Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0020256

Physical Location & Seq

Genomic Coordinates Forward (+)

219351 .. 221419

Gene Structure 2069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1001100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAATTCCCAAATCAAAGAAACCATCATCACCGTCATCATGATCAGAGGGACGAGGAAGCAAGAGAGAATTACCCACCACCGGGAACTAGGCTGTCTCCTTTTGATCAACCTCCACCTCCTCCAAGACCTTCCTACTATGGAGAGGATCAACATCCACCACCACCACCACCACCTTCCTACTACAGAGAAGATCAACCACCACCGGATTCATACTACGAAGCAGATAGACCACCACCGACCCGTGTGAGCCATGTGTCCCACTCTTCCCATGGTTTTGCACCTCCAAGTCCACCCTCCCAACCCGAAGGCTTTCTCCACCACCCACCACCAGTGCAGAATTACAACTACCCATCGTCACAAGCTACTCCAAGTCCACCGCCTGTTACCGTGCACCATGTTGCTCACCAATTTCACCATGAGTCCCCTGCTGCTCAGTTTGGCACCGAAACCCATCAGACTTCTCATTTGCCCTCTTCCTCTCCCCACAACTCTTACCTCTCGAACAAGCCCACTTTCAGAATCTTCTCAAAGGCCGATCCCAATTTCTCTCTCAGCATCAGAGAGGGCAAGGTCATTCTTGCCCGATCCCAACCAACCGATGACTTCCAGCTGTGGTACAAAGACGAGAAGTACAGTACACAGGTGAAGGACGAAGAGCGCTTCCCTTCCTTTGCTCTCATCAACAAAGCCACTGGCCACGCCCTGAAGCATTCCATCGGAGCCACTCAGCCTGTGCAGTTGAGACCTTATAATCCCGATGATCTTGATGAGTCTCTACTGTGGACTGAGAGTGCGGACTTAGGTGACGGTTTCAGAACTGTTAGGATGGTTAATAACATTCACCTTAATCTGGATGCTTATCATGGTGACAAGAAATCTGGGGGTGTTCATGATGGCACTACCATAGTTGTGTGGAATAAAAATAAAGGAGATAACCAGAGATGGAAGATTGTACCCAACTGTAAGATCCTTTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010118 GO:0030246 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0090332 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

37.15

Weight (kDa)

6.46

Isoelectric Point (pI)

