Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_49

Orthogroup ID

OG0020256

Physical Location & Seq

Genomic Coordinates Forward (+)

98303 .. 99959

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom49g00060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAATTCCCAAATCAAAGAAACCACCATCACCGTCATCATGATCAGAGGGACGAGGAAGAAAGAGAGAATTACCCACCACCGGGAACTAGGCTGTCTCCTTTTGATCAACCTCCACCTCCTCCGAGACCTTCCTACTATGGAGAGGATCAACATCCACCACCACCACCTTCCTACTACAGAGAAGATCAACCACCACCGGATTCATACTACGAAGCAGATAGACCACCACCATCCCGTGTGAGCCATGTGTCCCACTCTTCCCATGGTTTTGCACCTCCAAGTCCACCCTCCCAACCCCAAGGCTTTCTCCACCACCCACCACCAGTGCAGAATTACAACTACCCATCGTCACAAGCTACTCCAAGTCCACCGCCTGTTACCGTGCACCATGTTGCTCACCAAGTTCACCATGAATCCCCTGCTGCTCAGTTTGGAACTGAAACCCATCAGACTTCTCATTTGCCCTCTTCCTCTCCCAACAACTCTTACCTCTCGAACAAGCCCACTTTTAGAATCTTCTCAAAGGCCGATCCCAATTTCTCTCTCAGCATCAGAGAGGGCAAGGTCATTCTTGCCCGATCCCAACCAACCGATGACTTCCAGCGGTGGTACAAAGACGAGAAGTACAGTACACAGGTGAAGGACGAAGAGCGCTTTCCTTCCTTTGCTCTCATCAACAAAGCCACTGGCCACGCCCTGAAGCATTCCATCGGAGCCACTCAGCCTTTGAGACCTTATAATCCCGATGATCTTGATGAGTCTCTACTGTGGACTGAGAGTGCAGACTTAGGTGACGGTTTCAGAACTGTTAGGATGGTTAATAACATTCGCCTTAATCTGGATGCTTATCATGGTGACAAGAAATCTGGGGGTGTTCATGATGGCACTACCATAGTTCTGTGGAATAAAAATAAAGGAGATAACCAGAGATGGAAGATTGTACCCAACTGTAAGTTGTCTACATATAACTCGAAAGACCAAGCAATTTCCTTGATCCTTTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010118 GO:0030246 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0090332 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

337

Amino Acids

38.2

Weight (kDa)

6.62

Isoelectric Point (pI)

