LguI	GCTCTTC	1 cut(s)	490
LmnI	GCTCC	5 cut(s)	4, 100, 169, 526, 710
LweI	GCATC	4 cut(s)	28, 82, 736, 835
MaeII	ACGT	4 cut(s)	87, 396, 840, 880
MaeIII	GTNAC	6 cut(s)	26, 123, 284, 326, 388, 857
MalI	GATC	8 cut(s)	57, 141, 181, 223, 378, 548, 582, 941
MboI	GATC	8 cut(s)	55, 139, 179, 221, 376, 546, 580, 939
MboII	GAAGA	4 cut(s)	62, 423, 507, 949
MflI	RGATCY	2 cut(s)	580, 939
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	3 cut(s)	191, 352, 538
Mly113I	GGCGCC	1 cut(s)	170
MlyI	GAGTC	4 cut(s)	283, 396, 480, 770
MnlI	CCTC	7 cut(s)	117, 141, 168, 219, 326, 825, 911
Mph1103I	ATGCAT	1 cut(s)	850
MslI	CAYNNNNRTG	2 cut(s)	90, 395
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	4 cut(s)	167, 245, 314, 492
Mva1269I	GAATGC	1 cut(s)	700
MvnI	CGCG	3 cut(s)	39, 149, 206
MwoI	GCNNNNNNNGC	3 cut(s)	488, 497, 751
NarI	GGCGCC	1 cut(s)	170
NdeII	GATC	8 cut(s)	55, 139, 179, 221, 376, 546, 580, 939
NlaIII	CATG	5 cut(s)	113, 272, 281, 374, 857
NlaIV	GGNNCC	4 cut(s)	171, 249, 528, 582
NmuCI	GTSAC	5 cut(s)	26, 123, 284, 388, 857
NsiI	ATGCAT	1 cut(s)	850
NspV	TTCGAA	1 cut(s)	195
OliI	CACNNNNGTG	1 cut(s)	395
PciSI	GCTCTTC	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	700
PfeI	GAWTC	3 cut(s)	302, 460, 733
Ple19I	CGATCG	1 cut(s)	58
PleI	GAGTC	4 cut(s)	282, 395, 480, 769
PluTI	GGCGCC	1 cut(s)	173
PmaCI	CACGTG	1 cut(s)	397
PmlI	CACGTG	1 cut(s)	397
PpsI	GAGTC	4 cut(s)	282, 395, 480, 769
Ppu21I	YACGTR	2 cut(s)	397, 881
PshAI	GACNNNNGTC	2 cut(s)	57, 896
PspCI	CACGTG	1 cut(s)	397
PspEI	GGTNACC	1 cut(s)	284
PspFI	CCCAGC	1 cut(s)	574
PspN4I	GGNNCC	4 cut(s)	171, 249, 528, 582
PsuI	RGATCY	2 cut(s)	580, 939
PvuI	CGATCG	1 cut(s)	58
RsaI	GTAC	5 cut(s)	75, 608, 628, 768, 879
RsaNI	GTAC	5 cut(s)	74, 607, 627, 767, 878
RseI	CAYNNNNRTG	2 cut(s)	90, 395
SapI	GCTCTTC	1 cut(s)	490
Sau3AI	GATC	8 cut(s)	55, 139, 179, 221, 376, 546, 580, 939
ScaI	AGTACT	2 cut(s)	628, 768
SchI	GAGTC	4 cut(s)	283, 396, 480, 770
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	4 cut(s)	28, 82, 736, 835
SfoI	GGCGCC	1 cut(s)	171
SfuI	TTCGAA	1 cut(s)	195
SmiMI	CAYNNNNRTG	2 cut(s)	90, 395
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	3 cut(s)	191, 352, 538
SsiI	CCGC	6 cut(s)	80, 98, 212, 254, 524, 578
SspDI	GGCGCC	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	5 cut(s)	26, 326, 383, 505, 650
TaiI	ACGT	4 cut(s)	90, 399, 843, 883
TaqI	TCGA	3 cut(s)	90, 195, 736
TasI	AATT	3 cut(s)	191, 352, 538
TatI	WGTACW	2 cut(s)	626, 766
TfiI	GAWTC	3 cut(s)	302, 460, 733
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	5 cut(s)	26, 123, 284, 388, 857
Tsp45I	GTSAC	5 cut(s)	26, 123, 284, 388, 857
TspDTI	ATGAA	3 cut(s)	249, 606, 710
TspGWI	ACGGA	2 cut(s)	60, 345
TspRI	CASTG	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XmiI	GTMKAC	2 cut(s)	441, 466
ZrmI	AGTACT	2 cut(s)	628, 768
Zsp2I	ATGCAT	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.