Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0020256

Physical Location & Seq

Genomic Coordinates Forward (+)

194746 .. 198568

Gene Structure 3823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1000900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAATTCCCAAATCAAAGAAACCACCATCACCGTCATCATGATCAGAGGGACGATGAAGAAAGACAGAGTTACCCGCCACCGGGAACTACGCTGTCTCCCTTTGATCAACCTCCACCTCCTCCAAGACCTTACCACTATGGAGAGGATCAACCTCCACCTCCTCCAAAACCTTACTACTATCGAGACGATCAACCTCCACCTCCTCCAAGGCCTTACTACTATGGAGAGGATCAACATCCACCACCACCACCACCTTCCTGCTACAGAGAAGATCAACCACCACCGAATTCATACTACGAAGCAGATAGACCACCACCGATCCGTGTGAGCCATGTGTCCCACTCTTCCCATGGTTATGCACCTCCAAGTCCACCCTCCCAATCCCAAGGGCTTCTCCACCACCAACCACCAGCGCCACCAGTACAGAATTACGACTACCCATCGTCACAAGCTACTCCAAGCCCACGGCCTGTTACCGTGCACCATGTTGCTCATCAAGTTCACCATGAATCCCCTGCTCCTCAGTTTGGAACTGAAACCCATCACACCTCTCACTTGCCCTCTTCCTCTCCCCACAACTCTTACCTCTCGAACAAGCCCACTTTCAGAATCTTCTCAAAGGCCGACCCCAATTTATCTCTCAGCATCAGAGAGGGCAAGGTCATTCTTGCCCGATACCAACCAACCGATGACTTCCAGCGGTGGTATAAAGACGAGAAGTACAGCACACAAGTGAAGGACGAAGAGCGCTTCCCTTCCTTTGCTCTCATCAACAAAGCCACTGGCCACGCCCTCAAGCATTCCATCGGAGCCACTCAGCCTGTGCAGCTGAGACCTTATAATCCAGATGTTCTTGATGAGTCTATGCTGTGGACTGAGAGTGCGGACTTAGGTGACGGTTTCAGAACTGTTAGGATGGTTAATAACATTCACCTTAATGTGGATGCTTTTCATGGTGACAAGAAATCTGGGGGTGTTCATGATGGCACTACCATAGTCCTGTGGAATAAAAATAAAGGAGATAACCAGAGATGGAAGATTGTACCTCACTGTAAGATCCTTTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010118 GO:0030246 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0090332 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

358

Amino Acids

40.8

Weight (kDa)

6.71

Isoelectric Point (pI)