62.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39050
malus_domestica	MD12G1000900.v1.1 MD14G1001100.v1.1
prunus_persica	Prupe.7G001300_v2.0.a1 Prupe.7G001300_v2.0.a1
pyrus_communis	pycom49g00060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	753
AccB1I	GGYRCC	1 cut(s)	443
AciI	CCGC	2 cut(s)	380, 797
AclWI	GGATC	4 cut(s)	156, 533, 582, 964
AcoI	YGGCCR	1 cut(s)	697
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	728
AfaI	GTAC	4 cut(s)	620, 635, 640, 957
AfeI	AGCGCT	1 cut(s)	662
AfiI	CCNNNNNNNGG	3 cut(s)	82, 83, 853
AluBI	AGCT	2 cut(s)	365, 613
AluI	AGCT	2 cut(s)	365, 613
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	3 cut(s)	102, 739, 780
Alw44I	GTGCAC	1 cut(s)	392
AlwI	GGATC	4 cut(s)	156, 533, 582, 964
Aor51HI	AGCGCT	1 cut(s)	662
AoxI	GGCC	2 cut(s)	534, 697
ApaLI	GTGCAC	1 cut(s)	392
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	451, 483
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	663
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	7 cut(s)	23, 398, 407, 658, 818, 836, 881
BaeGI	GKGCMC	1 cut(s)	396
BalI	TGGCCA	1 cut(s)	699
BanI	GGYRCC	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	7 cut(s)	33, 361, 462, 725, 823, 890, 939
BclI	TGATCA	2 cut(s)	43, 106
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	3 cut(s)	102, 739, 780
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	184
BfoI	RGCGCY	1 cut(s)	664
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
Bme1390I	CCNGG	1 cut(s)	84
BmiI	GGNNCC	2 cut(s)	445, 724
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	567, 847
BpuMI	CCSGG	1 cut(s)	84
BsaBI	GATNNNNATC	2 cut(s)	153, 861
BsaI	GGTCTC	1 cut(s)	739
BsaJI	CCNNGG	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 83, 853
Bse1I	ACTGG	2 cut(s)	332, 700
Bse8I	GATNNNNATC	2 cut(s)	153, 861
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	3 cut(s)	154, 834, 862
BseJI	GATNNNNATC	2 cut(s)	153, 861
BseLI	CCNNNNNNNGG	3 cut(s)	82, 83, 853
BseMII	CTCAG	4 cut(s)	449, 568, 743, 780
BseNI	ACTGG	2 cut(s)	332, 700
BseRI	GAGGAG	1 cut(s)	111
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	418
BsgI	GTGCAG	2 cut(s)	356, 758
BshFI	GGCC	2 cut(s)	536, 699
BshNI	GGYRCC	1 cut(s)	443
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	2 cut(s)	83, 206
BslFI	GGGAC	3 cut(s)	65, 244, 409
BslI	CCNNNNNNNGG	3 cut(s)	82, 83, 853
BsmAI	GTCTC	3 cut(s)	102, 739, 780
BsmFI	GGGAC	3 cut(s)	65, 244, 409
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	2 cut(s)	536, 699
Bso31I	GGTCTC	1 cut(s)	739
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	8 cut(s)	43, 106, 148, 193, 538, 587, 763, 969
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	2 cut(s)	380, 797
BspANI	GGCC	2 cut(s)	536, 699
BspCNI	CTCAG	4 cut(s)	448, 567, 742, 781
BspHI	TCATGA	2 cut(s)	40, 892
BspLI	GGNNCC	2 cut(s)	445, 724
BspPI	GGATC	4 cut(s)	156, 533, 582, 964
BspQI	GCTCTTC	1 cut(s)	651
BspT107I	GGYRCC	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	739
BsrI	ACTGG	2 cut(s)	332, 700
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	8 cut(s)	43, 106, 148, 193, 538, 587, 763, 969
BssT1I	CCWWGG	1 cut(s)	271
Bst4CI	ACNGT	7 cut(s)	35, 391, 638, 783, 812, 823, 965
Bst6I	CTCTTC	3 cut(s)	271, 481, 651
BstDEI	CTNAG	5 cut(s)	435, 554, 729, 789, 802
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	3 cut(s)	154, 834, 862
BstH2I	RGCGCY	1 cut(s)	664
BstHHI	GCGC	1 cut(s)	663
BstKTI	GATC	8 cut(s)	46, 109, 151, 196, 541, 590, 766, 972
BstMAI	GTCTC	3 cut(s)	102, 739, 780
BstMBI	GATC	8 cut(s)	43, 106, 148, 193, 538, 587, 763, 969
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	184
BstSLI	GKGCMC	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	418
BstX2I	RGATCY	1 cut(s)	969
BstYI	RGATCY	1 cut(s)	969
BsuRI	GGCC	2 cut(s)	536, 699
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	3 cut(s)	154, 834, 862
BtsIMutI	CAGTG	2 cut(s)	339, 693
CciI	TCATGA	2 cut(s)	40, 892
CfoI	GCGC	1 cut(s)	663
Csp6I	GTAC	4 cut(s)	619, 634, 639, 956
CviAII	CATG	7 cut(s)	41, 254, 272, 398, 419, 866, 893
CviQI	GTAC	4 cut(s)	619, 634, 639, 956
DdeI	CTNAG	5 cut(s)	435, 554, 729, 789, 802
DpnI	GATC	8 cut(s)	45, 108, 150, 195, 540, 589, 765, 971