62.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39050
malus_domestica	MD12G1000900.v1.1 MD14G1001100.v1.1
prunus_persica	Prupe.7G001300_v2.0.a1 Prupe.7G001300_v2.0.a1
pyrus_communis	pycom49g00060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	741
AccI	GTMKAC	1 cut(s)	962
AciI	CCGC	2 cut(s)	374, 607
AclWI	GGATC	4 cut(s)	156, 527, 576, 991
AcoI	YGGCCR	1 cut(s)	691
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	722
AfaI	GTAC	4 cut(s)	614, 629, 634, 945
AfeI	AGCGCT	1 cut(s)	656
AfiI	CCNNNNNNNGG	3 cut(s)	82, 83, 841
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	4 cut(s)	102, 121, 727, 768
Alw44I	GTGCAC	1 cut(s)	386
AlwI	GGATC	4 cut(s)	156, 527, 576, 991
Aor51HI	AGCGCT	1 cut(s)	656
AoxI	GGCC	2 cut(s)	528, 691
ApaLI	GTGCAC	1 cut(s)	386
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	445, 477
AspLEI	GCGC	1 cut(s)	657
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	6 cut(s)	23, 392, 401, 652, 806, 869
BaeGI	GKGCMC	1 cut(s)	390
BalI	TGGCCA	1 cut(s)	693
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	8 cut(s)	36, 241, 355, 456, 719, 811, 878, 927
BclI	TGATCA	2 cut(s)	43, 106
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	4 cut(s)	102, 121, 727, 768
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	178
BfoI	RGCGCY	1 cut(s)	658
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	718
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	561, 835
BpuMI	CCSGG	1 cut(s)	84
BsaBI	GATNNNNATC	2 cut(s)	153, 849
BsaI	GGTCTC	2 cut(s)	121, 727
BsaJI	CCNNGG	2 cut(s)	265, 301
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 83, 841
Bse1I	ACTGG	2 cut(s)	326, 694
Bse8I	GATNNNNATC	2 cut(s)	153, 849
BseDI	CCNNGG	2 cut(s)	265, 301
BseGI	GGATG	4 cut(s)	154, 233, 822, 850
BseJI	GATNNNNATC	2 cut(s)	153, 849
BseLI	CCNNNNNNNGG	3 cut(s)	82, 83, 841
BseMII	CTCAG	4 cut(s)	443, 562, 737, 768
BseNI	ACTGG	2 cut(s)	326, 694
BseRI	GAGGAG	1 cut(s)	111
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	412
BsgI	GTGCAG	2 cut(s)	350, 804
BshFI	GGCC	2 cut(s)	530, 693
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	2 cut(s)	83, 200
BslFI	GGGAC	2 cut(s)	65, 238
BslI	CCNNNNNNNGG	3 cut(s)	82, 83, 841
BsmAI	GTCTC	4 cut(s)	102, 121, 727, 768
BsmFI	GGGAC	2 cut(s)	65, 238
BsmI	GAATGC	1 cut(s)	706
BsnI	GGCC	2 cut(s)	530, 693
Bso31I	GGTCTC	2 cut(s)	121, 727
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	8 cut(s)	43, 106, 148, 187, 532, 581, 751, 996
Bsp19I	CCATGG	1 cut(s)	265
BspACI	CCGC	2 cut(s)	374, 607
BspANI	GGCC	2 cut(s)	530, 693
BspCNI	CTCAG	4 cut(s)	442, 561, 736, 769
BspHI	TCATGA	2 cut(s)	40, 880
BspLI	GGNNCC	1 cut(s)	718
BspPI	GGATC	4 cut(s)	156, 527, 576, 991
BspQI	GCTCTTC	1 cut(s)	645
BspTNI	GGTCTC	2 cut(s)	121, 727
BsrI	ACTGG	2 cut(s)	326, 694
BssECI	CCNNGG	2 cut(s)	265, 301
BssMI	GATC	8 cut(s)	43, 106, 148, 187, 532, 581, 751, 996
BssT1I	CCWWGG	2 cut(s)	265, 301
Bst4CI	ACNGT	7 cut(s)	35, 385, 632, 771, 800, 811, 953
Bst6I	CTCTTC	3 cut(s)	265, 475, 645
BstDEI	CTNAG	5 cut(s)	429, 548, 723, 777, 790
BstDSI	CCRYGG	1 cut(s)	265
BstF5I	GGATG	4 cut(s)	154, 233, 822, 850
BstH2I	RGCGCY	1 cut(s)	658
BstHHI	GCGC	1 cut(s)	657
BstKTI	GATC	8 cut(s)	46, 109, 151, 190, 535, 584, 754, 999
BstMAI	GTCTC	4 cut(s)	102, 121, 727, 768
BstMBI	GATC	8 cut(s)	43, 106, 148, 187, 532, 581, 751, 996
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	178
BstSLI	GKGCMC	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	530, 693
BtgI	CCRYGG	1 cut(s)	265
BtsCI	GGATG	4 cut(s)	154, 233, 822, 850
BtsIMutI	CAGTG	2 cut(s)	333, 687
CciI	TCATGA	2 cut(s)	40, 880
CfoI	GCGC	1 cut(s)	657
Csp6I	GTAC	4 cut(s)	613, 628, 633, 944
CviAII	CATG	7 cut(s)	41, 248, 266, 392, 413, 854, 881
CviQI	GTAC	4 cut(s)	613, 628, 633, 944
DdeI	CTNAG	5 cut(s)	429, 548, 723, 777, 790
DpnI	GATC	8 cut(s)	45, 108, 150, 189, 534, 583, 753, 998
DpnII	GATC	8 cut(s)	43, 106, 148, 187, 532, 581, 751, 996
EaeI	YGGCCR	1 cut(s)	691