69.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39050
malus_domestica	MD12G1000900.v1.1 MD14G1001100.v1.1
prunus_persica	Prupe.7G001300_v2.0.a1 Prupe.7G001300_v2.0.a1
pyrus_communis	pycom49g00060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	843
AciI	CCGC	3 cut(s)	77, 703, 887
AclWI	GGATC	4 cut(s)	156, 240, 316, 1054
AcoI	YGGCCR	1 cut(s)	787
AcsI	RAATTY	2 cut(s)	5, 289
AfaI	GTAC	3 cut(s)	426, 725, 1047
AfeI	AGCGCT	1 cut(s)	752
AfiI	CCNNNNNNNGG	4 cut(s)	82, 83, 530, 943
AleI	CACNNNNGTG	1 cut(s)	734
AluBI	AGCT	2 cut(s)	455, 832
AluI	AGCT	2 cut(s)	455, 832
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	3 cut(s)	102, 180, 829
Alw44I	GTGCAC	1 cut(s)	482
AlwI	GGATC	4 cut(s)	156, 240, 316, 1054
Aor51HI	AGCGCT	1 cut(s)	752
AoxI	GGCC	4 cut(s)	212, 470, 624, 787
ApaLI	GTGCAC	1 cut(s)	482
ApeKI	GCWGC	1 cut(s)	829
ApoI	RAATTY	2 cut(s)	5, 289
AspLEI	GCGC	2 cut(s)	418, 753
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	5 cut(s)	23, 497, 908, 926, 971
BaeGI	GKGCMC	1 cut(s)	486
BalI	TGGCCA	1 cut(s)	789
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	841
BccI	CCATC	7 cut(s)	36, 451, 552, 815, 913, 980, 1029
BceAI	ACGGC	1 cut(s)	485
BclI	TGATCA	2 cut(s)	43, 106
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	3 cut(s)	102, 180, 829
BfmI	CTRYAG	1 cut(s)	265
BfoI	RGCGCY	2 cut(s)	419, 754
BisI	GCNGC	1 cut(s)	830
BlsI	GCNGC	1 cut(s)	831
Bme1390I	CCNGG	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	814
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	657, 937
BpuEI	CTTGAG	1 cut(s)	782
BpuMI	CCSGG	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	829
BsaJI	CCNNGG	4 cut(s)	209, 352, 388, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 83, 530, 943
Bse1I	ACTGG	2 cut(s)	422, 790
Bse8I	GATNNNNATC	1 cut(s)	237
BseDI	CCNNGG	4 cut(s)	209, 352, 388, 467
BseGI	GGATG	3 cut(s)	238, 924, 952
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	4 cut(s)	82, 83, 530, 943
BseMII	CTCAG	5 cut(s)	539, 658, 824, 833, 870
BseNI	ACTGG	2 cut(s)	422, 790
BseRI	GAGGAG	4 cut(s)	111, 153, 195, 513
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	1 cut(s)	841
BsgI	GTGCAG	1 cut(s)	848
BshFI	GGCC	4 cut(s)	214, 472, 626, 789
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	83
BslFI	GGGAC	2 cut(s)	65, 325
BslI	CCNNNNNNNGG	4 cut(s)	82, 83, 530, 943
BsmAI	GTCTC	3 cut(s)	102, 180, 829
BsmBI	CGTCTC	1 cut(s)	180
BsmFI	GGGAC	2 cut(s)	65, 325
BsmI	GAATGC	1 cut(s)	802
BsnI	GGCC	4 cut(s)	214, 472, 626, 789
Bso31I	GGTCTC	1 cut(s)	829
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	8 cut(s)	43, 106, 148, 190, 232, 274, 321, 1059
Bsp19I	CCATGG	1 cut(s)	352
BspACI	CCGC	3 cut(s)	77, 703, 887
BspANI	GGCC	4 cut(s)	214, 472, 626, 789
BspCNI	CTCAG	5 cut(s)	538, 657, 825, 832, 871
BspHI	TCATGA	2 cut(s)	40, 982