DpnII	GATC	8 cut(s)	43, 106, 148, 193, 538, 587, 763, 969
EaeI	YGGCCR	1 cut(s)	697
Eam1104I	CTCTTC	3 cut(s)	271, 481, 651
EarI	CTCTTC	3 cut(s)	271, 481, 651
Eco130I	CCWWGG	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	739
Eco47III	AGCGCT	1 cut(s)	662
Eco57I	CTGAAG	1 cut(s)	728
EcoRI	GAATTC	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	7 cut(s)	44, 257, 275, 401, 422, 869, 896
FaqI	GGGAC	3 cut(s)	65, 244, 409
FatI	CATG	7 cut(s)	40, 253, 271, 397, 418, 865, 892
FbaI	TGATCA	2 cut(s)	43, 106
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	3 cut(s)	141, 841, 869
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	1 cut(s)	662
GluI	GCNGC	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	664
HaeIII	GGCC	2 cut(s)	536, 699
HapII	CCGG	2 cut(s)	83, 206
HhaI	GCGC	1 cut(s)	663
Hin1II	CATG	7 cut(s)	44, 257, 275, 401, 422, 869, 896
Hin6I	GCGC	1 cut(s)	661
HinP1I	GCGC	1 cut(s)	661
HinfI	GANTC	4 cut(s)	209, 422, 522, 773
HpaII	CCGG	2 cut(s)	83, 206
HphI	GGTGA	7 cut(s)	23, 398, 407, 658, 818, 836, 881
Hpy166II	GTNNAC	5 cut(s)	293, 377, 394, 641, 786
Hpy188I	TCNGA	6 cut(s)	48, 459, 521, 563, 722, 818
Hpy188III	TCNNGA	6 cut(s)	41, 502, 758, 767, 854, 893
Hpy8I	GTNNAC	5 cut(s)	293, 377, 394, 641, 786
HpyAV	CCTTC	5 cut(s)	141, 186, 302, 643, 678
HpyCH4III	ACNGT	7 cut(s)	35, 391, 638, 783, 812, 823, 965
HpyCH4V	TGCA	5 cut(s)	281, 337, 394, 739, 979
HpyF3I	CTNAG	5 cut(s)	435, 554, 729, 789, 802
Hsp92II	CATG	7 cut(s)	44, 257, 275, 401, 422, 869, 896
HspAI	GCGC	1 cut(s)	661
Ksp22I	TGATCA	2 cut(s)	43, 106
Kzo9I	GATC	8 cut(s)	43, 106, 148, 193, 538, 587, 763, 969
LguI	GCTCTTC	1 cut(s)	651
LmnI	GCTCC	1 cut(s)	722
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	2 cut(s)	567, 847
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	4 cut(s)	357, 385, 806, 869
MalI	GATC	8 cut(s)	45, 108, 150, 195, 540, 589, 765, 971
MboI	GATC	8 cut(s)	43, 106, 148, 193, 538, 587, 763, 969
MboII	GAAGA	6 cut(s)	203, 258, 468, 517, 668, 961
MflI	RGATCY	1 cut(s)	969
MhlI	GDGCHC	1 cut(s)	396
MlsI	TGGCCA	1 cut(s)	699
MluCI	AATT	5 cut(s)	5, 70, 340, 410, 544
MluNI	TGGCCA	1 cut(s)	699
MlyI	GAGTC	2 cut(s)	431, 782
Mox20I	TGGCCA	1 cut(s)	699
MroXI	GAANNNNTTC	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	699
MseI	TTAA	2 cut(s)	834, 849
MslI	CAYNNNNRTG	1 cut(s)	911
Msp20I	TGGCCA	1 cut(s)	699
MspA1I	CMGCKG	1 cut(s)	613
MspI	CCGG	2 cut(s)	83, 206
MspR9I	CCNGG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	712
NciI	CCSGG	1 cut(s)	84
NcoI	CCATGG	1 cut(s)	271
NdeII	GATC	8 cut(s)	43, 106, 148, 193, 538, 587, 763, 969
NlaIII	CATG	7 cut(s)	44, 257, 275, 401, 422, 869, 896
NlaIV	GGNNCC	2 cut(s)	445, 724
NmuCI	GTSAC	3 cut(s)	357, 806, 869
PagI	TCATGA	2 cut(s)	40, 892
PciSI	GCTCTTC	1 cut(s)	651
PctI	GAATGC	1 cut(s)	712
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	209, 522
PkrI	GCNGC	1 cut(s)	433
PleI	GAGTC	2 cut(s)	430, 781
PpsI	GAGTC	2 cut(s)	430, 781
PsiI	TTATAA	1 cut(s)	753
PspN4I	GGNNCC	2 cut(s)	445, 724
PsuI	RGATCY	1 cut(s)	969
PvuII	CAGCTG	1 cut(s)	613
RsaI	GTAC	4 cut(s)	620, 635, 640, 957
RsaNI	GTAC	4 cut(s)	619, 634, 639, 956
RseI	CAYNNNNRTG	1 cut(s)	911
SapI	GCTCTTC	1 cut(s)	651
SaqAI	TTAA	2 cut(s)	834, 849
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	8 cut(s)	43, 106, 148, 193, 538, 587, 763, 969
SchI	GAGTC	2 cut(s)	431, 782
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	2 cut(s)	567, 847
SfcI	CTRYAG	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	911
Sse9I	AATT	5 cut(s)	5, 70, 340, 410, 544
SsiI	CCGC	2 cut(s)	380, 797
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	7 cut(s)	35, 391, 638, 783, 812, 823, 965
TaqI	TCGA	1 cut(s)	503
TasI	AATT	5 cut(s)	5, 70, 340, 410, 544
TatI	WGTACW	2 cut(s)	633, 638
TfiI	GAWTC	2 cut(s)	209, 522
Tru1I	TTAA	2 cut(s)	834, 849
Tru9I	TTAA	2 cut(s)	834, 849
TscAI	CASTG	2 cut(s)	339, 700
TseFI	GTSAC	3 cut(s)	357, 806, 869
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	3 cut(s)	357, 806, 869
TspDTI	ATGAA	2 cut(s)	201, 881
TspRI	CASTG	2 cut(s)	339, 700
VneI	GTGCAC	1 cut(s)	392
XapI	RAATTY	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.