Eam1104I	CTCTTC	3 cut(s)	265, 475, 645
EarI	CTCTTC	3 cut(s)	265, 475, 645
Eco130I	CCWWGG	2 cut(s)	265, 301
Eco31I	GGTCTC	2 cut(s)	121, 727
Eco47III	AGCGCT	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	722
EcoRI	GAATTC	1 cut(s)	5
EcoT14I	CCWWGG	2 cut(s)	265, 301
ErhI	CCWWGG	2 cut(s)	265, 301
FaeI	CATG	7 cut(s)	44, 251, 269, 395, 416, 857, 884
FaqI	GGGAC	2 cut(s)	65, 238
FatI	CATG	7 cut(s)	40, 247, 265, 391, 412, 853, 880
FbaI	TGATCA	2 cut(s)	43, 106
FblI	GTMKAC	1 cut(s)	962
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	4 cut(s)	141, 220, 829, 857
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	1 cut(s)	656
GluI	GCNGC	1 cut(s)	426
HaeII	RGCGCY	1 cut(s)	658
HaeIII	GGCC	2 cut(s)	530, 693
HapII	CCGG	2 cut(s)	83, 200
HhaI	GCGC	1 cut(s)	657
Hin1II	CATG	7 cut(s)	44, 251, 269, 395, 416, 857, 884
Hin6I	GCGC	1 cut(s)	655
HinP1I	GCGC	1 cut(s)	655
HinfI	GANTC	4 cut(s)	203, 416, 516, 761
HpaII	CCGG	2 cut(s)	83, 200
HphI	GGTGA	6 cut(s)	23, 392, 401, 652, 806, 869
Hpy166II	GTNNAC	7 cut(s)	287, 371, 388, 409, 635, 774, 963
Hpy188I	TCNGA	6 cut(s)	48, 126, 453, 557, 716, 806
Hpy188III	TCNNGA	6 cut(s)	41, 496, 746, 755, 842, 881
Hpy8I	GTNNAC	7 cut(s)	287, 371, 388, 409, 635, 774, 963
HpyAV	CCTTC	4 cut(s)	141, 180, 637, 672
HpyCH4III	ACNGT	7 cut(s)	35, 385, 632, 771, 800, 811, 953
HpyCH4V	TGCA	5 cut(s)	275, 331, 388, 785, 1006
HpyF3I	CTNAG	5 cut(s)	429, 548, 723, 777, 790
Hsp92II	CATG	7 cut(s)	44, 251, 269, 395, 416, 857, 884
HspAI	GCGC	1 cut(s)	655
Ksp22I	TGATCA	2 cut(s)	43, 106
Kzo9I	GATC	8 cut(s)	43, 106, 148, 187, 532, 581, 751, 996
LguI	GCTCTTC	1 cut(s)	645
LmnI	GCTCC	1 cut(s)	716
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	2 cut(s)	561, 835
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	4 cut(s)	351, 379, 794, 857
MalI	GATC	8 cut(s)	45, 108, 150, 189, 534, 583, 753, 998
MboI	GATC	8 cut(s)	43, 106, 148, 187, 532, 581, 751, 996
MboII	GAAGA	7 cut(s)	71, 197, 252, 462, 511, 662, 949
MhlI	GDGCHC	1 cut(s)	390
MlsI	TGGCCA	1 cut(s)	693
MluCI	AATT	5 cut(s)	5, 70, 334, 538, 987
MluNI	TGGCCA	1 cut(s)	693
MlyI	GAGTC	1 cut(s)	770
Mox20I	TGGCCA	1 cut(s)	693
MscI	TGGCCA	1 cut(s)	693
MseI	TTAA	2 cut(s)	822, 837
Msp20I	TGGCCA	1 cut(s)	693
MspA1I	CMGCKG	1 cut(s)	607
MspI	CCGG	2 cut(s)	83, 200
MspR9I	CCNGG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	706
NciI	CCSGG	1 cut(s)	84
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	8 cut(s)	43, 106, 148, 187, 532, 581, 751, 996
NlaIII	CATG	7 cut(s)	44, 251, 269, 395, 416, 857, 884
NlaIV	GGNNCC	1 cut(s)	718
NmuCI	GTSAC	3 cut(s)	351, 794, 857
PagI	TCATGA	2 cut(s)	40, 880
PciSI	GCTCTTC	1 cut(s)	645
PctI	GAATGC	1 cut(s)	706
PfeI	GAWTC	3 cut(s)	203, 416, 516
PkrI	GCNGC	1 cut(s)	427
PleI	GAGTC	1 cut(s)	769
PpsI	GAGTC	1 cut(s)	769
PsiI	TTATAA	1 cut(s)	741
PspN4I	GGNNCC	1 cut(s)	718
RsaI	GTAC	4 cut(s)	614, 629, 634, 945
RsaNI	GTAC	4 cut(s)	613, 628, 633, 944
SapI	GCTCTTC	1 cut(s)	645
SaqAI	TTAA	2 cut(s)	822, 837
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	8 cut(s)	43, 106, 148, 187, 532, 581, 751, 996
SchI	GAGTC	1 cut(s)	770
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	390
SfaNI	GCATC	2 cut(s)	561, 835
SfcI	CTRYAG	1 cut(s)	178
Sse9I	AATT	5 cut(s)	5, 70, 334, 538, 987
SsiI	CCGC	2 cut(s)	374, 607
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	2 cut(s)	265, 301
TaaI	ACNGT	7 cut(s)	35, 385, 632, 771, 800, 811, 953
TaqI	TCGA	2 cut(s)	497, 974
TasI	AATT	5 cut(s)	5, 70, 334, 538, 987
TatI	WGTACW	2 cut(s)	627, 632
TfiI	GAWTC	3 cut(s)	203, 416, 516
Tru1I	TTAA	2 cut(s)	822, 837
Tru9I	TTAA	2 cut(s)	822, 837
TscAI	CASTG	2 cut(s)	333, 694
TseFI	GTSAC	3 cut(s)	351, 794, 857
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	3 cut(s)	351, 794, 857
TspDTI	ATGAA	3 cut(s)	195, 429, 869
TspRI	CASTG	2 cut(s)	333, 694
VneI	GTGCAC	1 cut(s)	386
XapI	RAATTY	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	962
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.