BspLI	GGNNCC	1 cut(s)	814
BspPI	GGATC	4 cut(s)	156, 240, 316, 1054
BspQI	GCTCTTC	1 cut(s)	741
BspTNI	GGTCTC	1 cut(s)	829
BsrI	ACTGG	2 cut(s)	422, 790
BssECI	CCNNGG	4 cut(s)	209, 352, 388, 467
BssMI	GATC	8 cut(s)	43, 106, 148, 190, 232, 274, 321, 1059
BssT1I	CCWWGG	3 cut(s)	209, 352, 388
Bst4CI	ACNGT	5 cut(s)	35, 481, 902, 913, 1055
Bst6I	CTCTTC	3 cut(s)	352, 571, 741
BstDEI	CTNAG	6 cut(s)	525, 644, 819, 833, 879, 892
BstDSI	CCRYGG	2 cut(s)	352, 467
BstF5I	GGATG	3 cut(s)	238, 924, 952
BstH2I	RGCGCY	2 cut(s)	419, 754
BstHHI	GCGC	2 cut(s)	418, 753
BstKTI	GATC	8 cut(s)	46, 109, 151, 193, 235, 277, 324, 1062
BstMAI	GTCTC	3 cut(s)	102, 180, 829
BstMBI	GATC	8 cut(s)	43, 106, 148, 190, 232, 274, 321, 1059
BstMWI	GCNNNNNNNGC	1 cut(s)	829
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	841
BstX2I	RGATCY	1 cut(s)	1059
BstYI	RGATCY	1 cut(s)	1059
BsuRI	GGCC	4 cut(s)	214, 472, 626, 789
BtgI	CCRYGG	2 cut(s)	352, 467
BtsCI	GGATG	3 cut(s)	238, 924, 952
BtsIMutI	CAGTG	2 cut(s)	783, 1051
CciI	TCATGA	2 cut(s)	40, 982
CfoI	GCGC	2 cut(s)	418, 753
Csp6I	GTAC	3 cut(s)	425, 724, 1046
CviAII	CATG	7 cut(s)	41, 335, 353, 488, 509, 956, 983
CviQI	GTAC	3 cut(s)	425, 724, 1046
DdeI	CTNAG	6 cut(s)	525, 644, 819, 833, 879, 892
DpnI	GATC	8 cut(s)	45, 108, 150, 192, 234, 276, 323, 1061
DpnII	GATC	8 cut(s)	43, 106, 148, 190, 232, 274, 321, 1059
EaeI	YGGCCR	1 cut(s)	787
Eam1104I	CTCTTC	3 cut(s)	352, 571, 741
EarI	CTCTTC	3 cut(s)	352, 571, 741
Eco130I	CCWWGG	3 cut(s)	209, 352, 388
Eco147I	AGGCCT	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	829
Eco47III	AGCGCT	1 cut(s)	752
EcoRI	GAATTC	2 cut(s)	5, 289
EcoT14I	CCWWGG	3 cut(s)	209, 352, 388
ErhI	CCWWGG	3 cut(s)	209, 352, 388
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	7 cut(s)	44, 338, 356, 491, 512, 959, 986
FaqI	GGGAC	2 cut(s)	65, 325
FatI	CATG	7 cut(s)	40, 334, 352, 487, 508, 955, 982
FauI	CCCGC	1 cut(s)	84
FbaI	TGATCA	2 cut(s)	43, 106
Fnu4HI	GCNGC	1 cut(s)	830
FokI	GGATG	3 cut(s)	225, 931, 959
Fsp4HI	GCNGC	1 cut(s)	830
GlaI	GCGC	2 cut(s)	417, 752
GluI	GCNGC	1 cut(s)	830
HaeII	RGCGCY	2 cut(s)	419, 754
HaeIII	GGCC	4 cut(s)	214, 472, 626, 789
HapII	CCGG	1 cut(s)	83
HhaI	GCGC	2 cut(s)	418, 753
Hin1II	CATG	7 cut(s)	44, 338, 356, 491, 512, 959, 986
Hin6I	GCGC	2 cut(s)	416, 751
HinP1I	GCGC	2 cut(s)	416, 751
HinfI	GANTC	3 cut(s)	512, 612, 863
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	5 cut(s)	23, 497, 908, 926, 971
Hpy166II	GTNNAC	4 cut(s)	374, 484, 505, 876
Hpy188I	TCNGA	5 cut(s)	48, 611, 653, 812, 908
Hpy188III	TCNNGA	6 cut(s)	41, 185, 592, 848, 857, 983
Hpy8I	GTNNAC	4 cut(s)	374, 484, 505, 876
HpyAV	CCTTC	3 cut(s)	267, 733, 768
HpyCH4III	ACNGT	5 cut(s)	35, 481, 902, 913, 1055
HpyCH4V	TGCA	4 cut(s)	362, 484, 829, 1069
HpyF10VI	GCNNNNNNNGC	1 cut(s)	829
