Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0017519

Physical Location & Seq

Genomic Coordinates Forward (+)

12423783 .. 12424073

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1165100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGGTTGTTTGGTATCATCCCTGCCATCCATGCCAGCGTTGTAAACTGGGGCAATCCAAAGCGCAACCTCACTCTATTGTATGAAGCTGCCATGGCGTTTTTCTATTTGACGGGGACCGGATTTTATGTCACTCGAATTCCGGAGAGATGGAGGCCGGGGTGGTTTGATTTGGCAGGGCACAGCCATCAGATATTTCATGTTTTGGTGGTTTTGGGTGCGTTGGCGCATTATGGTGCAATTCTTGTAATGCTAGACTGGCGAAACAGCTTTGGATGTGACAGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0010033 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0034285 GO:0042221 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:1901419 GO:1901420 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

97

Amino Acids

10.81

Weight (kDa)

8.0

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HlyIII	PF03006	1 - 78	1.2e-23	Haemolysin-III related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40710 AT2G45250 AT2G45250 AT2G45250 AT4G38290 AT4G38330 AT4G38330 AT4G38330 AT4G38330 AT4G38330
malus_domestica	MD15G1165100.v1.1
pyrus_communis	pycom02g01940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	138
AluBI	AGCT	2 cut(s)	89, 270
AluI	AGCT	2 cut(s)	89, 270
Aor13HI	TCCGGA	1 cut(s)	142
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	138
AspLEI	GCGC	2 cut(s)	66, 229
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	117
BaeGI	GKGCMC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	3 cut(s)	35, 144, 195
BcnI	CCSGG	1 cut(s)	159
BfaI	CTAG	1 cut(s)	254
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	93, 158
BsaWI	WCCGGW	2 cut(s)	119, 142
Bse1I	ACTGG	2 cut(s)	53, 263
BseAI	TCCGGA	1 cut(s)	142
BseDI	CCNNGG	2 cut(s)	93, 158
BseGI	GGATG	3 cut(s)	18, 27, 281
BseNI	ACTGG	2 cut(s)	53, 263
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	157
BsiSI	CCGG	3 cut(s)	120, 143, 158
BslFI	GGGAC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp13I	TCCGGA	1 cut(s)	142
Bsp19I	CCATGG	1 cut(s)	93
BspANI	GGCC	1 cut(s)	157
BspEI	TCCGGA	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	118
BsrI	ACTGG	2 cut(s)	53, 263
BssECI	CCNNGG	2 cut(s)	93, 158
BssT1I	CCWWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	37
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	3 cut(s)	18, 27, 281
BstHHI	GCGC	2 cut(s)	66, 229
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 95, 259
BstSCI	CCNGG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	157
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	3 cut(s)	18, 27, 281
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	2 cut(s)	66, 229
Cfr13I	GGNCC	1 cut(s)	117
CviAII	CATG	3 cut(s)	32, 94, 200
CviJI	RGCY	4 cut(s)	89, 157, 186, 270
CviKI_1	RGCY	4 cut(s)	89, 157, 186, 270
Eco130I	CCWWGG	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	3 cut(s)	35, 97, 203
FaiI	YATR	6 cut(s)	33, 84, 95, 129, 201, 234
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	3 cut(s)	31, 93, 199
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	2 cut(s)	5, 14
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	2 cut(s)	65, 228
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	3 cut(s)	120, 143, 158
HhaI	GCGC	2 cut(s)	66, 229
Hin1II	CATG	3 cut(s)	35, 97, 203
Hin6I	GCGC	2 cut(s)	64, 227
HinP1I	GCGC	2 cut(s)	64, 227
HpaII	CCGG	3 cut(s)	120, 143, 158
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 95, 259
Hsp92II	CATG	3 cut(s)	35, 97, 203
HspAI	GCGC	2 cut(s)	64, 227
Kpn2I	TCCGGA	1 cut(s)	142
LpnPI	CCDG	8 cut(s)	34, 36, 49, 133, 156, 162, 171, 244
Lsp1109I	GCAGC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	254
MaeIII	GTNAC	2 cut(s)	130, 278
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	3 cut(s)	138, 240, 286
MnlI	CCTC	2 cut(s)	80, 147
MroI	TCCGGA	1 cut(s)	142
MseI	TTAA	1 cut(s)	289
MslI	CAYNNNNRTG	1 cut(s)	234
MspI	CCGG	3 cut(s)	120, 143, 158
MspR9I	CCNGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	32, 95, 259
NciI	CCSGG	1 cut(s)	159
NcoI	CCATGG	1 cut(s)	93
NlaIII	CATG	3 cut(s)	35, 97, 203
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	2 cut(s)	130, 278
PkrI	GCNGC	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	289
SatI	GCNGC	1 cut(s)	90
Sau96I	GGNCC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	3 cut(s)	72, 91, 272
SinI	GGWCC	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	234
Sse9I	AATT	3 cut(s)	138, 240, 286
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	136
TasI	AATT	3 cut(s)	138, 240, 286
Tru1I	TTAA	1 cut(s)	289
Tru9I	TTAA	1 cut(s)	289
TseFI	GTSAC	2 cut(s)	130, 278
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	2 cut(s)	130, 278
TspDTI	ATGAA	2 cut(s)	99, 188
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	138
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.