AT2G45250

response to hormone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017519
Physical Location & Seq
Forward (+)
18661460 .. 18663064
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45250.3

Sequence Viewer

Length: 615 bp
ATGAGGAAAACACCATCTCTCGGAGCGGAACTGCTCTGCTCGTATTCTCTCTCTGATCCATCTCCATCACCATCTCCGTTCTCCAGTGAAATGGAGATTCCGGAGGGGACACCAAAAGATTCAGAAAAGGCCATCGAACAAGATACAGTATCATCAATTGGGGTAAAGAAACCTCCAGTGGACTCTCCAGCCACTACTAATGCTGCTAGCGGTCGACTTGTTTATGTCCGGAGAAGAGTGGAGGTTGACACATCCAAAGCCGCTGCTAGCACTACTAATCCGAATCCGCCTCCTACTAAGGCACCACCCCAGATACCTTCATCACCCGCACAGGCACAGGCACAGGAACCAACCCCTACCAGCCATAAGTTAGACTGGGAAGAGCGTTACCTTCATCTTCAAATGCTTCTTAACAAGCTTAATCAATCTGATCGGACCGATCATGTTCAGATGCTTTGGTCACTTTCCTCCGCCGAGCTTAGCAAGCATGCTGTTGACTTGGAAAAGAGGTCTATTCAGTTCTCTCTCGAGGAAGCGAGAGAGATGCAGCGCGTAGCAGCTTTAAACGTGTTAGGAAGGTCTGTGAATAGTATAAAATCTACATCAAATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.3

Weight (kDa)

6.12

Isoelectric Point (pI)

