AT4G38330

heptahelical

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
17951324 .. 17952973
1650 bp
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UTR
Exon/CDS
Intron
AT4G38330.3

Sequence Viewer

Length: 144 bp
ATGGGCAGCAACACATGTGGTGAATGCGGAGAAAGGGCAGTCAGTAATGAGGCAGAAAGGAGCATTATCCAAGATATTGTTACAGCAGTGATTGTGAGTCGAAGAGAAGATATATATTTGACAGGTATCCATATTTTGTTCTAG
Functional Annotation

Protein Analysis

47

Amino Acids

5.17

Weight (kDa)

4.75

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017519)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 27
AflIII ACRYGT 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 32
BbvI GCAGC 1 cut(s) 18
BciVI GTATCC 1 cut(s) 137
BfaI CTAG 1 cut(s) 142
BfuI GTATCC 1 cut(s) 137
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 29
BspACI CCGC 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 18
BsuI GTATCC 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
CspCI CAANNNNNGTGG 1 cut(s) 33
CviAII CATG 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
FaeI CATG 1 cut(s) 18
FaiI YATR 4 cut(s) 16, 113, 115, 132
FatI CATG 1 cut(s) 14
Fnu4HI GCNGC 1 cut(s) 7
Fsp4HI GCNGC 1 cut(s) 7
FspBI CTAG 1 cut(s) 142
FspEI CC 8 cut(s) 3, 12, 19, 20, 35, 43, 83, 108
GluI GCNGC 1 cut(s) 7
Hin1II CATG 1 cut(s) 18
HinfI GANTC 1 cut(s) 97
HphI GGTGA 1 cut(s) 32
Hsp92II CATG 1 cut(s) 18
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 1 cut(s) 108
Lsp1109I GCAGC 1 cut(s) 18
MaeI CTAG 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 79
MboII GAAGA 2 cut(s) 114, 119
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 1 cut(s) 43
Mva1269I GAATGC 1 cut(s) 29
NlaIII CATG 1 cut(s) 18
NspI RCATGY 1 cut(s) 18
PciI ACATGT 1 cut(s) 14
PctI GAATGC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 8
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PscI ACATGT 1 cut(s) 14
SatI GCNGC 1 cut(s) 7
SchI GAGTC 1 cut(s) 106
SetI ASST 1 cut(s) 127
SgeI CNNG 3 cut(s) 27, 83, 135
SsiI CCGC 1 cut(s) 27
SspMI CTAG 1 cut(s) 142
TaqI TCGA 1 cut(s) 100
TscAI CASTG 1 cut(s) 93
TseI GCWGC 1 cut(s) 6
TspRI CASTG 1 cut(s) 93
XceI RCATGY 1 cut(s) 18
XspI CTAG 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.