AT2G40710

Heptahelical transmembrane protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
16980943 .. 16981606
664 bp
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UTR
Exon/CDS
Intron
AT2G40710.1

Sequence Viewer

Length: 282 bp
ATGGGATTCTCTGGCTTAGCTCCGATTCTTCACAAGCTGATAATCTTTTGGGACCAACCTGAAGCCCTTCACACGACATGTTATGAGATTTTGATGGGTTTGCTTTATGGGTTAGGAGCTCTGGTTTATGCAACTAGGATCCCAGAGAGATGGATGCCGGGTAAATTCGATATAGCAGGACATAGCCATCAGTTGTTTCATGTTCTGGTAGTTGCTGGTGCGTTCACGCACTATAGAGCTGGGCTAGTGTATCTTAAGTGGAGAGATATTGAAGGATGTTGA
Functional Annotation

Protein Analysis

93

Amino Acids

10.54

Weight (kDa)

7.01

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HlyIII PF03006 1 - 78 1.7e-22 Haemolysin-III related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017519)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 133, 146
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 81
AflII CTTAAG 1 cut(s) 254
AflIII ACRYGT 1 cut(s) 77
AgsI TTSAA 1 cut(s) 272
AluBI AGCT 4 cut(s) 20, 37, 119, 239
AluI AGCT 4 cut(s) 20, 37, 119, 239
Alw21I GWGCWC 1 cut(s) 121
AlwI GGATC 2 cut(s) 133, 146
ApoI RAATTY 1 cut(s) 164
Asp700I GAANNNNTTC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 159
AvaII GGWCC 1 cut(s) 52
BamHI GGATCC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 121
BccI CCATC 3 cut(s) 88, 144, 195
BcnI CCSGG 1 cut(s) 159
BfaI CTAG 2 cut(s) 135, 245
BfmI CTRYAG 1 cut(s) 232
BfrI CTTAAG 1 cut(s) 254
BlpI GCTNAGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 53, 140
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 144
Bpu1102I GCTNAGC 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
BseGI GGATG 2 cut(s) 159, 281
BseYI CCCAGC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 121
BsiSI CCGG 1 cut(s) 158
BslFI GGGAC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 138
Bsp1720I GCTNAGC 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 53, 140
BspPI GGATC 2 cut(s) 133, 146
BspTI CTTAAG 1 cut(s) 254
BssMI GATC 1 cut(s) 138
BstAFI CTTAAG 1 cut(s) 254
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 2 cut(s) 159, 281
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 138
BstXI CCANNNNNNTGG 1 cut(s) 150
BstYI RGATCY 1 cut(s) 138
BtsCI GGATG 2 cut(s) 159, 281
Cfr13I GGNCC 1 cut(s) 52
CviAII CATG 2 cut(s) 78, 200
CviJI RGCY 8 cut(s) 15, 20, 37, 65, 119, 186, 239, 244
CviKI_1 RGCY 8 cut(s) 15, 20, 37, 65, 119, 186, 239, 244
DdeI CTNAG 1 cut(s) 16
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Ecl136II GAGCTC 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 121
FaeI CATG 2 cut(s) 81, 203
FaiI YATR 8 cut(s) 79, 84, 108, 129, 173, 183, 201, 234
FaqI GGGAC 1 cut(s) 65
FatI CATG 2 cut(s) 77, 199
FokI GGATG 1 cut(s) 166
FriOI GRGCYC 1 cut(s) 121
FspBI CTAG 2 cut(s) 135, 245
GsaI CCCAGC 1 cut(s) 243
HapII CCGG 1 cut(s) 158
Hin1II CATG 2 cut(s) 81, 203
HinfI GANTC 2 cut(s) 6, 25
HpaII CCGG 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 1 cut(s) 24
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 2 cut(s) 77, 266
HpyCH4V TGCA 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 16
Hsp92II CATG 2 cut(s) 81, 203
Kzo9I GATC 1 cut(s) 138
LmnI GCTCC 2 cut(s) 25, 116
LpnPI CCDG 8 cut(s) 72, 107, 156, 162, 171, 191, 201, 225
LweI GCATC 1 cut(s) 144
MaeI CTAG 2 cut(s) 135, 245
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 1 cut(s) 20
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 1 cut(s) 255
MspCI CTTAAG 1 cut(s) 254
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 159
NciI CCSGG 1 cut(s) 159
NdeII GATC 1 cut(s) 138
NlaIII CATG 2 cut(s) 81, 203
NlaIV GGNNCC 2 cut(s) 53, 140
NspI RCATGY 1 cut(s) 81
PciI ACATGT 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 2 cut(s) 6, 25
PscI ACATGT 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 53, 140
PspPI GGNCC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 138
SacI GAGCTC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 255
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 121
SetI ASST 5 cut(s) 22, 39, 61, 121, 241
SfaNI GCATC 1 cut(s) 144
SfcI CTRYAG 1 cut(s) 232
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 1 cut(s) 164
SspMI CTAG 2 cut(s) 135, 245
SstI GAGCTC 1 cut(s) 121
StyD4I CCNGG 1 cut(s) 157
TaqI TCGA 1 cut(s) 168
TasI AATT 1 cut(s) 164
TfiI GAWTC 2 cut(s) 6, 25
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TspDTI ATGAA 1 cut(s) 188
Vha464I CTTAAG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 164
XceI RCATGY 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 2 cut(s) 135, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.