61.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017519)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40710 AT2G45250 AT2G45250 AT2G45250 AT4G38290 AT4G38330 AT4G38330 AT4G38330 AT4G38330 AT4G38330
malus_domestica MD15G1165100.v1.1
pyrus_communis pycom02g01940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AccBSI CCGCTC 1 cut(s) 26
AccI GTMKAC 1 cut(s) 214
AccII CGCG 1 cut(s) 552
AccIII TCCGGA 2 cut(s) 100, 228
AciI CCGC 6 cut(s) 26, 210, 261, 287, 327, 471
AclWI GGATC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 20
AflIII ACRYGT 1 cut(s) 567
AgsI TTSAA 1 cut(s) 401
AluBI AGCT 3 cut(s) 418, 478, 560
AluI AGCT 3 cut(s) 418, 478, 560
AlwI GGATC 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 527
Aor13HI TCCGGA 2 cut(s) 100, 228
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 4 cut(s) 203, 263, 547, 557
AspLEI GCGC 1 cut(s) 552
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 2 cut(s) 60, 315
AsuNHI GCTAGC 2 cut(s) 206, 266
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 1 cut(s) 435
BanI GGYRCC 1 cut(s) 301
BbvI GCAGC 4 cut(s) 190, 250, 559, 569
BccI CCATC 5 cut(s) 22, 67, 73, 79, 140
BcgI CGANNNNNNTGC 2 cut(s) 526, 560
BfaI CTAG 2 cut(s) 207, 267
BisI GCNGC 5 cut(s) 204, 261, 264, 548, 558
BlpI GCTNAGC 1 cut(s) 479
BlsI GCNGC 5 cut(s) 205, 262, 265, 549, 559
Bme18I GGWCC 1 cut(s) 435
BmeT110I CYCGRG 1 cut(s) 527
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 2 cut(s) 303, 348
BmrI ACTGGG 1 cut(s) 385
BmsI GCATC 2 cut(s) 441, 534
BmtI GCTAGC 2 cut(s) 210, 270
BmuI ACTGGG 1 cut(s) 385
BpmI CTGGAG 3 cut(s) 67, 159, 171
Bpu1102I GCTNAGC 1 cut(s) 479
BsaWI WCCGGW 2 cut(s) 100, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 3 cut(s) 84, 176, 380
BseAI TCCGGA 2 cut(s) 100, 228
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 20
BseNI ACTGG 3 cut(s) 84, 176, 380
BseXI GCAGC 4 cut(s) 190, 250, 559, 569
Bsh1236I CGCG 1 cut(s) 552
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 301
BsiEI CGRYCG 1 cut(s) 214
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 2 cut(s) 101, 229
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 527
Bsp13I TCCGGA 2 cut(s) 100, 228
Bsp143I GATC 3 cut(s) 55, 430, 439
Bsp1720I GCTNAGC 1 cut(s) 479
BspACI CCGC 6 cut(s) 26, 210, 261, 287, 327, 471
BspANI GGCC 1 cut(s) 131
BspEI TCCGGA 2 cut(s) 100, 228
BspFNI CGCG 1 cut(s) 552
BspLI GGNNCC 2 cut(s) 303, 348
BspOI GCTAGC 2 cut(s) 210, 270
BspPI GGATC 1 cut(s) 50
BspQI GCTCTTC 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 301
BsrBI CCGCTC 1 cut(s) 26
BsrI ACTGG 3 cut(s) 84, 176, 380
BssMI GATC 3 cut(s) 55, 430, 439
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 229, 375
BstC8I GCNNGC 4 cut(s) 208, 268, 485, 489
BstDEI CTNAG 2 cut(s) 297, 479
BstF5I GGATG 1 cut(s) 251
BstFNI CGCG 1 cut(s) 552
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 3 cut(s) 58, 433, 442
BstMBI GATC 3 cut(s) 55, 430, 439
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 484
BstNSI RCATGY 1 cut(s) 491
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 4 cut(s) 190, 250, 559, 569
BstXI CCANNNNNNTGG 1 cut(s) 91
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 251
BtsIMutI CAGTG 2 cut(s) 91, 183
Cac8I GCNNGC 4 cut(s) 208, 268, 485, 489
CfoI GCGC 1 cut(s) 552
Cfr13I GGNCC 1 cut(s) 435
CpoI CGGWCCG 1 cut(s) 435
CspI CGGWCCG 1 cut(s) 435
CviAII CATG 2 cut(s) 443, 488
CviJI RGCY 7 cut(s) 131, 191, 260, 363, 418, 478, 560
CviKI_1 RGCY 7 cut(s) 131, 191, 260, 363, 418, 478, 560
DdeI CTNAG 2 cut(s) 297, 479
DpnI GATC 3 cut(s) 57, 432, 441
DpnII GATC 3 cut(s) 55, 430, 439
DraI TTTAAA 1 cut(s) 564
Eam1104I CTCTTC 2 cut(s) 229, 375
EarI CTCTTC 2 cut(s) 229, 375
EciI GGCGGA 2 cut(s) 276, 460
Eco47I GGWCC 1 cut(s) 435
Eco88I CYCGRG 1 cut(s) 527
FaeI CATG 2 cut(s) 446, 491