HpyF3I	CTNAG	6 cut(s)	525, 644, 819, 833, 879, 892
Hsp92II	CATG	7 cut(s)	44, 338, 356, 491, 512, 959, 986
HspAI	GCGC	2 cut(s)	416, 751
Ksp22I	TGATCA	2 cut(s)	43, 106
Kzo9I	GATC	8 cut(s)	43, 106, 148, 190, 232, 274, 321, 1059
LguI	GCTCTTC	1 cut(s)	741
LmnI	GCTCC	2 cut(s)	526, 812
Lsp1109I	GCAGC	1 cut(s)	841
LweI	GCATC	2 cut(s)	657, 937
MaeIII	GTNAC	5 cut(s)	71, 447, 475, 896, 959
MalI	GATC	8 cut(s)	45, 108, 150, 192, 234, 276, 323, 1061
MboI	GATC	8 cut(s)	43, 106, 148, 190, 232, 274, 321, 1059
MboII	GAAGA	7 cut(s)	71, 284, 339, 558, 607, 758, 1051
MflI	RGATCY	1 cut(s)	1059
MhlI	GDGCHC	1 cut(s)	486
MlsI	TGGCCA	1 cut(s)	789
MluCI	AATT	4 cut(s)	5, 289, 430, 634
MluNI	TGGCCA	1 cut(s)	789
MlyI	GAGTC	1 cut(s)	872
Mox20I	TGGCCA	1 cut(s)	789
MscI	TGGCCA	1 cut(s)	789
MseI	TTAA	2 cut(s)	924, 939
MslI	CAYNNNNRTG	3 cut(s)	357, 734, 939
Msp20I	TGGCCA	1 cut(s)	789
MspA1I	CMGCKG	2 cut(s)	703, 832
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	802
MwoI	GCNNNNNNNGC	1 cut(s)	829
NciI	CCSGG	1 cut(s)	84
NcoI	CCATGG	1 cut(s)	352
NdeII	GATC	8 cut(s)	43, 106, 148, 190, 232, 274, 321, 1059
NlaIII	CATG	7 cut(s)	44, 338, 356, 491, 512, 959, 986
NlaIV	GGNNCC	1 cut(s)	814
NmuCI	GTSAC	3 cut(s)	447, 896, 959
OliI	CACNNNNGTG	1 cut(s)	734
PagI	TCATGA	2 cut(s)	40, 982
PceI	AGGCCT	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	741
PctI	GAATGC	1 cut(s)	802
PfeI	GAWTC	2 cut(s)	512, 612
PkrI	GCNGC	1 cut(s)	831
PleI	GAGTC	1 cut(s)	871
PpsI	GAGTC	1 cut(s)	871
PsiI	TTATAA	1 cut(s)	843
PspN4I	GGNNCC	1 cut(s)	814
PsuI	RGATCY	1 cut(s)	1059
PvuII	CAGCTG	1 cut(s)	832
RsaI	GTAC	3 cut(s)	426, 725, 1047
RsaNI	GTAC	3 cut(s)	425, 724, 1046
RseI	CAYNNNNRTG	3 cut(s)	357, 734, 939
SapI	GCTCTTC	1 cut(s)	741
SaqAI	TTAA	2 cut(s)	924, 939
SatI	GCNGC	1 cut(s)	830
Sau3AI	GATC	8 cut(s)	43, 106, 148, 190, 232, 274, 321, 1059
SchI	GAGTC	1 cut(s)	872
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	2 cut(s)	657, 937
SfcI	CTRYAG	1 cut(s)	265
SmiMI	CAYNNNNRTG	3 cut(s)	357, 734, 939
SmlI	CTYRAG	1 cut(s)	797
SmoI	CTYRAG	1 cut(s)	797
Sse9I	AATT	4 cut(s)	5, 289, 430, 634
SseBI	AGGCCT	1 cut(s)	214
SsiI	CCGC	3 cut(s)	77, 703, 887
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	3 cut(s)	209, 352, 388
TaaI	ACNGT	5 cut(s)	35, 481, 902, 913, 1055
TaqI	TCGA	2 cut(s)	184, 593
TasI	AATT	4 cut(s)	5, 289, 430, 634
TatI	WGTACW	2 cut(s)	424, 723
TfiI	GAWTC	2 cut(s)	512, 612
Tru1I	TTAA	2 cut(s)	924, 939
Tru9I	TTAA	2 cut(s)	924, 939
TscAI	CASTG	2 cut(s)	790, 1058
TseFI	GTSAC	3 cut(s)	447, 896, 959
TseI	GCWGC	1 cut(s)	829
Tsp45I	GTSAC	3 cut(s)	447, 896, 959
TspDTI	ATGAA	5 cut(s)	72, 282, 525, 944, 971
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	790, 1058
VneI	GTGCAC	1 cut(s)	482
XapI	RAATTY	2 cut(s)	5, 289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.