FaiI YATR 5 cut(s) 225, 366, 444, 489, 593
FaqI GGGAC 1 cut(s) 121
FatI CATG 2 cut(s) 442, 487
FauI CCCGC 1 cut(s) 334
FblI GTMKAC 1 cut(s) 214
Fnu4HI GCNGC 5 cut(s) 204, 261, 264, 548, 558
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 5 cut(s) 204, 261, 264, 548, 558
FspBI CTAG 2 cut(s) 207, 267
GlaI GCGC 1 cut(s) 551
GluI GCNGC 5 cut(s) 204, 261, 264, 548, 558
GsuI CTGGAG 3 cut(s) 67, 159, 171
HaeIII GGCC 1 cut(s) 131
HapII CCGG 2 cut(s) 101, 229
HhaI GCGC 1 cut(s) 552
Hin1II CATG 2 cut(s) 446, 491
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HincII GTYRAC 3 cut(s) 215, 247, 496
HindII GTYRAC 3 cut(s) 215, 247, 496
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 4 cut(s) 97, 119, 182, 283
HpaII CCGG 2 cut(s) 101, 229
HphI GGTGA 2 cut(s) 60, 315
Hpy166II GTNNAC 4 cut(s) 181, 215, 247, 496
Hpy188I TCNGA 7 cut(s) 23, 55, 124, 282, 430, 435, 450
Hpy188III TCNNGA 3 cut(s) 101, 229, 527
Hpy8I GTNNAC 4 cut(s) 181, 215, 247, 496
HpyAV CCTTC 3 cut(s) 327, 401, 570
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 1 cut(s) 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 484
HpyF3I CTNAG 2 cut(s) 297, 479
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 2 cut(s) 446, 491
HspAI GCGC 1 cut(s) 550
Kpn2I TCCGGA 2 cut(s) 100, 228
Kzo9I GATC 3 cut(s) 55, 430, 439
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 1 cut(s) 23
Lsp1109I GCAGC 4 cut(s) 190, 250, 559, 569
LweI GCATC 2 cut(s) 441, 534
MaeI CTAG 2 cut(s) 207, 267
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 2 cut(s) 386, 459
MalI GATC 3 cut(s) 57, 432, 441
MbiI CCGCTC 1 cut(s) 26
MboI GATC 3 cut(s) 55, 430, 439
MboII GAAGA 3 cut(s) 246, 389, 392
MfeI CAATTG 1 cut(s) 156
MluCI AATT 1 cut(s) 156
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 7 cut(s) 97, 183, 235, 300, 478, 501, 523
MroI TCCGGA 2 cut(s) 100, 228
MseI TTAA 3 cut(s) 411, 420, 563
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 2 cut(s) 101, 229
MunI CAATTG 1 cut(s) 156
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 1 cut(s) 484
NdeII GATC 3 cut(s) 55, 430, 439
NheI GCTAGC 2 cut(s) 206, 266
NlaIII CATG 2 cut(s) 446, 491
NlaIV GGNNCC 2 cut(s) 303, 348
NmeAIII GCCGAG 1 cut(s) 499
NmuCI GTSAC 1 cut(s) 459
NspI RCATGY 1 cut(s) 491
PaeI GCATGC 1 cut(s) 491
PaeR7I CTCGAG 1 cut(s) 527
PciSI GCTCTTC 1 cut(s) 375
PfeI GAWTC 3 cut(s) 97, 119, 283
PkrI GCNGC 5 cut(s) 205, 262, 265, 549, 559
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PspN4I GGNNCC 2 cut(s) 303, 348
PspPI GGNCC 1 cut(s) 435
Rsr2I CGGWCCG 1 cut(s) 435
RsrII CGGWCCG 1 cut(s) 435
SalI GTCGAC 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 3 cut(s) 411, 420, 563
SatI GCNGC 5 cut(s) 204, 261, 264, 548, 558
Sau3AI GATC 3 cut(s) 55, 430, 439
Sau96I GGNCC 1 cut(s) 435
SchI GAGTC 1 cut(s) 176
SfaNI GCATC 2 cut(s) 441, 534
Sfr274I CTCGAG 1 cut(s) 527
SinI GGWCC 1 cut(s) 435
SlaI CTCGAG 1 cut(s) 527
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
SphI GCATGC 1 cut(s) 491
Sse9I AATT 1 cut(s) 156
SsiI CCGC 6 cut(s) 26, 210, 261, 287, 327, 471
SspMI CTAG 2 cut(s) 207, 267
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 1 cut(s) 570
TaqI TCGA 3 cut(s) 135, 214, 528
TaqII GACCGA 1 cut(s) 452
TasI AATT 1 cut(s) 156
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 3 cut(s) 97, 119, 283
Tru1I TTAA 3 cut(s) 411, 420, 563
Tru9I TTAA 3 cut(s) 411, 420, 563
TscAI CASTG 2 cut(s) 91, 183
TseFI GTSAC 1 cut(s) 459
TseI GCWGC 4 cut(s) 203, 263, 547, 557
Tsp45I GTSAC 1 cut(s) 459
TspDTI ATGAA 2 cut(s) 309, 383
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 2 cut(s) 91, 183
VpaK11BI GGWCC 1 cut(s) 435
XceI RCATGY 1 cut(s) 491
XhoI CTCGAG 1 cut(s) 527
XmiI GTMKAC 1 cut(s) 214
XspI CTAG 2 cut(s) 207, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.